Wall clock time and date at job start Tue Mar 31 2020 11:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 110.88534 * 2 1 4 4 C 1.34774 * 119.99715 * 303.87958 * 3 2 1 5 5 O 1.21288 * 120.00157 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00172 * 180.02562 * 4 3 2 7 7 C 1.54341 * 110.82695 * 180.02562 * 6 4 3 8 8 C 1.51373 * 105.17303 * 144.57401 * 7 6 4 9 9 C 1.38497 * 130.39146 * 162.82923 * 8 7 6 10 10 C 1.38105 * 120.21201 * 179.97438 * 9 8 7 11 11 C 1.38254 * 119.93674 * 0.02562 * 10 9 8 12 12 C 1.38101 * 119.93156 * 359.97438 * 11 10 9 13 13 C 1.38217 * 109.75611 * 342.82270 * 8 7 6 14 14 C 1.51371 * 109.76018 * 0.03558 * 13 8 7 15 15 C 1.55153 * 111.00403 * 123.87945 * 2 1 3 16 16 C 1.54328 * 102.94454 * 153.61424 * 15 2 1 17 17 N 1.47023 * 107.26731 * 337.80729 * 16 15 2 18 18 C 1.36936 * 125.64901 * 178.89402 * 17 16 15 19 19 H 1.07993 * 120.00185 * 180.02562 * 18 17 16 20 20 C 1.38812 * 119.99530 * 0.02562 * 18 17 16 21 21 N 1.31618 * 120.00531 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99800 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47161 * 90.00434 * 22 20 18 24 24 H 1.48495 * 109.47057 * 210.00179 * 22 20 18 25 25 H 1.48502 * 109.47007 * 330.00196 * 22 20 18 26 26 C 1.47426 * 108.70346 * 358.93959 * 17 16 15 27 27 H 1.09003 * 109.47341 * 59.30338 * 1 2 3 28 28 H 1.09003 * 109.47070 * 179.30308 * 1 2 3 29 29 H 1.09000 * 109.47234 * 299.30223 * 1 2 3 30 30 H 0.96991 * 119.99892 * 123.87714 * 3 2 1 31 31 H 1.09005 * 110.72858 * 56.59068 * 6 4 3 32 32 H 1.08997 * 110.30370 * 25.64755 * 7 6 4 33 33 H 1.09003 * 110.30305 * 263.49979 * 7 6 4 34 34 H 1.08000 * 119.88977 * 0.24909 * 9 8 7 35 35 H 1.08005 * 120.02773 * 179.97438 * 10 9 8 36 36 H 1.07994 * 120.03207 * 179.97438 * 11 10 9 37 37 H 1.08002 * 119.88483 * 180.02562 * 12 11 10 38 38 H 1.09001 * 110.30627 * 136.12380 * 14 13 8 39 39 H 1.08995 * 110.30084 * 258.27709 * 14 13 8 40 40 H 1.08998 * 110.71910 * 271.97850 * 15 2 1 41 41 H 1.09001 * 110.72348 * 35.07112 * 15 2 1 42 42 H 1.08999 * 109.88046 * 97.21886 * 16 15 2 43 43 H 1.08998 * 109.88406 * 218.38931 * 16 15 2 44 44 H 0.96997 * 120.00325 * 179.97438 * 21 20 18 45 45 H 1.08998 * 110.36697 * 265.28591 * 26 17 16 46 46 H 1.09007 * 110.36363 * 142.96819 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.6846 2.2303 -0.9690 5 8 0.9210 1.8725 -1.8408 6 6 2.2222 3.6381 -0.9695 7 6 1.6659 4.4376 -2.1667 8 6 1.4842 5.8490 -1.6506 9 6 1.3233 7.0415 -2.3361 10 6 1.1720 8.2265 -1.6432 11 6 1.1816 8.2234 -0.2607 12 6 1.3420 7.0352 0.4246 13 6 1.4937 5.8458 -0.2684 14 6 1.6832 4.4323 0.2388 15 6 2.0861 -0.8074 1.2025 16 6 3.4679 -1.2731 0.6969 17 7 3.4280 -1.2422 -0.7725 18 6 4.4658 -1.5639 -1.6059 19 1 4.3356 -1.5087 -2.6766 20 6 5.6851 -1.9611 -1.0746 21 7 5.8437 -2.0289 0.2303 22 14 7.1011 -2.3992 -2.2115 23 1 7.9031 -1.1820 -2.4952 24 1 7.9622 -3.4184 -1.5595 25 1 6.5638 -2.9456 -3.4835 26 6 2.0860 -0.8065 -1.2000 27 1 -0.3634 0.5246 -0.8837 28 1 -0.3633 -1.0276 -0.0125 29 1 -0.3634 0.5030 0.8962 30 1 2.6626 1.6549 0.6974 31 1 3.3122 3.6348 -0.9782 32 1 0.7084 4.0251 -2.4848 33 1 2.3770 4.4255 -2.9928 34 1 1.3117 7.0442 -3.4161 35 1 1.0471 9.1549 -2.1809 36 1 1.0639 9.1492 0.2827 37 1 1.3490 7.0336 1.5046 38 1 2.4052 4.4170 1.0553 39 1 0.7304 4.0176 0.5677 40 1 2.1915 -0.1693 2.0798 41 1 1.4454 -1.6612 1.4232 42 1 4.2425 -0.5981 1.0609 43 1 3.6659 -2.2881 1.0412 44 1 6.6956 -2.3068 0.6015 45 1 1.4532 -1.6706 -1.4022 46 1 2.1568 -0.1720 -2.0835 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046654098.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:57 Heat of formation + Delta-G solvation = -7.252453 kcal Electronic energy + Delta-G solvation = -26374.335735 eV Core-core repulsion = 22842.131665 eV Total energy + Delta-G solvation = -3532.204069 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.71696 -40.56822 -38.89466 -36.35045 -35.64270 -33.64218 -32.31777 -31.80611 -30.46772 -29.87092 -28.21591 -27.51437 -25.55652 -24.66426 -22.60059 -22.09032 -21.82829 -21.11349 -20.37978 -18.98027 -18.18169 -17.16021 -17.05071 -16.81523 -16.64835 -15.93752 -15.73850 -15.64682 -15.44857 -14.94596 -14.36901 -14.11671 -14.09768 -13.91234 -13.85658 -13.69915 -13.49901 -13.41564 -13.25378 -12.96841 -12.84434 -12.73919 -12.28610 -12.14297 -12.09992 -12.05757 -12.00201 -11.94684 -11.69133 -11.66085 -11.53598 -10.71743 -10.53146 -9.96604 -9.69784 -9.41296 -8.86534 -7.86116 -5.19789 0.44986 0.49640 1.43827 1.44724 1.53731 1.68675 2.24475 2.47871 2.85890 3.31832 3.33136 3.48195 3.63184 3.71551 3.89969 4.03729 4.06376 4.13827 4.19337 4.20678 4.32036 4.37471 4.64685 4.65496 4.68960 4.71008 4.74771 4.81921 4.87156 4.87303 4.92009 4.93421 5.02917 5.07497 5.10152 5.19028 5.25051 5.39059 5.42771 5.56384 5.63487 5.65725 5.71585 5.74440 5.79372 6.13442 6.19813 6.67909 7.11592 7.34261 7.77241 8.41509 9.23568 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016647 B = 0.003333 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.622965 B = 8399.814705 C = 9149.133006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.167 3.833 3 N -0.696 5.696 4 C 0.525 3.475 5 O -0.571 6.571 6 C -0.107 4.107 7 C -0.065 4.065 8 C -0.111 4.111 9 C -0.122 4.122 10 C -0.124 4.124 11 C -0.125 4.125 12 C -0.113 4.113 13 C -0.110 4.110 14 C -0.060 4.060 15 C -0.128 4.128 16 C 0.185 3.815 17 N -0.621 5.621 18 C -0.242 4.242 19 H 0.068 0.932 20 C -0.058 4.058 21 N -0.945 5.945 22 Si 0.973 3.027 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.276 1.276 26 C 0.130 3.870 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.408 0.592 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.128 0.872 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.020 0.980 43 H 0.007 0.993 44 H 0.248 0.752 45 H 0.023 0.977 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.948 19.261 3.898 22.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.080 3.920 3 N -0.346 5.346 4 C 0.312 3.688 5 O -0.451 6.451 6 C -0.128 4.128 7 C -0.103 4.103 8 C -0.111 4.111 9 C -0.140 4.140 10 C -0.142 4.142 11 C -0.143 4.143 12 C -0.131 4.131 13 C -0.110 4.110 14 C -0.098 4.098 15 C -0.167 4.167 16 C 0.061 3.939 17 N -0.347 5.347 18 C -0.371 4.371 19 H 0.086 0.914 20 C -0.252 4.252 21 N -0.594 5.594 22 Si 0.802 3.198 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.201 1.201 26 C 0.004 3.996 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.244 0.756 31 H 0.128 0.872 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.146 0.854 35 H 0.164 0.836 36 H 0.166 0.834 37 H 0.158 0.842 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.038 0.962 43 H 0.025 0.975 44 H 0.057 0.943 45 H 0.040 0.960 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -11.281 18.902 3.302 22.259 hybrid contribution 1.458 -0.654 -0.602 1.708 sum -9.823 18.247 2.700 20.899 Atomic orbital electron populations 1.21944 0.92006 1.02968 1.03118 1.21335 0.94092 0.81148 0.95448 1.45779 1.48607 1.10992 1.29216 1.20594 0.80216 0.87390 0.80559 1.90613 1.37488 1.79122 1.37850 1.21947 1.02212 0.90539 0.98109 1.20843 1.02127 0.90371 0.96931 1.20690 1.00612 0.94738 0.95017 1.20884 1.00882 0.91580 1.00621 1.21372 0.99834 0.98126 0.94878 1.21401 0.99819 0.98530 0.94559 1.20915 1.00138 0.91092 1.00913 1.20679 1.00749 0.95316 0.94216 1.20908 1.02414 0.89954 0.96481 1.23097 0.96789 1.00027 0.96766 1.20944 0.92941 0.97420 0.82635 1.44687 1.08427 1.78897 1.02664 1.19312 0.90619 1.37883 0.89300 0.91398 1.25509 0.99915 1.02265 0.97491 1.70138 1.24260 1.54544 1.10411 0.85162 0.79267 0.77398 0.78006 1.21226 1.21666 1.20095 1.21974 0.86329 0.95009 0.96289 0.91991 0.91020 0.90609 0.75600 0.87152 0.90033 0.90651 0.85378 0.83629 0.83352 0.84238 0.87874 0.89702 0.88358 0.89236 0.96223 0.97452 0.94305 0.95953 0.95606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 8.52 71.98 0.61 -3.44 16 2 C 0.17 5.64 0.82 4.99 0.00 5.64 16 3 N -0.70 -21.29 5.18 -416.66 -2.16 -23.45 16 4 C 0.53 16.55 6.42 87.66 0.56 17.12 16 5 O -0.57 -21.73 12.36 -3.05 -0.04 -21.77 16 6 C -0.11 -2.68 3.46 -10.64 -0.04 -2.71 16 7 C -0.07 -1.68 6.10 30.52 0.19 -1.49 16 8 C -0.11 -2.55 6.14 -19.59 -0.12 -2.67 16 9 C -0.12 -2.43 10.04 22.30 0.22 -2.20 16 10 C -0.12 -2.01 10.05 22.24 0.22 -1.79 16 11 C -0.13 -1.91 10.05 22.24 0.22 -1.69 16 12 C -0.11 -1.94 10.04 22.30 0.22 -1.72 16 13 C -0.11 -2.29 6.14 -19.60 -0.12 -2.41 16 14 C -0.06 -1.19 6.31 30.51 0.19 -1.00 16 15 C -0.13 -4.26 5.97 31.78 0.19 -4.07 16 16 C 0.19 8.75 5.36 86.73 0.47 9.22 16 17 N -0.62 -32.30 3.39 -691.98 -2.35 -34.64 16 18 C -0.24 -13.99 10.28 84.03 0.86 -13.12 16 19 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 20 C -0.06 -3.35 5.49 84.86 0.47 -2.88 16 21 N -0.94 -55.90 10.31 21.65 0.22 -55.68 16 22 Si 0.97 46.47 29.55 68.60 2.03 48.50 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 26 C 0.13 5.77 6.17 86.85 0.54 6.31 16 27 H 0.06 2.02 6.01 -2.39 -0.01 2.00 16 28 H 0.07 1.90 8.13 -2.39 -0.02 1.88 16 29 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.41 10.91 8.51 -92.71 -0.79 10.12 16 31 H 0.11 2.69 8.14 -2.38 -0.02 2.68 16 32 H 0.08 2.38 6.98 -2.39 -0.02 2.36 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 36 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 38 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 1.68 7.88 -2.39 -0.02 1.66 16 40 H 0.10 2.63 8.09 -2.39 -0.02 2.61 16 41 H 0.09 2.71 8.04 -2.39 -0.02 2.69 16 42 H 0.02 1.01 7.38 -2.39 -0.02 1.00 16 43 H 0.01 0.39 7.51 -2.39 -0.02 0.37 16 44 H 0.25 14.25 8.31 -92.71 -0.77 13.47 16 45 H 0.02 1.01 8.03 -2.39 -0.02 0.99 16 46 H 0.03 1.25 6.87 -2.38 -0.02 1.23 16 Total: -1.00 -71.27 363.83 2.59 -68.69 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.19 Total: 21.27 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 4.70 Total: -2.91 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -4.28 Total: -113.78 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.04 Total: -21.77 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -71.27 2.59 -68.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046654098.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.433 kcal (2) G-P(sol) polarization free energy of solvation -71.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds