Wall clock time and date at job start Tue Mar 31 2020 11:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 110.88855 * 2 1 4 4 C 1.34778 * 119.99716 * 56.12172 * 3 2 1 5 5 O 1.21284 * 120.00222 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99832 * 179.97438 * 4 3 2 7 7 C 1.54345 * 110.81960 * 292.96791 * 6 4 3 8 8 C 1.51367 * 105.17065 * 215.42447 * 7 6 4 9 9 C 1.38497 * 130.39543 * 197.18980 * 8 7 6 10 10 C 1.38094 * 120.21687 * 180.02562 * 9 8 7 11 11 C 1.38254 * 119.93648 * 0.02562 * 10 9 8 12 12 C 1.38101 * 119.93518 * 359.97438 * 11 10 9 13 13 C 1.38219 * 109.75734 * 17.19104 * 8 7 6 14 14 C 1.51373 * 109.75920 * 0.02562 * 13 8 7 15 15 C 1.55160 * 111.00303 * 236.11845 * 2 1 3 16 16 C 1.54316 * 102.94268 * 206.39072 * 15 2 1 17 17 N 1.47026 * 107.27365 * 22.19228 * 16 15 2 18 18 C 1.36933 * 125.65326 * 180.79632 * 17 16 15 19 19 H 1.08001 * 120.00302 * 180.02562 * 18 17 16 20 20 C 1.38819 * 119.99866 * 0.02562 * 18 17 16 21 21 N 1.31626 * 119.99573 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00125 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47395 * 60.00020 * 22 20 18 24 24 H 1.48503 * 109.47153 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47373 * 299.99913 * 22 20 18 26 26 C 1.47425 * 108.70074 * 1.05989 * 17 16 15 27 27 H 1.08997 * 109.47466 * 183.87982 * 1 2 3 28 28 H 1.08999 * 109.47096 * 303.88650 * 1 2 3 29 29 H 1.09006 * 109.46602 * 63.87954 * 1 2 3 30 30 H 0.96993 * 120.00105 * 236.11525 * 3 2 1 31 31 H 1.09001 * 110.72778 * 56.58751 * 6 4 3 32 32 H 1.08995 * 110.30622 * 334.35248 * 7 6 4 33 33 H 1.09001 * 110.30096 * 96.50466 * 7 6 4 34 34 H 1.07999 * 119.88765 * 0.02562 * 9 8 7 35 35 H 1.07998 * 120.03335 * 180.02562 * 10 9 8 36 36 H 1.08002 * 120.03174 * 179.97438 * 11 10 9 37 37 H 1.07995 * 119.89405 * 180.02562 * 12 11 10 38 38 H 1.09003 * 110.30040 * 223.88926 * 14 13 8 39 39 H 1.08997 * 110.30583 * 101.73238 * 14 13 8 40 40 H 1.08997 * 110.71793 * 88.02402 * 15 2 1 41 41 H 1.09002 * 110.71871 * 324.75748 * 15 2 1 42 42 H 1.09004 * 109.88447 * 262.78098 * 16 15 2 43 43 H 1.09000 * 109.88516 * 141.60887 * 16 15 2 44 44 H 0.97000 * 119.99477 * 180.02562 * 21 20 18 45 45 H 1.09001 * 110.36478 * 94.71036 * 26 17 16 46 46 H 1.08998 * 110.36859 * 217.03414 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0524 1.3687 0.0000 4 6 1.6848 2.2302 0.9691 5 8 0.9211 1.8726 1.8408 6 6 2.2225 3.6381 0.9694 7 6 3.7415 3.6450 1.2429 8 6 3.9904 4.8916 2.0646 9 6 5.1669 5.5736 2.3270 10 6 5.1524 6.7059 3.1174 11 6 3.9601 7.1608 3.6493 12 6 2.7859 6.4821 3.3889 13 6 2.7982 5.3469 2.5956 14 6 1.6668 4.4370 2.1676 15 6 2.0862 -0.8075 -1.2025 16 6 3.4678 -1.2732 -0.6969 17 7 3.4280 -1.2424 0.7725 18 6 4.4638 -1.5698 1.6061 19 1 4.3336 -1.5148 2.6768 20 6 5.6815 -1.9726 1.0748 21 7 5.8404 -2.0391 -0.2301 22 14 7.0944 -2.4200 2.2118 23 1 6.6900 -3.5537 3.0816 24 1 8.2752 -2.8145 1.4024 25 1 7.4411 -1.2481 3.0554 26 6 2.0860 -0.8066 1.2000 27 1 -0.3634 -1.0253 0.0695 28 1 -0.3633 0.5730 0.8531 29 1 -0.3633 0.4525 -0.9228 30 1 2.6628 1.6548 -0.6973 31 1 1.9928 4.1390 0.0290 32 1 4.0285 2.7571 1.8062 33 1 4.2945 3.6938 0.3048 34 1 6.0987 5.2187 1.9122 35 1 6.0715 7.2357 3.3197 36 1 3.9470 8.0460 4.2680 37 1 1.8548 6.8382 3.8044 38 1 0.8029 5.0266 1.8604 39 1 1.3959 3.7625 2.9798 40 1 2.1915 -0.1694 -2.0799 41 1 1.4470 -1.6630 -1.4212 42 1 4.2425 -0.5983 -1.0609 43 1 3.6657 -2.2883 -1.0411 44 1 6.6911 -2.3209 -0.6013 45 1 1.4531 -1.6707 1.4022 46 1 2.1567 -0.1720 2.0834 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046654096.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:53 Heat of formation + Delta-G solvation = -6.806510 kcal Electronic energy + Delta-G solvation = -26669.767909 eV Core-core repulsion = 23137.583177 eV Total energy + Delta-G solvation = -3532.184732 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.71988 -40.57729 -38.89576 -36.36550 -35.63909 -33.64340 -32.33579 -31.80251 -30.47249 -29.87696 -28.22547 -27.51762 -25.57726 -24.66072 -22.60900 -22.11824 -21.83970 -21.10270 -20.37242 -18.96474 -18.22471 -17.15852 -17.06460 -16.78686 -16.63503 -16.02167 -15.70537 -15.64446 -15.36339 -15.09489 -14.31733 -14.18947 -14.08568 -13.89390 -13.87087 -13.69487 -13.57629 -13.40065 -13.16501 -13.07434 -12.80087 -12.75090 -12.24385 -12.16891 -12.10148 -12.09260 -12.02538 -11.95149 -11.69569 -11.67815 -11.53068 -10.71640 -10.52518 -9.96242 -9.72120 -9.43330 -8.86637 -7.86405 -5.19838 0.43039 0.47445 1.42443 1.44435 1.51031 1.68055 2.24599 2.47186 2.83907 3.31537 3.32578 3.48718 3.60878 3.71787 3.93599 4.03579 4.06028 4.13690 4.17191 4.20613 4.30362 4.32736 4.61816 4.64476 4.67929 4.71205 4.73008 4.81201 4.85576 4.87464 4.91785 4.93295 5.02669 5.07362 5.11205 5.18006 5.24764 5.39256 5.41927 5.54698 5.61119 5.65639 5.71420 5.72849 5.79348 6.11604 6.19442 6.67910 7.11358 7.34354 7.76967 8.41325 9.23029 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011400 B = 0.004511 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.646013 B = 6206.194018 C = 8022.419243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.167 3.833 3 N -0.696 5.696 4 C 0.524 3.476 5 O -0.570 6.570 6 C -0.099 4.099 7 C -0.068 4.068 8 C -0.113 4.113 9 C -0.121 4.121 10 C -0.126 4.126 11 C -0.122 4.122 12 C -0.116 4.116 13 C -0.107 4.107 14 C -0.062 4.062 15 C -0.129 4.129 16 C 0.186 3.814 17 N -0.620 5.620 18 C -0.243 4.243 19 H 0.066 0.934 20 C -0.054 4.054 21 N -0.943 5.943 22 Si 0.970 3.030 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.282 1.282 26 C 0.131 3.869 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.408 0.592 31 H 0.136 0.864 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.126 0.874 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.020 0.980 43 H 0.007 0.993 44 H 0.248 0.752 45 H 0.022 0.978 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.508 18.145 -0.862 19.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.079 3.921 3 N -0.346 5.346 4 C 0.311 3.689 5 O -0.450 6.450 6 C -0.120 4.120 7 C -0.106 4.106 8 C -0.113 4.113 9 C -0.139 4.139 10 C -0.143 4.143 11 C -0.140 4.140 12 C -0.134 4.134 13 C -0.107 4.107 14 C -0.099 4.099 15 C -0.167 4.167 16 C 0.061 3.939 17 N -0.346 5.346 18 C -0.372 4.372 19 H 0.084 0.916 20 C -0.248 4.248 21 N -0.592 5.592 22 Si 0.798 3.202 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.208 1.208 26 C 0.005 3.995 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.244 0.756 31 H 0.153 0.847 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.144 0.856 35 H 0.164 0.836 36 H 0.168 0.832 37 H 0.156 0.844 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.038 0.962 43 H 0.026 0.974 44 H 0.057 0.943 45 H 0.039 0.961 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.837 17.793 -0.280 19.445 hybrid contribution 1.509 -0.786 0.432 1.756 sum -6.328 17.007 0.152 18.146 Atomic orbital electron populations 1.21954 0.91923 1.03003 1.03244 1.21342 0.94169 0.81158 0.95386 1.45783 1.48519 1.11058 1.29279 1.20648 0.80200 0.87565 0.80500 1.90611 1.37543 1.79171 1.37692 1.21983 0.95543 0.92052 1.02460 1.20891 0.94440 0.94973 1.00249 1.20641 0.94443 0.96564 0.99632 1.20894 0.97247 0.96134 0.99620 1.21360 0.99394 0.96240 0.97335 1.21399 0.91947 1.00637 0.99996 1.20914 0.99747 0.94487 0.98216 1.20751 0.95425 0.96175 0.98373 1.20864 0.96450 0.95844 0.96774 1.23100 0.96815 1.00012 0.96776 1.20944 0.92941 0.97422 0.82610 1.44663 1.08475 1.78797 1.02636 1.19249 0.90856 1.37921 0.89208 0.91618 1.25459 0.99773 1.02166 0.97411 1.70133 1.24411 1.54310 1.10338 0.85291 0.78974 0.78051 0.77851 1.20735 1.21347 1.20840 1.21964 0.86353 0.94946 0.96254 0.91157 0.91782 0.90468 0.75636 0.84654 0.92720 0.88638 0.85638 0.83615 0.83172 0.84374 0.88505 0.90757 0.88352 0.89250 0.96217 0.97438 0.94288 0.96057 0.95794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 8.59 71.98 0.62 -3.45 16 2 C 0.17 5.65 0.82 5.00 0.00 5.65 16 3 N -0.70 -21.38 5.18 -416.63 -2.16 -23.54 16 4 C 0.52 16.44 6.42 87.66 0.56 17.00 16 5 O -0.57 -21.60 12.33 -3.04 -0.04 -21.64 16 6 C -0.10 -2.44 3.47 -10.62 -0.04 -2.48 16 7 C -0.07 -1.85 6.31 30.52 0.19 -1.66 16 8 C -0.11 -2.95 6.14 -19.60 -0.12 -3.07 16 9 C -0.12 -2.85 10.04 22.30 0.22 -2.63 16 10 C -0.13 -2.43 10.05 22.24 0.22 -2.21 16 11 C -0.12 -2.20 10.05 22.24 0.22 -1.98 16 12 C -0.12 -2.37 10.04 22.30 0.22 -2.15 16 13 C -0.11 -2.63 6.14 -19.59 -0.12 -2.75 16 14 C -0.06 -1.53 6.10 30.52 0.19 -1.34 16 15 C -0.13 -4.28 5.97 31.78 0.19 -4.10 16 16 C 0.19 8.78 5.36 86.73 0.47 9.24 16 17 N -0.62 -32.33 3.39 -691.98 -2.35 -34.67 16 18 C -0.24 -14.12 10.28 84.04 0.86 -13.25 16 19 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 20 C -0.05 -3.12 5.49 84.86 0.47 -2.66 16 21 N -0.94 -55.76 10.31 21.65 0.22 -55.54 16 22 Si 0.97 46.62 29.55 68.60 2.03 48.65 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 25 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 26 C 0.13 5.85 6.17 86.86 0.54 6.38 16 27 H 0.07 1.88 8.07 -2.39 -0.02 1.86 16 28 H 0.06 2.06 5.92 -2.39 -0.01 2.05 16 29 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.41 10.97 8.51 -92.71 -0.79 10.18 16 31 H 0.14 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.05 1.89 7.89 -2.39 -0.02 1.87 16 33 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.13 2.71 8.06 -2.91 -0.02 2.68 16 35 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 37 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.07 2.23 6.99 -2.39 -0.02 2.21 16 40 H 0.10 2.65 8.09 -2.39 -0.02 2.63 16 41 H 0.09 2.72 8.04 -2.39 -0.02 2.71 16 42 H 0.02 1.02 7.40 -2.38 -0.02 1.00 16 43 H 0.01 0.40 7.49 -2.39 -0.02 0.38 16 44 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 45 H 0.02 0.97 7.99 -2.39 -0.02 0.95 16 46 H 0.02 1.17 6.86 -2.39 -0.02 1.15 16 Total: -1.00 -71.53 363.69 2.59 -68.94 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.19 Total: 23.25 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: 4.70 Total: -5.44 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -4.28 Total: -113.76 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.04 Total: -21.64 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -71.53 2.59 -68.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046654096.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.129 kcal (2) G-P(sol) polarization free energy of solvation -71.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds