Wall clock time and date at job start Tue Mar 31 2020 11:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.45832 * 2 1 4 4 C 1.34784 * 120.00202 * 59.99961 * 3 2 1 5 5 O 1.21269 * 119.99940 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99800 * 179.97438 * 4 3 2 7 7 H 1.08995 * 112.83563 * 309.66823 * 6 4 3 8 8 C 1.53520 * 113.58545 * 178.55309 * 6 4 3 9 9 C 1.51612 * 87.24698 * 245.33425 * 8 6 4 10 10 C 1.38372 * 147.52662 * 179.97438 * 9 8 6 11 11 C 1.38093 * 120.32594 * 180.02562 * 10 9 8 12 12 C 1.38238 * 119.95737 * 0.02562 * 11 10 9 13 13 C 1.38095 * 119.95434 * 0.02562 * 12 11 10 14 14 C 1.38248 * 120.40606 * 0.02562 * 13 12 11 15 15 C 1.53038 * 109.45863 * 119.96920 * 2 1 3 16 16 C 1.53163 * 109.33041 * 181.38625 * 15 2 1 17 17 N 1.46934 * 108.76446 * 305.35786 * 16 15 2 18 18 C 1.36935 * 120.62867 * 233.62783 * 17 16 15 19 19 H 1.07996 * 119.99825 * 151.80797 * 18 17 16 20 20 C 1.38817 * 120.00003 * 331.80636 * 18 17 16 21 21 N 1.31619 * 119.99751 * 343.09323 * 20 18 17 22 22 Si 1.86796 * 119.99722 * 163.08831 * 20 18 17 23 23 H 1.48499 * 109.47067 * 60.00546 * 22 20 18 24 24 H 1.48500 * 109.47146 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47411 * 300.00350 * 22 20 18 26 26 C 1.46927 * 118.73932 * 53.60964 * 17 16 15 27 27 C 1.53039 * 109.46027 * 240.02767 * 2 1 3 28 28 H 1.09005 * 109.47115 * 59.99716 * 1 2 3 29 29 H 1.09001 * 109.47234 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47397 * 300.00633 * 1 2 3 31 31 H 0.97001 * 120.00362 * 239.99543 * 3 2 1 32 32 H 1.09001 * 113.58602 * 359.92069 * 8 6 4 33 33 H 1.09002 * 113.58856 * 130.74008 * 8 6 4 34 34 H 1.07999 * 119.83805 * 0.03555 * 10 9 8 35 35 H 1.08010 * 120.02085 * 180.02562 * 11 10 9 36 36 H 1.08004 * 120.02444 * 180.02562 * 12 11 10 37 37 H 1.07998 * 119.83635 * 180.02562 * 13 12 11 38 38 H 1.09005 * 109.50140 * 301.33004 * 15 2 1 39 39 H 1.09001 * 109.49691 * 61.42177 * 15 2 1 40 40 H 1.08996 * 109.58906 * 185.57417 * 16 15 2 41 41 H 1.09004 * 109.70461 * 65.21089 * 16 15 2 42 42 H 0.97004 * 119.99117 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.58601 * 186.60269 * 26 17 16 44 44 H 1.09005 * 109.58831 * 66.17526 * 26 17 16 45 45 H 1.09006 * 109.49178 * 298.57941 * 27 2 1 46 46 H 1.08996 * 109.49888 * 58.64568 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6922 2.2112 1.0109 5 8 0.9947 1.8146 1.9201 6 6 2.1948 3.6319 1.0111 7 1 3.2694 3.7005 0.8426 8 6 1.7073 4.4557 2.2113 9 6 0.9413 5.3102 1.2205 10 6 0.0970 6.3873 1.0158 11 6 -0.3077 6.7231 -0.2611 12 6 0.1309 5.9811 -1.3418 13 6 0.9727 4.9046 -1.1431 14 6 1.3811 4.5619 0.1325 15 6 2.0398 -0.7208 1.2500 16 6 3.5710 -0.6889 1.2647 17 7 4.0676 -1.2494 0.0004 18 6 4.9752 -2.2747 0.0006 19 1 5.0025 -2.9718 -0.8237 20 6 5.8603 -2.4179 1.0604 21 7 6.0654 -1.4142 1.8868 22 14 6.7600 -4.0352 1.3137 23 1 7.5836 -4.3364 0.1153 24 1 7.6394 -3.9311 2.5058 25 1 5.7719 -5.1241 1.5217 26 6 3.5714 -0.6890 -1.2639 27 6 2.0399 -0.7209 -1.2500 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.5757 1.6987 -0.7274 32 1 1.0657 3.8966 2.8923 33 1 2.5050 4.9924 2.7249 34 1 -0.2470 6.9682 1.8587 35 1 -0.9665 7.5651 -0.4152 36 1 -0.1847 6.2431 -2.3410 37 1 1.3145 4.3265 -1.9888 38 1 1.6573 -0.2208 2.1399 39 1 1.6976 -1.7556 1.2383 40 1 3.9410 -1.2849 2.0989 41 1 3.9162 0.3398 1.3689 42 1 6.6836 -1.5145 2.6276 43 1 3.9417 -1.2851 -2.0980 44 1 3.9145 0.3404 -1.3671 45 1 1.6975 -1.7557 -1.2381 46 1 1.6570 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045542206.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:42 Heat of formation + Delta-G solvation = 30.809675 kcal Electronic energy + Delta-G solvation = -26903.088027 eV Core-core repulsion = 23372.534456 eV Total energy + Delta-G solvation = -3530.553572 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.05533 -40.72042 -38.76793 -36.32061 -35.88324 -33.65438 -32.48206 -31.65950 -31.57289 -29.10575 -28.51367 -26.35079 -25.85540 -23.94042 -23.37591 -22.59580 -21.97912 -20.73218 -20.15970 -18.78043 -18.41174 -17.60810 -16.85124 -16.51537 -16.11830 -16.03116 -15.62177 -15.57112 -15.25594 -15.15137 -14.87360 -14.54324 -14.08881 -13.96246 -13.85796 -13.54057 -13.29178 -13.21980 -13.05396 -12.88694 -12.85446 -12.79635 -12.56453 -12.52196 -12.26042 -11.97765 -11.91117 -11.75049 -11.49417 -11.30630 -11.26523 -10.59056 -10.51909 -9.94647 -9.75997 -9.47690 -8.65260 -7.86201 -5.31504 0.33649 0.46851 1.45653 1.48882 1.54853 1.63937 2.26304 2.51503 2.84293 3.17056 3.28721 3.42763 3.45651 3.69023 3.76412 4.00125 4.08589 4.13331 4.21342 4.23413 4.30924 4.49027 4.64829 4.68675 4.70269 4.72819 4.79837 4.83636 4.86111 4.94350 4.95442 5.01386 5.04634 5.13658 5.16557 5.22604 5.33632 5.37074 5.48604 5.50539 5.58346 5.63757 5.69178 5.77613 5.78779 6.07593 6.39523 6.66438 7.15639 7.32700 7.88022 8.39560 9.19340 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022716 B = 0.003432 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.304334 B = 8156.075835 C = 8496.732230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.187 3.813 3 N -0.701 5.701 4 C 0.532 3.468 5 O -0.567 6.567 6 C -0.071 4.071 7 H 0.128 0.872 8 C -0.056 4.056 9 C -0.136 4.136 10 C -0.109 4.109 11 C -0.114 4.114 12 C -0.123 4.123 13 C -0.098 4.098 14 C -0.137 4.137 15 C -0.139 4.139 16 C 0.194 3.806 17 N -0.607 5.607 18 C -0.263 4.263 19 H 0.069 0.931 20 C -0.051 4.051 21 N -0.933 5.933 22 Si 0.964 3.036 23 H -0.273 1.273 24 H -0.297 1.297 25 H -0.281 1.281 26 C 0.141 3.859 27 C -0.123 4.123 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.406 0.594 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.134 0.866 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.132 0.868 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.040 0.960 41 H -0.005 1.005 42 H 0.247 0.753 43 H 0.059 0.941 44 H 0.023 0.977 45 H 0.072 0.928 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.801 15.241 -7.574 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.101 3.899 3 N -0.351 5.351 4 C 0.318 3.682 5 O -0.447 6.447 6 C -0.091 4.091 7 H 0.146 0.854 8 C -0.093 4.093 9 C -0.137 4.137 10 C -0.127 4.127 11 C -0.132 4.132 12 C -0.141 4.141 13 C -0.116 4.116 14 C -0.137 4.137 15 C -0.179 4.179 16 C 0.068 3.932 17 N -0.331 5.331 18 C -0.393 4.393 19 H 0.086 0.914 20 C -0.247 4.247 21 N -0.579 5.579 22 Si 0.792 3.208 23 H -0.198 1.198 24 H -0.223 1.223 25 H -0.207 1.207 26 C 0.016 3.984 27 C -0.163 4.163 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.242 0.758 32 H 0.110 0.890 33 H 0.131 0.869 34 H 0.152 0.848 35 H 0.172 0.828 36 H 0.171 0.829 37 H 0.150 0.850 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.013 0.987 42 H 0.056 0.944 43 H 0.078 0.922 44 H 0.041 0.959 45 H 0.091 0.909 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.182 14.941 -6.844 21.068 hybrid contribution 1.230 -0.864 0.367 1.547 sum -11.953 14.078 -6.478 19.571 Atomic orbital electron populations 1.22095 0.93824 1.02458 1.02341 1.20184 0.93667 0.80491 0.95541 1.45991 1.52771 1.11434 1.24948 1.20291 0.79424 0.87076 0.81387 1.90590 1.39571 1.77495 1.36996 1.21562 1.01403 0.89951 0.96233 0.85438 1.21774 0.98747 0.93710 0.95079 1.22440 0.97736 0.96243 0.97236 1.20617 0.97330 0.96270 0.98502 1.21406 0.99800 1.00377 0.91609 1.21351 0.97350 0.94845 1.00515 1.20593 0.97869 0.97864 0.95245 1.21792 0.99886 0.97359 0.94666 1.22373 0.97875 0.99227 0.98401 1.20316 0.89416 0.94612 0.88873 1.44271 1.48233 1.39607 1.00985 1.19494 1.09518 1.03661 1.06606 0.91355 1.25787 0.98583 1.00211 1.00088 1.70190 1.38348 1.30820 1.18592 0.85391 0.78076 0.80209 0.77074 1.19820 1.22321 1.20700 1.21067 0.92625 0.96327 0.88424 1.22203 0.96853 1.00899 0.96298 0.91425 0.91323 0.92819 0.75802 0.89032 0.86942 0.84783 0.82804 0.82887 0.85027 0.92363 0.92808 0.94120 0.98659 0.94352 0.92232 0.95949 0.90892 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.36 8.40 71.98 0.60 -3.76 16 2 C 0.19 6.12 0.66 3.63 0.00 6.12 16 3 N -0.70 -21.47 4.10 -422.82 -1.73 -23.21 16 4 C 0.53 17.36 6.78 87.66 0.59 17.96 16 5 O -0.57 -22.10 11.92 -2.99 -0.04 -22.14 16 6 C -0.07 -1.88 4.33 -11.83 -0.05 -1.93 16 7 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 8 C -0.06 -1.40 7.77 30.31 0.24 -1.16 16 9 C -0.14 -3.26 7.49 -19.33 -0.14 -3.41 16 10 C -0.11 -2.14 10.03 22.27 0.22 -1.92 16 11 C -0.11 -1.83 10.04 22.24 0.22 -1.61 16 12 C -0.12 -2.01 10.04 22.24 0.22 -1.79 16 13 C -0.10 -1.97 10.02 22.24 0.22 -1.75 16 14 C -0.14 -3.30 6.99 -19.35 -0.14 -3.44 16 15 C -0.14 -5.77 4.66 30.66 0.14 -5.63 16 16 C 0.19 9.67 5.04 86.35 0.44 10.11 16 17 N -0.61 -29.93 2.99 -699.12 -2.09 -32.02 16 18 C -0.26 -14.35 9.58 84.04 0.81 -13.54 16 19 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 20 C -0.05 -2.89 4.92 84.86 0.42 -2.47 16 21 N -0.93 -56.04 11.20 21.65 0.24 -55.80 16 22 Si 0.96 45.30 29.59 68.60 2.03 47.33 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 26 C 0.14 5.34 6.24 86.36 0.54 5.88 16 27 C -0.12 -3.73 4.96 30.67 0.15 -3.58 16 28 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.05 1.81 6.17 -2.39 -0.01 1.80 16 31 H 0.41 10.90 7.27 -92.71 -0.67 10.23 16 32 H 0.09 2.60 7.04 -2.39 -0.02 2.59 16 33 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.13 2.08 8.06 -2.91 -0.02 2.05 16 35 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 36 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 37 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.06 2.57 6.21 -2.38 -0.01 2.55 16 39 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.04 2.36 6.06 -2.39 -0.01 2.35 16 41 H 0.00 -0.25 7.74 -2.38 -0.02 -0.27 16 42 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 43 H 0.06 2.20 7.93 -2.39 -0.02 2.18 16 44 H 0.02 0.82 6.94 -2.38 -0.02 0.81 16 45 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 46 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -69.68 359.85 3.21 -66.47 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.31 Total: 25.26 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 4.49 Total: -5.90 kcal Atomic # 7 Polarization: -107.44 SS G_CDS: -3.58 Total: -111.03 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.04 Total: -22.14 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -69.68 3.21 -66.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045542206.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.281 kcal (2) G-P(sol) polarization free energy of solvation -69.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds