Wall clock time and date at job start Tue Mar 31 2020 11:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46057 * 2 1 4 4 C 1.34780 * 119.99629 * 60.02453 * 3 2 1 5 5 O 1.21276 * 120.00209 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99493 * 180.02562 * 4 3 2 7 7 H 1.08993 * 113.12610 * 47.63025 * 6 4 3 8 8 C 1.52884 * 113.98827 * 180.02562 * 6 4 3 9 9 C 1.50759 * 89.76857 * 114.09669 * 8 6 4 10 10 C 1.38229 * 149.34508 * 179.97438 * 9 8 6 11 11 C 1.38179 * 120.12935 * 180.02562 * 10 9 8 12 12 C 1.38241 * 119.74190 * 0.02562 * 11 10 9 13 13 C 1.37976 * 120.17808 * 359.97438 * 12 11 10 14 14 C 1.38363 * 90.24257 * 0.02562 * 9 8 6 15 15 C 1.53042 * 109.44921 * 119.96682 * 2 1 3 16 16 C 1.53195 * 109.31330 * 181.37990 * 15 2 1 17 17 N 1.46925 * 108.77612 * 305.36654 * 16 15 2 18 18 C 1.36938 * 120.62835 * 233.58950 * 17 16 15 19 19 H 1.08002 * 119.99971 * 27.69258 * 18 17 16 20 20 C 1.38811 * 119.99550 * 207.69769 * 18 17 16 21 21 N 1.31611 * 120.00379 * 17.34640 * 20 18 17 22 22 Si 1.86806 * 119.99657 * 197.35320 * 20 18 17 23 23 H 1.48505 * 109.46911 * 60.00028 * 22 20 18 24 24 H 1.48503 * 109.46977 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47063 * 300.00072 * 22 20 18 26 26 C 1.46917 * 118.73911 * 53.60388 * 17 16 15 27 27 C 1.53033 * 109.46143 * 240.02848 * 2 1 3 28 28 H 1.08995 * 109.47219 * 60.00266 * 1 2 3 29 29 H 1.09003 * 109.47007 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47102 * 299.99629 * 1 2 3 31 31 H 0.96994 * 119.99907 * 240.02939 * 3 2 1 32 32 H 1.09006 * 113.16236 * 358.87340 * 8 6 4 33 33 H 1.09004 * 113.16842 * 229.32389 * 8 6 4 34 34 H 1.08006 * 119.93713 * 0.03756 * 10 9 8 35 35 H 1.07995 * 120.12653 * 180.02562 * 11 10 9 36 36 H 1.08002 * 119.90497 * 179.72475 * 12 11 10 37 37 H 1.08008 * 119.83533 * 179.97438 * 13 12 11 38 38 H 1.09007 * 109.49679 * 301.33155 * 15 2 1 39 39 H 1.08995 * 109.49992 * 61.42350 * 15 2 1 40 40 H 1.08999 * 109.58633 * 185.57216 * 16 15 2 41 41 H 1.09003 * 109.58790 * 65.15059 * 16 15 2 42 42 H 0.97003 * 119.99922 * 179.97438 * 21 20 18 43 43 H 1.09005 * 109.59011 * 186.60580 * 26 17 16 44 44 H 1.09004 * 109.58789 * 66.18473 * 26 17 16 45 45 H 1.09010 * 109.49920 * 298.57659 * 27 2 1 46 46 H 1.09003 * 109.50140 * 58.64212 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6927 2.2110 1.0111 5 8 0.9963 1.8139 1.9212 6 6 2.1943 3.6321 1.0108 7 1 2.0498 4.1368 0.0557 8 6 1.7439 4.4504 2.2211 9 6 3.1753 4.5390 2.6861 10 6 4.0994 4.9866 3.6115 11 6 5.4405 4.6965 3.4486 12 6 5.8545 3.9573 2.3563 13 6 4.9330 3.5101 1.4319 14 6 3.5832 3.7989 1.5905 15 6 2.0396 -0.7208 1.2502 16 6 3.5711 -0.6889 1.2645 17 7 4.0677 -1.2492 0.0004 18 6 4.9760 -2.2740 0.0005 19 1 5.0089 -2.9663 0.8288 20 6 5.8545 -2.4228 -1.0639 21 7 6.0604 -1.4211 -1.8923 22 14 6.7444 -4.0451 -1.3205 23 1 5.7495 -5.1289 -1.5223 24 1 7.6179 -3.9465 -2.5175 25 1 7.5728 -4.3496 -0.1263 26 6 3.5714 -0.6890 -1.2639 27 6 2.0398 -0.7208 -1.2499 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.5753 1.6988 -0.7277 32 1 1.1051 3.8901 2.9039 33 1 1.3201 5.4177 1.9511 34 1 3.7725 5.5641 4.4637 35 1 6.1624 5.0458 4.1719 36 1 6.9026 3.7328 2.2240 37 1 5.2626 2.9333 0.5802 38 1 1.6569 -0.2207 2.1399 39 1 1.6973 -1.7556 1.2385 40 1 3.9412 -1.2848 2.0988 41 1 3.9142 0.3406 1.3676 42 1 6.6746 -1.5250 -2.6358 43 1 3.9417 -1.2850 -2.0981 44 1 3.9145 0.3405 -1.3671 45 1 1.6976 -1.7558 -1.2382 46 1 1.6569 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045542205.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:37 Heat of formation + Delta-G solvation = 33.239474 kcal Electronic energy + Delta-G solvation = -27285.883091 eV Core-core repulsion = 23755.434883 eV Total energy + Delta-G solvation = -3530.448208 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.12261 -40.76904 -38.78852 -36.37152 -35.90152 -33.70182 -32.47840 -31.65265 -31.58978 -29.08979 -28.55972 -26.31622 -25.86229 -23.97561 -23.39083 -22.59373 -22.00669 -20.70952 -20.16480 -18.79721 -18.39403 -17.64827 -16.86238 -16.51557 -16.25668 -15.91583 -15.76790 -15.41405 -15.36556 -15.17478 -14.80197 -14.60361 -14.16841 -13.92767 -13.88569 -13.57008 -13.36028 -13.12677 -13.09563 -12.88543 -12.82856 -12.80055 -12.62124 -12.51657 -12.22305 -12.00329 -11.92428 -11.76783 -11.46067 -11.32248 -11.29218 -10.62756 -10.52748 -9.93649 -9.76316 -9.50572 -8.66475 -7.88177 -5.31816 0.31130 0.44230 1.46229 1.47872 1.54703 1.62589 2.24590 2.50709 2.81813 3.19580 3.26455 3.46018 3.50945 3.67175 3.75854 3.97567 4.07695 4.13977 4.18697 4.19915 4.30004 4.46630 4.62484 4.65456 4.71051 4.74100 4.78278 4.82470 4.89161 4.90905 4.96055 4.97573 5.04060 5.12680 5.16801 5.21082 5.27680 5.37227 5.45260 5.47911 5.57597 5.62739 5.69166 5.74051 5.77190 6.05351 6.38424 6.65690 7.15574 7.30316 7.85437 8.37767 9.17448 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.004756 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.000494 B = 5886.066268 C = 7336.304483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.187 3.813 3 N -0.703 5.703 4 C 0.534 3.466 5 O -0.563 6.563 6 C -0.072 4.072 7 H 0.147 0.853 8 C -0.043 4.043 9 C -0.133 4.133 10 C -0.102 4.102 11 C -0.111 4.111 12 C -0.133 4.133 13 C -0.106 4.106 14 C -0.141 4.141 15 C -0.131 4.131 16 C 0.156 3.844 17 N -0.603 5.603 18 C -0.267 4.267 19 H 0.057 0.943 20 C -0.041 4.041 21 N -0.928 5.928 22 Si 0.962 3.038 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.180 3.820 27 C -0.132 4.132 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.404 0.596 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.145 0.855 35 H 0.155 0.845 36 H 0.134 0.866 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.035 0.965 41 H 0.004 0.996 42 H 0.251 0.749 43 H 0.057 0.943 44 H 0.006 0.994 45 H 0.067 0.933 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.486 13.845 4.723 16.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.101 3.899 3 N -0.354 5.354 4 C 0.321 3.679 5 O -0.442 6.442 6 C -0.092 4.092 7 H 0.165 0.835 8 C -0.080 4.080 9 C -0.134 4.134 10 C -0.119 4.119 11 C -0.129 4.129 12 C -0.151 4.151 13 C -0.125 4.125 14 C -0.142 4.142 15 C -0.171 4.171 16 C 0.031 3.969 17 N -0.326 5.326 18 C -0.397 4.397 19 H 0.075 0.925 20 C -0.237 4.237 21 N -0.574 5.574 22 Si 0.790 3.210 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.054 3.946 27 C -0.171 4.171 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.240 0.760 32 H 0.112 0.888 33 H 0.141 0.859 34 H 0.163 0.837 35 H 0.173 0.827 36 H 0.152 0.848 37 H 0.121 0.879 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.022 0.978 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.024 0.976 45 H 0.086 0.914 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.853 13.536 5.226 16.997 hybrid contribution 1.453 -1.026 -0.696 1.910 sum -7.400 12.510 4.530 15.224 Atomic orbital electron populations 1.22105 0.93231 1.02655 1.02746 1.20187 0.94051 0.80470 0.95187 1.46100 1.52555 1.11613 1.25103 1.20218 0.79272 0.87216 0.81217 1.90587 1.39781 1.77374 1.36495 1.21476 0.91408 0.93356 1.02999 0.83512 1.21430 0.91795 1.00868 0.93862 1.22056 0.97969 0.98066 0.95264 1.20516 0.91809 1.00674 0.98943 1.21396 0.95947 0.97809 0.97750 1.21214 0.99888 0.98944 0.95018 1.20746 0.92369 0.99501 0.99857 1.21976 0.92961 1.00550 0.98674 1.22237 0.96431 0.99875 0.98554 1.20781 0.92891 0.94836 0.88429 1.44215 1.48190 1.39490 1.00747 1.19403 1.10461 1.03675 1.06157 0.92512 1.25652 0.98082 1.00182 0.99824 1.70139 1.38432 1.30508 1.18314 0.85429 0.78134 0.80413 0.76977 1.20493 1.21690 1.20632 1.20585 0.89712 0.95496 0.88775 1.22336 0.97829 1.00486 0.96462 0.91414 0.91390 0.91872 0.76021 0.88808 0.85926 0.83724 0.82701 0.84782 0.87921 0.91323 0.92065 0.94672 0.97815 0.94010 0.92482 0.97583 0.91404 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.17 8.40 71.98 0.60 -3.56 16 2 C 0.19 6.10 0.66 3.63 0.00 6.11 16 3 N -0.70 -21.44 4.10 -422.80 -1.73 -23.17 16 4 C 0.53 16.15 6.82 87.66 0.60 16.74 16 5 O -0.56 -19.84 11.94 -3.02 -0.04 -19.87 16 6 C -0.07 -1.73 4.46 -12.09 -0.05 -1.79 16 7 H 0.15 2.64 8.14 -2.39 -0.02 2.62 16 8 C -0.04 -0.91 7.54 27.47 0.21 -0.71 16 9 C -0.13 -3.34 7.60 -19.82 -0.15 -3.49 16 10 C -0.10 -2.25 10.04 22.25 0.22 -2.03 16 11 C -0.11 -2.46 10.06 22.26 0.22 -2.23 16 12 C -0.13 -3.52 10.03 22.21 0.22 -3.30 16 13 C -0.11 -3.26 10.05 22.38 0.22 -3.03 16 14 C -0.14 -3.98 6.84 -21.80 -0.15 -4.13 16 15 C -0.13 -5.00 4.67 30.67 0.14 -4.86 16 16 C 0.16 7.06 6.26 86.36 0.54 7.60 16 17 N -0.60 -30.27 2.99 -699.09 -2.09 -32.36 16 18 C -0.27 -14.84 9.59 84.03 0.81 -14.04 16 19 H 0.06 3.16 7.89 -2.91 -0.02 3.14 16 20 C -0.04 -2.29 4.91 84.86 0.42 -1.87 16 21 N -0.93 -53.37 11.19 21.65 0.24 -53.13 16 22 Si 0.96 44.72 29.59 68.60 2.03 46.75 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 26 C 0.18 8.17 5.04 86.37 0.43 8.61 16 27 C -0.13 -4.60 4.96 30.67 0.15 -4.45 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 1.93 6.17 -2.39 -0.01 1.91 16 31 H 0.40 11.76 7.27 -92.71 -0.67 11.09 16 32 H 0.09 2.28 7.04 -2.38 -0.02 2.26 16 33 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.13 3.17 8.06 -2.91 -0.02 3.14 16 37 H 0.10 3.44 8.06 -2.91 -0.02 3.41 16 38 H 0.07 2.69 6.20 -2.38 -0.01 2.67 16 39 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.03 1.63 7.93 -2.39 -0.02 1.61 16 41 H 0.00 0.19 7.74 -2.39 -0.02 0.17 16 42 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 43 H 0.06 2.97 6.04 -2.38 -0.01 2.95 16 44 H 0.01 0.29 6.94 -2.38 -0.02 0.27 16 45 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 46 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -66.64 359.75 3.16 -63.47 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.31 Total: 28.74 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 4.45 Total: -10.43 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -3.58 Total: -108.66 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.04 Total: -19.87 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -66.64 3.16 -63.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045542205.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.712 kcal (2) G-P(sol) polarization free energy of solvation -66.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds