Wall clock time and date at job start Tue Mar 31 2020 11:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 110.88534 * 2 1 4 4 C 1.34774 * 119.99715 * 303.87958 * 3 2 1 5 5 O 1.21288 * 120.00157 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00172 * 180.02562 * 4 3 2 7 7 C 1.54341 * 110.82695 * 180.02562 * 6 4 3 8 8 C 1.51373 * 105.17303 * 144.57401 * 7 6 4 9 9 C 1.38497 * 130.39146 * 162.82923 * 8 7 6 10 10 C 1.38105 * 120.21201 * 179.97438 * 9 8 7 11 11 C 1.38254 * 119.93674 * 0.02562 * 10 9 8 12 12 C 1.38101 * 119.93156 * 359.97438 * 11 10 9 13 13 C 1.38217 * 109.75611 * 342.82270 * 8 7 6 14 14 C 1.51371 * 109.76018 * 0.03558 * 13 8 7 15 15 C 1.55153 * 111.00403 * 123.87945 * 2 1 3 16 16 C 1.54328 * 102.94454 * 153.61424 * 15 2 1 17 17 N 1.47023 * 107.26731 * 337.80729 * 16 15 2 18 18 C 1.36936 * 125.64901 * 178.89402 * 17 16 15 19 19 H 1.07993 * 120.00185 * 180.02562 * 18 17 16 20 20 C 1.38812 * 119.99530 * 0.02562 * 18 17 16 21 21 N 1.31618 * 120.00531 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99800 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47161 * 90.00434 * 22 20 18 24 24 H 1.48495 * 109.47057 * 210.00179 * 22 20 18 25 25 H 1.48502 * 109.47007 * 330.00196 * 22 20 18 26 26 C 1.47426 * 108.70346 * 358.93959 * 17 16 15 27 27 H 1.09003 * 109.47341 * 59.30338 * 1 2 3 28 28 H 1.09003 * 109.47070 * 179.30308 * 1 2 3 29 29 H 1.09000 * 109.47234 * 299.30223 * 1 2 3 30 30 H 0.96991 * 119.99892 * 123.87714 * 3 2 1 31 31 H 1.09005 * 110.72858 * 56.59068 * 6 4 3 32 32 H 1.08997 * 110.30370 * 25.64755 * 7 6 4 33 33 H 1.09003 * 110.30305 * 263.49979 * 7 6 4 34 34 H 1.08000 * 119.88977 * 0.24909 * 9 8 7 35 35 H 1.08005 * 120.02773 * 179.97438 * 10 9 8 36 36 H 1.07994 * 120.03207 * 179.97438 * 11 10 9 37 37 H 1.08002 * 119.88483 * 180.02562 * 12 11 10 38 38 H 1.09001 * 110.30627 * 136.12380 * 14 13 8 39 39 H 1.08995 * 110.30084 * 258.27709 * 14 13 8 40 40 H 1.08998 * 110.71910 * 271.97850 * 15 2 1 41 41 H 1.09001 * 110.72348 * 35.07112 * 15 2 1 42 42 H 1.08999 * 109.88046 * 97.21886 * 16 15 2 43 43 H 1.08998 * 109.88406 * 218.38931 * 16 15 2 44 44 H 0.96997 * 120.00325 * 179.97438 * 21 20 18 45 45 H 1.08998 * 110.36697 * 265.28591 * 26 17 16 46 46 H 1.09007 * 110.36363 * 142.96819 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.6846 2.2303 -0.9690 5 8 0.9210 1.8725 -1.8408 6 6 2.2222 3.6381 -0.9695 7 6 1.6659 4.4376 -2.1667 8 6 1.4842 5.8490 -1.6506 9 6 1.3233 7.0415 -2.3361 10 6 1.1720 8.2265 -1.6432 11 6 1.1816 8.2234 -0.2607 12 6 1.3420 7.0352 0.4246 13 6 1.4937 5.8458 -0.2684 14 6 1.6832 4.4323 0.2388 15 6 2.0861 -0.8074 1.2025 16 6 3.4679 -1.2731 0.6969 17 7 3.4280 -1.2422 -0.7725 18 6 4.4658 -1.5639 -1.6059 19 1 4.3356 -1.5087 -2.6766 20 6 5.6851 -1.9611 -1.0746 21 7 5.8437 -2.0289 0.2303 22 14 7.1011 -2.3992 -2.2115 23 1 7.9031 -1.1820 -2.4952 24 1 7.9622 -3.4184 -1.5595 25 1 6.5638 -2.9456 -3.4835 26 6 2.0860 -0.8065 -1.2000 27 1 -0.3634 0.5246 -0.8837 28 1 -0.3633 -1.0276 -0.0125 29 1 -0.3634 0.5030 0.8962 30 1 2.6626 1.6549 0.6974 31 1 3.3122 3.6348 -0.9782 32 1 0.7084 4.0251 -2.4848 33 1 2.3770 4.4255 -2.9928 34 1 1.3117 7.0442 -3.4161 35 1 1.0471 9.1549 -2.1809 36 1 1.0639 9.1492 0.2827 37 1 1.3490 7.0336 1.5046 38 1 2.4052 4.4170 1.0553 39 1 0.7304 4.0176 0.5677 40 1 2.1915 -0.1693 2.0798 41 1 1.4454 -1.6612 1.4232 42 1 4.2425 -0.5981 1.0609 43 1 3.6659 -2.2881 1.0412 44 1 6.6956 -2.3068 0.6015 45 1 1.4532 -1.6706 -1.4022 46 1 2.1568 -0.1720 -2.0835 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046654098.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:58 Heat of formation + Delta-G solvation = 10.921051 kcal Electronic energy + Delta-G solvation = -26373.547672 eV Core-core repulsion = 22842.131665 eV Total energy + Delta-G solvation = -3531.416007 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.64770 -39.43226 -37.41614 -35.39146 -33.92237 -31.95790 -31.51142 -30.20630 -29.09896 -28.59524 -27.36697 -25.66181 -24.08809 -23.36513 -21.64023 -21.06113 -20.36099 -19.83130 -18.98401 -17.32215 -16.70943 -16.29990 -15.89176 -15.55513 -15.06613 -14.62771 -14.59892 -14.26369 -13.72109 -13.54316 -13.31601 -13.23591 -12.98103 -12.86534 -12.76595 -12.31086 -12.01586 -11.89097 -11.74589 -11.65762 -11.36083 -11.26944 -11.18369 -10.91969 -10.89170 -10.86060 -10.36553 -10.33801 -10.07666 -9.98230 -9.65550 -9.20294 -8.94780 -8.65651 -8.61735 -8.50737 -6.79444 -5.70306 -3.02191 1.21027 1.24726 2.93825 3.40590 3.46271 3.48014 3.48099 3.61470 4.21964 4.44763 4.51572 4.83634 4.85657 4.89289 4.92712 5.10236 5.11855 5.35863 5.38993 5.41548 5.47212 5.49543 5.62493 5.63384 5.66584 5.73713 5.74975 5.95867 6.02063 6.03828 6.12568 6.16634 6.18529 6.29533 6.35224 6.38429 6.41634 6.53037 6.55690 6.69963 6.81173 6.85697 7.14956 7.55200 7.57088 7.80685 7.93620 8.26789 8.59752 9.24267 9.84339 10.50424 11.41695 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016647 B = 0.003333 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.622965 B = 8399.814705 C = 9149.133006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.156 3.844 3 N -0.698 5.698 4 C 0.527 3.473 5 O -0.540 6.540 6 C -0.111 4.111 7 C -0.068 4.068 8 C -0.088 4.088 9 C -0.109 4.109 10 C -0.121 4.121 11 C -0.125 4.125 12 C -0.106 4.106 13 C -0.096 4.096 14 C -0.070 4.070 15 C -0.147 4.147 16 C 0.178 3.822 17 N -0.603 5.603 18 C -0.221 4.221 19 H 0.076 0.924 20 C -0.010 4.010 21 N -0.924 5.924 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.134 3.866 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.399 0.601 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.045 0.955 43 H 0.043 0.957 44 H 0.251 0.749 45 H 0.025 0.975 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.309 17.334 2.630 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.070 3.930 3 N -0.348 5.348 4 C 0.313 3.687 5 O -0.417 6.417 6 C -0.133 4.133 7 C -0.105 4.105 8 C -0.088 4.088 9 C -0.127 4.127 10 C -0.139 4.139 11 C -0.143 4.143 12 C -0.124 4.124 13 C -0.096 4.096 14 C -0.107 4.107 15 C -0.186 4.186 16 C 0.053 3.947 17 N -0.329 5.329 18 C -0.350 4.350 19 H 0.094 0.906 20 C -0.206 4.206 21 N -0.573 5.573 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.007 3.993 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.233 0.767 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.042 0.958 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.625 16.956 2.026 20.113 hybrid contribution 1.273 -0.082 -0.141 1.283 sum -9.353 16.875 1.886 19.385 Atomic orbital electron populations 1.22030 0.94279 1.02136 1.02583 1.21486 0.92657 0.80883 0.98019 1.45795 1.48461 1.11700 1.28799 1.20079 0.80902 0.86388 0.81348 1.90624 1.36027 1.78328 1.36754 1.21993 1.02270 0.92351 0.96661 1.20945 1.03268 0.89342 0.96968 1.20676 0.98790 0.95019 0.94353 1.20638 1.00756 0.91393 0.99879 1.21027 1.00790 0.97720 0.94391 1.21005 1.01209 0.97673 0.94429 1.20611 1.00663 0.91410 0.99729 1.20540 1.00050 0.94661 0.94375 1.20962 1.02035 0.90526 0.97158 1.23228 1.00465 0.98933 0.95936 1.21148 0.89967 0.99904 0.83691 1.44444 1.07741 1.78953 1.01805 1.19059 0.89312 1.37624 0.88997 0.90616 1.24760 0.97744 1.02040 0.96007 1.69944 1.24087 1.54087 1.09151 0.86135 0.82372 0.77773 0.79617 1.21710 1.21726 1.20734 1.21864 0.87589 0.94858 0.95029 0.90373 0.92021 0.93299 0.76722 0.87440 0.88129 0.90203 0.86182 0.86029 0.86040 0.86254 0.89854 0.89717 0.91799 0.90944 0.93658 0.93872 0.93879 0.95752 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.52 37.16 0.32 -2.01 16 2 C 0.16 2.72 0.82 -129.67 -0.11 2.62 16 3 N -0.70 -11.00 5.18 -45.63 -0.24 -11.24 16 4 C 0.53 8.32 6.42 -10.99 -0.07 8.25 16 5 O -0.54 -10.05 12.36 5.55 0.07 -9.98 16 6 C -0.11 -1.41 3.46 -90.38 -0.31 -1.72 16 7 C -0.07 -0.85 6.10 -26.85 -0.16 -1.02 16 8 C -0.09 -1.04 6.14 -104.20 -0.64 -1.68 16 9 C -0.11 -1.14 10.04 -39.53 -0.40 -1.53 16 10 C -0.12 -1.12 10.05 -39.62 -0.40 -1.52 16 11 C -0.13 -1.14 10.05 -39.63 -0.40 -1.54 16 12 C -0.11 -1.05 10.04 -39.54 -0.40 -1.45 16 13 C -0.10 -1.08 6.14 -104.21 -0.64 -1.72 16 14 C -0.07 -0.74 6.31 -26.87 -0.17 -0.91 16 15 C -0.15 -2.57 5.97 -24.90 -0.15 -2.72 16 16 C 0.18 4.15 5.36 -3.06 -0.02 4.13 16 17 N -0.60 -15.34 3.39 -170.07 -0.58 -15.91 16 18 C -0.22 -6.24 10.28 -15.06 -0.15 -6.39 16 19 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -26.81 10.31 55.49 0.57 -26.24 16 22 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 26 C 0.13 2.91 6.17 -2.53 -0.02 2.90 16 27 H 0.08 1.31 6.01 -51.93 -0.31 1.00 16 28 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.40 5.63 8.51 -40.82 -0.35 5.28 16 31 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.10 1.39 6.98 -51.93 -0.36 1.03 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.91 7.88 -51.93 -0.41 0.50 16 40 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 41 H 0.07 1.19 8.04 -51.93 -0.42 0.78 16 42 H 0.05 1.15 7.38 -51.93 -0.38 0.77 16 43 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 44 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.02 0.54 8.03 -51.93 -0.42 0.12 16 46 H 0.05 1.16 6.87 -51.92 -0.36 0.81 16 LS Contribution 363.83 15.07 5.48 5.48 Total: -1.00 -31.96 363.83 -10.69 -42.64 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -7.17 Total: 4.65 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -3.81 Total: -6.68 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.24 Total: -53.40 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.07 Total: -9.98 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.96 -10.69 -42.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046654098.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.564 kcal (2) G-P(sol) polarization free energy of solvation -31.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds