Wall clock time and date at job start Tue Mar 31 2020 11:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.45832 * 2 1 4 4 C 1.34784 * 120.00202 * 59.99961 * 3 2 1 5 5 O 1.21269 * 119.99940 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99800 * 179.97438 * 4 3 2 7 7 H 1.08995 * 112.83563 * 309.66823 * 6 4 3 8 8 C 1.53520 * 113.58545 * 178.55309 * 6 4 3 9 9 C 1.51612 * 87.24698 * 245.33425 * 8 6 4 10 10 C 1.38372 * 147.52662 * 179.97438 * 9 8 6 11 11 C 1.38093 * 120.32594 * 180.02562 * 10 9 8 12 12 C 1.38238 * 119.95737 * 0.02562 * 11 10 9 13 13 C 1.38095 * 119.95434 * 0.02562 * 12 11 10 14 14 C 1.38248 * 120.40606 * 0.02562 * 13 12 11 15 15 C 1.53038 * 109.45863 * 119.96920 * 2 1 3 16 16 C 1.53163 * 109.33041 * 181.38625 * 15 2 1 17 17 N 1.46934 * 108.76446 * 305.35786 * 16 15 2 18 18 C 1.36935 * 120.62867 * 233.62783 * 17 16 15 19 19 H 1.07996 * 119.99825 * 151.80797 * 18 17 16 20 20 C 1.38817 * 120.00003 * 331.80636 * 18 17 16 21 21 N 1.31619 * 119.99751 * 343.09323 * 20 18 17 22 22 Si 1.86796 * 119.99722 * 163.08831 * 20 18 17 23 23 H 1.48499 * 109.47067 * 60.00546 * 22 20 18 24 24 H 1.48500 * 109.47146 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47411 * 300.00350 * 22 20 18 26 26 C 1.46927 * 118.73932 * 53.60964 * 17 16 15 27 27 C 1.53039 * 109.46027 * 240.02767 * 2 1 3 28 28 H 1.09005 * 109.47115 * 59.99716 * 1 2 3 29 29 H 1.09001 * 109.47234 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47397 * 300.00633 * 1 2 3 31 31 H 0.97001 * 120.00362 * 239.99543 * 3 2 1 32 32 H 1.09001 * 113.58602 * 359.92069 * 8 6 4 33 33 H 1.09002 * 113.58856 * 130.74008 * 8 6 4 34 34 H 1.07999 * 119.83805 * 0.03555 * 10 9 8 35 35 H 1.08010 * 120.02085 * 180.02562 * 11 10 9 36 36 H 1.08004 * 120.02444 * 180.02562 * 12 11 10 37 37 H 1.07998 * 119.83635 * 180.02562 * 13 12 11 38 38 H 1.09005 * 109.50140 * 301.33004 * 15 2 1 39 39 H 1.09001 * 109.49691 * 61.42177 * 15 2 1 40 40 H 1.08996 * 109.58906 * 185.57417 * 16 15 2 41 41 H 1.09004 * 109.70461 * 65.21089 * 16 15 2 42 42 H 0.97004 * 119.99117 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.58601 * 186.60269 * 26 17 16 44 44 H 1.09005 * 109.58831 * 66.17526 * 26 17 16 45 45 H 1.09006 * 109.49178 * 298.57941 * 27 2 1 46 46 H 1.08996 * 109.49888 * 58.64568 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6922 2.2112 1.0109 5 8 0.9947 1.8146 1.9201 6 6 2.1948 3.6319 1.0111 7 1 3.2694 3.7005 0.8426 8 6 1.7073 4.4557 2.2113 9 6 0.9413 5.3102 1.2205 10 6 0.0970 6.3873 1.0158 11 6 -0.3077 6.7231 -0.2611 12 6 0.1309 5.9811 -1.3418 13 6 0.9727 4.9046 -1.1431 14 6 1.3811 4.5619 0.1325 15 6 2.0398 -0.7208 1.2500 16 6 3.5710 -0.6889 1.2647 17 7 4.0676 -1.2494 0.0004 18 6 4.9752 -2.2747 0.0006 19 1 5.0025 -2.9718 -0.8237 20 6 5.8603 -2.4179 1.0604 21 7 6.0654 -1.4142 1.8868 22 14 6.7600 -4.0352 1.3137 23 1 7.5836 -4.3364 0.1153 24 1 7.6394 -3.9311 2.5058 25 1 5.7719 -5.1241 1.5217 26 6 3.5714 -0.6890 -1.2639 27 6 2.0399 -0.7209 -1.2500 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.5757 1.6987 -0.7274 32 1 1.0657 3.8966 2.8923 33 1 2.5050 4.9924 2.7249 34 1 -0.2470 6.9682 1.8587 35 1 -0.9665 7.5651 -0.4152 36 1 -0.1847 6.2431 -2.3410 37 1 1.3145 4.3265 -1.9888 38 1 1.6573 -0.2208 2.1399 39 1 1.6976 -1.7556 1.2383 40 1 3.9410 -1.2849 2.0989 41 1 3.9162 0.3398 1.3689 42 1 6.6836 -1.5145 2.6276 43 1 3.9417 -1.2851 -2.0980 44 1 3.9145 0.3404 -1.3671 45 1 1.6975 -1.7557 -1.2381 46 1 1.6570 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045542206.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:43 Heat of formation + Delta-G solvation = 47.642728 kcal Electronic energy + Delta-G solvation = -26902.358091 eV Core-core repulsion = 23372.534456 eV Total energy + Delta-G solvation = -3529.823636 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.98636 -39.50609 -37.34477 -35.20258 -34.34264 -31.99156 -31.03368 -30.66954 -29.88142 -27.66022 -27.40202 -25.30573 -24.04445 -22.40427 -22.23659 -21.30295 -20.71014 -19.64205 -18.63188 -17.38214 -16.80081 -16.71095 -15.51761 -15.00471 -14.82904 -14.73728 -14.38263 -14.23222 -13.85187 -13.41154 -13.26732 -13.19746 -13.11411 -12.91194 -12.64393 -12.37132 -12.05755 -11.90506 -11.79820 -11.58334 -11.37407 -11.16615 -10.98010 -10.91552 -10.70732 -10.58794 -10.38873 -10.23372 -9.96801 -9.76776 -9.55253 -9.24138 -8.92720 -8.59208 -8.54207 -8.44247 -6.65011 -5.77409 -3.20432 1.15760 1.27228 2.87239 3.38653 3.44814 3.45146 3.46080 3.68716 4.11021 4.27898 4.44071 4.50327 4.88694 4.96055 4.97885 5.24426 5.34597 5.36409 5.43862 5.47941 5.49264 5.55149 5.60218 5.62511 5.79112 5.92241 5.97125 6.03484 6.05933 6.14342 6.21833 6.24770 6.34942 6.39217 6.48002 6.53987 6.61761 6.67427 6.75511 6.83224 6.85163 6.93886 7.11823 7.42926 7.71580 7.80593 7.92697 8.46509 8.58406 9.22724 9.86080 10.42877 11.30510 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022716 B = 0.003432 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.304334 B = 8156.075835 C = 8496.732230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.184 3.816 3 N -0.705 5.705 4 C 0.536 3.464 5 O -0.535 6.535 6 C -0.070 4.070 7 H 0.121 0.879 8 C -0.056 4.056 9 C -0.118 4.118 10 C -0.099 4.099 11 C -0.116 4.116 12 C -0.123 4.123 13 C -0.087 4.087 14 C -0.119 4.119 15 C -0.151 4.151 16 C 0.178 3.822 17 N -0.591 5.591 18 C -0.255 4.255 19 H 0.064 0.936 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.146 3.854 27 C -0.137 4.137 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.397 0.603 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.016 0.984 42 H 0.254 0.746 43 H 0.055 0.945 44 H 0.013 0.987 45 H 0.074 0.926 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.421 14.224 -5.089 18.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.099 3.901 3 N -0.355 5.355 4 C 0.321 3.679 5 O -0.412 6.412 6 C -0.091 4.091 7 H 0.139 0.861 8 C -0.093 4.093 9 C -0.118 4.118 10 C -0.117 4.117 11 C -0.134 4.134 12 C -0.140 4.140 13 C -0.106 4.106 14 C -0.120 4.120 15 C -0.191 4.191 16 C 0.053 3.947 17 N -0.314 5.314 18 C -0.385 4.385 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.019 3.981 27 C -0.177 4.177 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.232 0.768 32 H 0.128 0.872 33 H 0.114 0.886 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.034 0.966 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.031 0.969 45 H 0.093 0.907 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.792 13.916 -4.309 18.743 hybrid contribution 0.834 -0.609 -0.370 1.097 sum -10.958 13.307 -4.680 17.862 Atomic orbital electron populations 1.22219 0.95511 1.01769 1.02272 1.20273 0.92509 0.80126 0.97186 1.46042 1.52787 1.12022 1.24644 1.19765 0.80097 0.85988 0.82035 1.90607 1.38086 1.76628 1.35883 1.21603 1.00960 0.91691 0.94872 0.86109 1.21813 0.98373 0.93675 0.95434 1.22362 0.96649 0.95203 0.97557 1.20290 0.97759 0.96585 0.97101 1.20991 1.00212 0.99915 0.92284 1.20954 0.98359 0.95725 0.99009 1.20300 0.97631 0.97136 0.95486 1.21832 0.99072 0.97284 0.93779 1.22576 1.00799 0.99083 0.96628 1.20675 0.87217 0.96913 0.89923 1.44057 1.48327 1.39567 0.99407 1.19126 1.09742 1.02895 1.06709 0.91841 1.25039 0.97197 0.97356 0.99923 1.70029 1.37380 1.29000 1.18072 0.86386 0.79281 0.83868 0.77302 1.20939 1.21656 1.21051 1.20858 0.90430 0.96168 0.90614 1.22335 0.99676 1.00503 0.95170 0.93601 0.92307 0.90847 0.76840 0.87159 0.88561 0.86404 0.85763 0.85684 0.86329 0.91034 0.92264 0.89845 0.96576 0.93628 0.92666 0.96879 0.90739 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 8.40 37.16 0.31 -2.17 16 2 C 0.18 3.13 0.66 -131.78 -0.09 3.04 16 3 N -0.70 -11.07 4.10 -47.57 -0.20 -11.27 16 4 C 0.54 8.67 6.78 -10.98 -0.07 8.59 16 5 O -0.53 -10.10 11.92 5.57 0.07 -10.04 16 6 C -0.07 -0.93 4.33 -92.22 -0.40 -1.33 16 7 H 0.12 1.46 8.14 -51.93 -0.42 1.03 16 8 C -0.06 -0.68 7.77 -27.18 -0.21 -0.89 16 9 C -0.12 -1.45 7.49 -103.79 -0.78 -2.22 16 10 C -0.10 -1.06 10.03 -39.59 -0.40 -1.46 16 11 C -0.12 -1.11 10.04 -39.63 -0.40 -1.51 16 12 C -0.12 -1.20 10.04 -39.63 -0.40 -1.60 16 13 C -0.09 -0.98 10.02 -39.63 -0.40 -1.38 16 14 C -0.12 -1.50 6.99 -103.83 -0.73 -2.22 16 15 C -0.15 -3.08 4.66 -26.63 -0.12 -3.20 16 16 C 0.18 4.30 5.04 -3.72 -0.02 4.28 16 17 N -0.59 -14.46 2.99 -172.33 -0.52 -14.98 16 18 C -0.26 -6.93 9.58 -15.06 -0.14 -7.07 16 19 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 20 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 21 N -0.90 -26.12 11.20 55.49 0.62 -25.50 16 22 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.15 2.88 6.24 -3.71 -0.02 2.86 16 27 C -0.14 -2.26 4.96 -26.61 -0.13 -2.39 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.27 6.17 -51.93 -0.32 0.95 16 31 H 0.40 5.63 7.27 -40.82 -0.30 5.33 16 32 H 0.11 1.48 7.04 -51.93 -0.37 1.12 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.07 1.51 6.21 -51.93 -0.32 1.19 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.08 2.30 6.06 -51.93 -0.31 1.99 16 41 H 0.02 0.41 7.74 -51.93 -0.40 0.01 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.05 1.08 7.93 -51.93 -0.41 0.66 16 44 H 0.01 0.26 6.94 -51.93 -0.36 -0.10 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 359.85 15.07 5.42 5.42 Total: -1.00 -31.28 359.85 -10.70 -41.98 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.99 Total: 6.36 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -4.08 Total: -8.66 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.09 Total: -51.75 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.07 Total: -10.04 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.28 -10.70 -41.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045542206.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.623 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds