Wall clock time and date at job start Tue Mar 31 2020 11:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 110.88653 * 2 1 4 4 C 1.34775 * 120.00088 * 59.30047 * 3 2 1 5 5 O 1.21281 * 119.99735 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99854 * 180.02562 * 4 3 2 7 7 H 1.08996 * 115.55690 * 34.41262 * 6 4 3 8 8 C 1.53006 * 117.49813 * 248.74202 * 6 4 3 9 9 C 1.53001 * 117.49886 * 180.08439 * 6 4 3 10 10 H 1.09006 * 117.49890 * 359.97438 * 9 6 4 11 11 C 1.50697 * 117.50206 * 214.97755 * 9 6 4 12 12 C 1.38232 * 119.99916 * 299.72686 * 11 9 6 13 13 C 1.38235 * 119.99791 * 179.78765 * 12 11 9 14 14 C 1.38234 * 120.00251 * 0.46501 * 13 12 11 15 15 C 1.38239 * 119.99677 * 359.76711 * 14 13 12 16 16 C 1.38230 * 120.00081 * 119.99962 * 11 9 6 17 17 C 1.55165 * 111.00426 * 236.07708 * 2 1 3 18 18 C 1.54320 * 102.94006 * 206.42285 * 17 2 1 19 19 N 1.47023 * 107.27576 * 22.19194 * 18 17 2 20 20 C 1.36933 * 125.64851 * 181.02277 * 19 18 17 21 21 H 1.08000 * 119.99877 * 180.02562 * 20 19 18 22 22 C 1.38811 * 120.00137 * 0.04163 * 20 19 18 23 23 N 1.31612 * 120.00209 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99839 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47285 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47452 * 120.00239 * 24 22 20 27 27 H 1.48505 * 109.47099 * 240.00273 * 24 22 20 28 28 C 1.47424 * 108.70235 * 1.05739 * 19 18 17 29 29 H 1.09002 * 109.47153 * 297.57234 * 1 2 3 30 30 H 1.09001 * 109.46832 * 177.57425 * 1 2 3 31 31 H 1.09004 * 109.47261 * 57.57406 * 1 2 3 32 32 H 0.97008 * 119.99808 * 239.30462 * 3 2 1 33 33 H 1.09006 * 117.49425 * 0.02562 * 8 6 4 34 34 H 1.08996 * 117.50064 * 145.01945 * 8 6 4 35 35 H 1.07998 * 119.99967 * 359.97438 * 12 11 9 36 36 H 1.08008 * 119.99923 * 180.24994 * 13 12 11 37 37 H 1.07995 * 120.00173 * 179.79289 * 14 13 12 38 38 H 1.08000 * 119.99902 * 180.02562 * 15 14 13 39 39 H 1.08011 * 120.00238 * 359.97438 * 16 11 9 40 40 H 1.08990 * 110.71702 * 324.78417 * 17 2 1 41 41 H 1.09003 * 110.71788 * 88.06328 * 17 2 1 42 42 H 1.09006 * 109.88205 * 262.77151 * 18 17 2 43 43 H 1.09004 * 109.88414 * 141.61192 * 18 17 2 44 44 H 0.97000 * 120.00659 * 179.97438 * 23 22 20 45 45 H 1.08992 * 110.37079 * 217.03221 * 28 19 18 46 46 H 1.09005 * 110.45662 * 94.75392 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7358 2.2108 1.0036 5 8 1.0182 1.8355 1.9065 6 6 2.2726 3.6189 1.0033 7 1 2.3803 4.0808 0.0219 8 6 3.3061 3.9812 2.0718 9 6 1.8788 4.5254 2.1712 10 1 1.2311 4.1034 2.9397 11 6 1.6700 5.9885 1.8769 12 6 2.7079 6.7460 1.3673 13 6 2.5151 8.0871 1.0931 14 6 1.2871 8.6730 1.3376 15 6 0.2506 7.9165 1.8517 16 6 0.4422 6.5744 2.1217 17 6 2.0861 -0.8084 -1.2020 18 6 3.4674 -1.2744 -0.6956 19 7 3.4272 -1.2427 0.7738 20 6 4.4641 -1.5660 1.6076 21 1 4.3334 -1.5108 2.6783 22 6 5.6833 -1.9644 1.0769 23 7 5.8429 -2.0310 -0.2278 24 14 7.0979 -2.4048 2.2146 25 1 6.6653 -2.2474 3.6264 26 1 7.5059 -3.8124 1.9753 27 1 8.2476 -1.5038 1.9464 28 6 2.0853 -0.8061 1.2006 29 1 -0.3633 0.4757 0.9110 30 1 -0.3633 -1.0268 -0.0435 31 1 -0.3634 0.5511 -0.8675 32 1 2.6259 1.6690 -0.7224 33 1 3.5980 3.2009 2.7747 34 1 4.0935 4.6817 1.7934 35 1 3.6686 6.2893 1.1805 36 1 3.3249 8.6780 0.6912 37 1 1.1375 9.7215 1.1266 38 1 -0.7090 8.3741 2.0423 39 1 -0.3677 5.9835 2.5236 40 1 1.4468 -1.6637 -1.4203 41 1 2.1922 -0.1707 -2.0796 42 1 4.2426 -0.6001 -1.0598 43 1 3.6651 -2.2898 -1.0392 44 1 6.6949 -2.3090 -0.5987 45 1 2.1560 -0.1712 2.0837 46 1 1.4509 -1.6688 1.4043 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046786976.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:43 Heat of formation + Delta-G solvation = 40.305733 kcal Electronic energy + Delta-G solvation = -26045.022334 eV Core-core repulsion = 22514.880543 eV Total energy + Delta-G solvation = -3530.141792 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.28801 -39.35561 -37.64545 -36.00523 -33.88151 -31.88272 -31.12657 -30.71040 -29.91274 -28.66114 -25.67820 -24.70410 -23.89421 -23.41248 -22.51908 -20.77543 -20.29429 -19.76308 -18.98870 -17.54961 -17.08673 -16.53734 -15.57992 -15.25364 -15.08387 -14.72265 -14.62690 -14.24315 -14.13862 -13.64386 -13.52977 -13.21325 -13.04832 -12.80597 -12.49650 -12.10453 -11.92631 -11.88810 -11.79272 -11.65175 -11.42674 -11.14480 -10.89830 -10.87283 -10.74566 -10.44249 -10.35171 -10.32146 -10.03748 -9.96049 -9.64728 -9.26107 -9.09429 -8.69786 -8.62975 -8.49173 -6.78173 -5.69436 -3.01128 1.12651 1.22715 2.82755 3.36575 3.40541 3.46827 3.48991 3.63565 4.06325 4.48819 4.52175 4.67485 4.77561 4.82442 4.90019 4.94244 5.05524 5.16283 5.25339 5.32448 5.41481 5.44027 5.50382 5.63936 5.68669 5.75121 5.81178 5.87949 5.99237 6.03511 6.05739 6.16714 6.19056 6.31807 6.33435 6.38472 6.42215 6.50767 6.56579 6.70851 6.82161 6.83743 7.17261 7.56496 7.58415 7.81820 7.97014 8.27685 8.64550 9.25183 9.85335 10.51625 11.42679 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.003275 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.980614 B = 8546.311260 C = 9591.698292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.157 3.843 3 N -0.696 5.696 4 C 0.547 3.453 5 O -0.542 6.542 6 C -0.173 4.173 7 H 0.120 0.880 8 C -0.141 4.141 9 C -0.089 4.089 10 H 0.127 0.873 11 C -0.047 4.047 12 C -0.120 4.120 13 C -0.118 4.118 14 C -0.128 4.128 15 C -0.119 4.119 16 C -0.111 4.111 17 C -0.147 4.147 18 C 0.178 3.822 19 N -0.603 5.603 20 C -0.220 4.220 21 H 0.076 0.924 22 C -0.010 4.010 23 N -0.924 5.924 24 Si 0.909 3.091 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.133 3.867 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.398 0.602 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.045 0.955 43 H 0.043 0.957 44 H 0.250 0.750 45 H 0.052 0.948 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.584 18.095 -1.165 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.070 3.930 3 N -0.345 5.345 4 C 0.333 3.667 5 O -0.420 6.420 6 C -0.194 4.194 7 H 0.138 0.862 8 C -0.178 4.178 9 C -0.108 4.108 10 H 0.144 0.856 11 C -0.047 4.047 12 C -0.138 4.138 13 C -0.136 4.136 14 C -0.146 4.146 15 C -0.137 4.137 16 C -0.129 4.129 17 C -0.186 4.186 18 C 0.053 3.947 19 N -0.329 5.329 20 C -0.348 4.348 21 H 0.094 0.906 22 C -0.206 4.206 23 N -0.573 5.573 24 Si 0.740 3.260 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.219 1.219 28 C 0.006 3.994 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.232 0.768 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -9.873 17.715 -0.538 20.288 hybrid contribution 1.191 -0.148 0.005 1.200 sum -8.683 17.567 -0.533 19.603 Atomic orbital electron populations 1.22002 0.94380 1.01914 1.02520 1.21483 0.92548 0.80856 0.98114 1.45721 1.51202 1.12094 1.25519 1.19394 0.80158 0.85474 0.81708 1.90631 1.37888 1.77467 1.36049 1.22336 1.06223 0.94365 0.96485 0.86173 1.23136 0.91667 1.02939 1.00106 1.21091 0.99644 0.90004 1.00021 0.85557 1.19194 0.93803 0.93446 0.98266 1.21130 0.99003 0.94140 0.99558 1.21130 0.97393 0.94990 1.00121 1.21144 0.93559 0.99811 1.00094 1.21137 0.99026 0.94107 0.99457 1.21032 0.96767 0.94965 1.00100 1.23232 1.00510 0.98885 0.95942 1.21147 0.89977 0.99865 0.83711 1.44443 1.07788 1.78858 1.01800 1.19099 0.89341 1.37374 0.88994 0.90594 1.24757 0.97742 1.02103 0.96000 1.69954 1.23991 1.54159 1.09154 0.86067 0.82461 0.77719 0.79708 1.20558 1.21821 1.21853 1.21863 0.87561 0.94845 0.95139 0.90783 0.91970 0.93228 0.76754 0.87359 0.87619 0.85721 0.86097 0.86278 0.86095 0.85836 0.90923 0.91789 0.93652 0.93885 0.93947 0.92999 0.95809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.53 37.16 0.32 -2.02 16 2 C 0.16 2.80 0.82 -129.66 -0.11 2.69 16 3 N -0.70 -11.45 5.18 -45.62 -0.24 -11.68 16 4 C 0.55 9.05 6.99 -10.99 -0.08 8.98 16 5 O -0.54 -10.49 13.10 5.56 0.07 -10.41 16 6 C -0.17 -2.26 5.82 -91.77 -0.53 -2.80 16 7 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 8 C -0.14 -1.75 9.57 -26.69 -0.26 -2.00 16 9 C -0.09 -1.10 5.56 -91.73 -0.51 -1.61 16 10 H 0.13 1.71 7.67 -51.93 -0.40 1.31 16 11 C -0.05 -0.52 5.61 -104.63 -0.59 -1.11 16 12 C -0.12 -1.21 9.30 -39.58 -0.37 -1.58 16 13 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16 14 C -0.13 -1.11 10.05 -39.58 -0.40 -1.50 16 15 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 16 C -0.11 -1.15 9.74 -39.59 -0.39 -1.53 16 17 C -0.15 -2.63 5.98 -24.89 -0.15 -2.77 16 18 C 0.18 4.20 5.36 -3.07 -0.02 4.18 16 19 N -0.60 -15.46 3.39 -170.07 -0.58 -16.03 16 20 C -0.22 -6.21 10.28 -15.06 -0.15 -6.36 16 21 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 22 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 23 N -0.92 -26.93 10.31 55.49 0.57 -26.36 16 24 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 28 C 0.13 2.94 6.13 -2.53 -0.02 2.92 16 29 H 0.07 1.26 6.31 -51.93 -0.33 0.93 16 30 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.40 5.87 8.50 -40.82 -0.35 5.52 16 33 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.11 1.08 6.17 -51.93 -0.32 0.76 16 35 H 0.12 1.11 6.02 -52.49 -0.32 0.80 16 36 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 39 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 40 H 0.07 1.22 8.01 -51.93 -0.42 0.80 16 41 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 42 H 0.05 1.17 7.38 -51.93 -0.38 0.78 16 43 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 44 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.05 1.24 6.59 -51.93 -0.34 0.89 16 46 H 0.02 0.53 8.03 -51.93 -0.42 0.12 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -32.18 369.35 -10.76 -42.94 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.00 Total: 6.51 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -4.13 Total: -7.85 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.24 Total: -54.07 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.07 Total: -10.41 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.18 -10.76 -42.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046786976.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.247 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds