Wall clock time and date at job start Tue Mar 31 2020 11:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 110.88855 * 2 1 4 4 C 1.34778 * 119.99716 * 56.12172 * 3 2 1 5 5 O 1.21284 * 120.00222 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99832 * 179.97438 * 4 3 2 7 7 C 1.54345 * 110.81960 * 292.96791 * 6 4 3 8 8 C 1.51367 * 105.17065 * 215.42447 * 7 6 4 9 9 C 1.38497 * 130.39543 * 197.18980 * 8 7 6 10 10 C 1.38094 * 120.21687 * 180.02562 * 9 8 7 11 11 C 1.38254 * 119.93648 * 0.02562 * 10 9 8 12 12 C 1.38101 * 119.93518 * 359.97438 * 11 10 9 13 13 C 1.38219 * 109.75734 * 17.19104 * 8 7 6 14 14 C 1.51373 * 109.75920 * 0.02562 * 13 8 7 15 15 C 1.55160 * 111.00303 * 236.11845 * 2 1 3 16 16 C 1.54316 * 102.94268 * 206.39072 * 15 2 1 17 17 N 1.47026 * 107.27365 * 22.19228 * 16 15 2 18 18 C 1.36933 * 125.65326 * 180.79632 * 17 16 15 19 19 H 1.08001 * 120.00302 * 180.02562 * 18 17 16 20 20 C 1.38819 * 119.99866 * 0.02562 * 18 17 16 21 21 N 1.31626 * 119.99573 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00125 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47395 * 60.00020 * 22 20 18 24 24 H 1.48503 * 109.47153 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47373 * 299.99913 * 22 20 18 26 26 C 1.47425 * 108.70074 * 1.05989 * 17 16 15 27 27 H 1.08997 * 109.47466 * 183.87982 * 1 2 3 28 28 H 1.08999 * 109.47096 * 303.88650 * 1 2 3 29 29 H 1.09006 * 109.46602 * 63.87954 * 1 2 3 30 30 H 0.96993 * 120.00105 * 236.11525 * 3 2 1 31 31 H 1.09001 * 110.72778 * 56.58751 * 6 4 3 32 32 H 1.08995 * 110.30622 * 334.35248 * 7 6 4 33 33 H 1.09001 * 110.30096 * 96.50466 * 7 6 4 34 34 H 1.07999 * 119.88765 * 0.02562 * 9 8 7 35 35 H 1.07998 * 120.03335 * 180.02562 * 10 9 8 36 36 H 1.08002 * 120.03174 * 179.97438 * 11 10 9 37 37 H 1.07995 * 119.89405 * 180.02562 * 12 11 10 38 38 H 1.09003 * 110.30040 * 223.88926 * 14 13 8 39 39 H 1.08997 * 110.30583 * 101.73238 * 14 13 8 40 40 H 1.08997 * 110.71793 * 88.02402 * 15 2 1 41 41 H 1.09002 * 110.71871 * 324.75748 * 15 2 1 42 42 H 1.09004 * 109.88447 * 262.78098 * 16 15 2 43 43 H 1.09000 * 109.88516 * 141.60887 * 16 15 2 44 44 H 0.97000 * 119.99477 * 180.02562 * 21 20 18 45 45 H 1.09001 * 110.36478 * 94.71036 * 26 17 16 46 46 H 1.08998 * 110.36859 * 217.03414 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0524 1.3687 0.0000 4 6 1.6848 2.2302 0.9691 5 8 0.9211 1.8726 1.8408 6 6 2.2225 3.6381 0.9694 7 6 3.7415 3.6450 1.2429 8 6 3.9904 4.8916 2.0646 9 6 5.1669 5.5736 2.3270 10 6 5.1524 6.7059 3.1174 11 6 3.9601 7.1608 3.6493 12 6 2.7859 6.4821 3.3889 13 6 2.7982 5.3469 2.5956 14 6 1.6668 4.4370 2.1676 15 6 2.0862 -0.8075 -1.2025 16 6 3.4678 -1.2732 -0.6969 17 7 3.4280 -1.2424 0.7725 18 6 4.4638 -1.5698 1.6061 19 1 4.3336 -1.5148 2.6768 20 6 5.6815 -1.9726 1.0748 21 7 5.8404 -2.0391 -0.2301 22 14 7.0944 -2.4200 2.2118 23 1 6.6900 -3.5537 3.0816 24 1 8.2752 -2.8145 1.4024 25 1 7.4411 -1.2481 3.0554 26 6 2.0860 -0.8066 1.2000 27 1 -0.3634 -1.0253 0.0695 28 1 -0.3633 0.5730 0.8531 29 1 -0.3633 0.4525 -0.9228 30 1 2.6628 1.6548 -0.6973 31 1 1.9928 4.1390 0.0290 32 1 4.0285 2.7571 1.8062 33 1 4.2945 3.6938 0.3048 34 1 6.0987 5.2187 1.9122 35 1 6.0715 7.2357 3.3197 36 1 3.9470 8.0460 4.2680 37 1 1.8548 6.8382 3.8044 38 1 0.8029 5.0266 1.8604 39 1 1.3959 3.7625 2.9798 40 1 2.1915 -0.1694 -2.0799 41 1 1.4470 -1.6630 -1.4212 42 1 4.2425 -0.5983 -1.0609 43 1 3.6657 -2.2883 -1.0411 44 1 6.6911 -2.3209 -0.6013 45 1 1.4531 -1.6707 1.4022 46 1 2.1567 -0.1720 2.0834 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046654096.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:54 Heat of formation + Delta-G solvation = 11.244526 kcal Electronic energy + Delta-G solvation = -26668.985158 eV Core-core repulsion = 23137.583177 eV Total energy + Delta-G solvation = -3531.401980 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.58425 -39.39009 -37.39853 -35.32289 -33.91757 -31.94571 -31.40681 -30.19069 -29.04928 -28.58475 -27.25124 -25.66602 -24.07163 -23.32090 -21.54666 -20.95744 -20.36927 -19.79629 -18.97015 -17.29388 -16.72266 -16.21460 -15.78316 -15.53705 -14.99225 -14.61751 -14.50143 -14.24008 -13.74210 -13.51972 -13.28379 -13.12231 -12.90669 -12.77170 -12.69679 -12.28748 -11.93459 -11.88201 -11.81073 -11.66132 -11.25826 -11.17125 -11.13054 -10.89044 -10.85953 -10.80913 -10.36195 -10.33499 -10.10200 -9.98408 -9.65188 -9.19176 -8.83476 -8.65011 -8.51922 -8.49767 -6.79466 -5.70310 -3.02112 1.32265 1.35687 2.94166 3.41233 3.45718 3.46897 3.48389 3.72753 4.31498 4.51251 4.52943 4.90983 4.95522 4.96449 5.02686 5.13395 5.20625 5.33553 5.41908 5.47127 5.50389 5.58461 5.63714 5.73968 5.75402 5.80298 5.82948 6.04396 6.06142 6.13515 6.15278 6.17520 6.22188 6.38369 6.40059 6.41986 6.46005 6.55752 6.63965 6.70447 6.81203 6.96718 7.15208 7.54837 7.57100 7.80414 7.93705 8.26789 8.59878 9.24269 9.84325 10.50525 11.41580 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011400 B = 0.004511 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.646013 B = 6206.194018 C = 8022.419243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.156 3.844 3 N -0.698 5.698 4 C 0.526 3.474 5 O -0.540 6.540 6 C -0.109 4.109 7 C -0.073 4.073 8 C -0.090 4.090 9 C -0.105 4.105 10 C -0.123 4.123 11 C -0.124 4.124 12 C -0.109 4.109 13 C -0.093 4.093 14 C -0.066 4.066 15 C -0.147 4.147 16 C 0.178 3.822 17 N -0.603 5.603 18 C -0.222 4.222 19 H 0.075 0.925 20 C -0.008 4.008 21 N -0.924 5.924 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.134 3.866 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.399 0.601 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.045 0.955 43 H 0.043 0.957 44 H 0.251 0.749 45 H 0.024 0.976 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.898 16.053 -0.350 17.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.070 3.930 3 N -0.348 5.348 4 C 0.312 3.688 5 O -0.417 6.417 6 C -0.131 4.131 7 C -0.110 4.110 8 C -0.090 4.090 9 C -0.123 4.123 10 C -0.141 4.141 11 C -0.142 4.142 12 C -0.127 4.127 13 C -0.093 4.093 14 C -0.103 4.103 15 C -0.186 4.186 16 C 0.053 3.947 17 N -0.329 5.329 18 C -0.351 4.351 19 H 0.093 0.907 20 C -0.204 4.204 21 N -0.572 5.572 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.213 1.213 26 C 0.007 3.993 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.233 0.767 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.042 0.958 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.213 15.686 0.240 17.267 hybrid contribution 1.292 -0.150 0.182 1.314 sum -5.920 15.536 0.423 16.632 Atomic orbital electron populations 1.22038 0.94288 1.02352 1.02444 1.21485 0.92669 0.80886 0.98005 1.45794 1.48382 1.11748 1.28840 1.20119 0.80885 0.86503 0.81312 1.90621 1.36064 1.78365 1.36693 1.21978 0.96417 0.93941 1.00751 1.21002 0.93734 0.96165 1.00101 1.20564 0.93541 0.96337 0.98591 1.20662 0.97340 0.95379 0.98936 1.21009 0.98027 0.96837 0.98274 1.21000 0.92570 1.00089 1.00510 1.20587 0.98343 0.95019 0.98782 1.20638 0.95802 0.95370 0.97501 1.20929 0.95556 0.96113 0.97716 1.23228 1.00486 0.98920 0.95945 1.21147 0.89959 0.99899 0.83691 1.44430 1.07805 1.78874 1.01778 1.19006 0.89495 1.37624 0.88948 0.90715 1.24742 0.97707 1.01969 0.95966 1.69940 1.24283 1.53885 1.09131 0.86237 0.81923 0.78334 0.79529 1.21219 1.21621 1.21277 1.21860 0.87595 0.94838 0.95017 0.92007 0.90313 0.93291 0.76727 0.87946 0.88809 0.89849 0.86093 0.86048 0.86112 0.86339 0.90523 0.88120 0.91781 0.90947 0.93674 0.93871 0.93839 0.95816 0.93269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.59 37.16 0.32 -2.02 16 2 C 0.16 2.72 0.82 -129.67 -0.11 2.61 16 3 N -0.70 -10.98 5.18 -45.62 -0.24 -11.22 16 4 C 0.53 8.30 6.42 -10.98 -0.07 8.23 16 5 O -0.54 -10.05 12.33 5.55 0.07 -9.99 16 6 C -0.11 -1.38 3.47 -90.35 -0.31 -1.70 16 7 C -0.07 -0.97 6.31 -26.85 -0.17 -1.14 16 8 C -0.09 -1.19 6.14 -104.21 -0.64 -1.83 16 9 C -0.11 -1.28 10.04 -39.54 -0.40 -1.67 16 10 C -0.12 -1.33 10.05 -39.63 -0.40 -1.72 16 11 C -0.12 -1.28 10.05 -39.63 -0.40 -1.68 16 12 C -0.11 -1.23 10.04 -39.54 -0.40 -1.62 16 13 C -0.09 -1.18 6.14 -104.20 -0.64 -1.82 16 14 C -0.07 -0.83 6.10 -26.84 -0.16 -0.99 16 15 C -0.15 -2.57 5.97 -24.90 -0.15 -2.72 16 16 C 0.18 4.13 5.36 -3.07 -0.02 4.11 16 17 N -0.60 -15.23 3.39 -170.07 -0.58 -15.81 16 18 C -0.22 -6.23 10.28 -15.06 -0.15 -6.39 16 19 H 0.07 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.23 5.49 -17.42 -0.10 -0.32 16 21 N -0.92 -26.65 10.31 55.49 0.57 -26.08 16 22 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 26 C 0.13 2.91 6.17 -2.53 -0.02 2.90 16 27 H 0.06 0.90 8.07 -51.93 -0.42 0.48 16 28 H 0.08 1.31 5.92 -51.93 -0.31 1.01 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.40 5.61 8.51 -40.82 -0.35 5.27 16 31 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.52 7.89 -51.93 -0.41 1.11 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 1.47 6.99 -51.93 -0.36 1.10 16 40 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 41 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 42 H 0.05 1.14 7.40 -51.93 -0.38 0.75 16 43 H 0.04 1.13 7.49 -51.93 -0.39 0.74 16 44 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.02 0.53 7.99 -51.93 -0.41 0.11 16 46 H 0.05 1.15 6.86 -51.93 -0.36 0.80 16 LS Contribution 363.69 15.07 5.48 5.48 Total: -1.00 -31.65 363.69 -10.68 -42.33 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.16 Total: 5.83 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -3.81 Total: -7.78 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -0.24 Total: -53.11 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.07 Total: -9.99 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.65 -10.68 -42.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046654096.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.576 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds