Wall clock time and date at job start Tue Mar 31 2020 11:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 110.88653 * 2 1 4 4 C 1.34775 * 120.00088 * 59.30047 * 3 2 1 5 5 O 1.21281 * 119.99735 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99854 * 180.02562 * 4 3 2 7 7 H 1.08996 * 115.55690 * 34.41262 * 6 4 3 8 8 C 1.53006 * 117.49813 * 248.74202 * 6 4 3 9 9 C 1.53001 * 117.49886 * 180.08439 * 6 4 3 10 10 H 1.09006 * 117.49890 * 359.97438 * 9 6 4 11 11 C 1.50697 * 117.50206 * 214.97755 * 9 6 4 12 12 C 1.38232 * 119.99916 * 299.72686 * 11 9 6 13 13 C 1.38235 * 119.99791 * 179.78765 * 12 11 9 14 14 C 1.38234 * 120.00251 * 0.46501 * 13 12 11 15 15 C 1.38239 * 119.99677 * 359.76711 * 14 13 12 16 16 C 1.38230 * 120.00081 * 119.99962 * 11 9 6 17 17 C 1.55165 * 111.00426 * 236.07708 * 2 1 3 18 18 C 1.54320 * 102.94006 * 206.42285 * 17 2 1 19 19 N 1.47023 * 107.27576 * 22.19194 * 18 17 2 20 20 C 1.36933 * 125.64851 * 181.02277 * 19 18 17 21 21 H 1.08000 * 119.99877 * 180.02562 * 20 19 18 22 22 C 1.38811 * 120.00137 * 0.04163 * 20 19 18 23 23 N 1.31612 * 120.00209 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99839 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47285 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47452 * 120.00239 * 24 22 20 27 27 H 1.48505 * 109.47099 * 240.00273 * 24 22 20 28 28 C 1.47424 * 108.70235 * 1.05739 * 19 18 17 29 29 H 1.09002 * 109.47153 * 297.57234 * 1 2 3 30 30 H 1.09001 * 109.46832 * 177.57425 * 1 2 3 31 31 H 1.09004 * 109.47261 * 57.57406 * 1 2 3 32 32 H 0.97008 * 119.99808 * 239.30462 * 3 2 1 33 33 H 1.09006 * 117.49425 * 0.02562 * 8 6 4 34 34 H 1.08996 * 117.50064 * 145.01945 * 8 6 4 35 35 H 1.07998 * 119.99967 * 359.97438 * 12 11 9 36 36 H 1.08008 * 119.99923 * 180.24994 * 13 12 11 37 37 H 1.07995 * 120.00173 * 179.79289 * 14 13 12 38 38 H 1.08000 * 119.99902 * 180.02562 * 15 14 13 39 39 H 1.08011 * 120.00238 * 359.97438 * 16 11 9 40 40 H 1.08990 * 110.71702 * 324.78417 * 17 2 1 41 41 H 1.09003 * 110.71788 * 88.06328 * 17 2 1 42 42 H 1.09006 * 109.88205 * 262.77151 * 18 17 2 43 43 H 1.09004 * 109.88414 * 141.61192 * 18 17 2 44 44 H 0.97000 * 120.00659 * 179.97438 * 23 22 20 45 45 H 1.08992 * 110.37079 * 217.03221 * 28 19 18 46 46 H 1.09005 * 110.45662 * 94.75392 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7358 2.2108 1.0036 5 8 1.0182 1.8355 1.9065 6 6 2.2726 3.6189 1.0033 7 1 2.3803 4.0808 0.0219 8 6 3.3061 3.9812 2.0718 9 6 1.8788 4.5254 2.1712 10 1 1.2311 4.1034 2.9397 11 6 1.6700 5.9885 1.8769 12 6 2.7079 6.7460 1.3673 13 6 2.5151 8.0871 1.0931 14 6 1.2871 8.6730 1.3376 15 6 0.2506 7.9165 1.8517 16 6 0.4422 6.5744 2.1217 17 6 2.0861 -0.8084 -1.2020 18 6 3.4674 -1.2744 -0.6956 19 7 3.4272 -1.2427 0.7738 20 6 4.4641 -1.5660 1.6076 21 1 4.3334 -1.5108 2.6783 22 6 5.6833 -1.9644 1.0769 23 7 5.8429 -2.0310 -0.2278 24 14 7.0979 -2.4048 2.2146 25 1 6.6653 -2.2474 3.6264 26 1 7.5059 -3.8124 1.9753 27 1 8.2476 -1.5038 1.9464 28 6 2.0853 -0.8061 1.2006 29 1 -0.3633 0.4757 0.9110 30 1 -0.3633 -1.0268 -0.0435 31 1 -0.3634 0.5511 -0.8675 32 1 2.6259 1.6690 -0.7224 33 1 3.5980 3.2009 2.7747 34 1 4.0935 4.6817 1.7934 35 1 3.6686 6.2893 1.1805 36 1 3.3249 8.6780 0.6912 37 1 1.1375 9.7215 1.1266 38 1 -0.7090 8.3741 2.0423 39 1 -0.3677 5.9835 2.5236 40 1 1.4468 -1.6637 -1.4203 41 1 2.1922 -0.1707 -2.0796 42 1 4.2426 -0.6001 -1.0598 43 1 3.6651 -2.2898 -1.0392 44 1 6.6949 -2.3090 -0.5987 45 1 2.1560 -0.1712 2.0837 46 1 1.4509 -1.6688 1.4043 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046786976.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:43 Heat of formation + Delta-G solvation = 22.153045 kcal Electronic energy + Delta-G solvation = -26045.809494 eV Core-core repulsion = 22514.880543 eV Total energy + Delta-G solvation = -3530.928951 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.49719 -40.36357 -39.04144 -37.16400 -35.63330 -33.63428 -31.91369 -31.76922 -31.27474 -30.34488 -27.53257 -25.98870 -25.12051 -24.69611 -23.26343 -22.28275 -21.63291 -20.94020 -20.44184 -18.99077 -18.45647 -17.71459 -17.09894 -16.67049 -16.15099 -16.02241 -15.95553 -15.58698 -15.40093 -15.17265 -14.68185 -14.23715 -14.22202 -13.90603 -13.80100 -13.57672 -13.53040 -13.38981 -13.12915 -12.86916 -12.84740 -12.75462 -12.21325 -12.11796 -12.02752 -11.96336 -11.93486 -11.70656 -11.65157 -11.54333 -11.37430 -10.72620 -10.62177 -9.97399 -9.79769 -9.48445 -8.87146 -7.86454 -5.20184 0.38725 0.52615 1.43340 1.43794 1.54314 1.57305 2.18689 2.47443 2.72348 3.12472 3.31711 3.50612 3.58911 3.70045 3.75680 3.85981 3.99807 4.04109 4.12498 4.18423 4.19416 4.26948 4.32634 4.62026 4.63397 4.68352 4.71348 4.75779 4.83283 4.85779 4.91229 4.93868 5.01883 5.05745 5.08423 5.15934 5.20396 5.35338 5.41960 5.61284 5.64481 5.65390 5.70246 5.74063 5.78060 6.13708 6.19216 6.66861 7.11086 7.34225 7.76550 8.41125 9.23536 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.003275 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.980614 B = 8546.311260 C = 9591.698292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.166 3.834 3 N -0.695 5.695 4 C 0.540 3.460 5 O -0.575 6.575 6 C -0.174 4.174 7 H 0.145 0.855 8 C -0.140 4.140 9 C -0.079 4.079 10 H 0.106 0.894 11 C -0.063 4.063 12 C -0.128 4.128 13 C -0.123 4.123 14 C -0.129 4.129 15 C -0.124 4.124 16 C -0.127 4.127 17 C -0.129 4.129 18 C 0.186 3.814 19 N -0.620 5.620 20 C -0.240 4.240 21 H 0.067 0.933 22 C -0.059 4.059 23 N -0.945 5.945 24 Si 0.973 3.027 25 H -0.274 1.274 26 H -0.290 1.290 27 H -0.288 1.288 28 C 0.130 3.870 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.408 0.592 33 H 0.084 0.916 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.123 0.877 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.019 0.981 43 H 0.008 0.992 44 H 0.248 0.752 45 H 0.027 0.973 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.989 20.221 -2.238 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.079 3.921 3 N -0.345 5.345 4 C 0.328 3.672 5 O -0.455 6.455 6 C -0.195 4.195 7 H 0.163 0.837 8 C -0.177 4.177 9 C -0.097 4.097 10 H 0.124 0.876 11 C -0.063 4.063 12 C -0.146 4.146 13 C -0.141 4.141 14 C -0.146 4.146 15 C -0.142 4.142 16 C -0.145 4.145 17 C -0.167 4.167 18 C 0.061 3.939 19 N -0.346 5.346 20 C -0.369 4.369 21 H 0.085 0.915 22 C -0.252 4.252 23 N -0.594 5.594 24 Si 0.802 3.198 25 H -0.199 1.199 26 H -0.217 1.217 27 H -0.215 1.215 28 C 0.004 3.996 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.244 0.756 33 H 0.102 0.898 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.141 0.859 40 H 0.109 0.891 41 H 0.116 0.884 42 H 0.037 0.963 43 H 0.026 0.974 44 H 0.057 0.943 45 H 0.046 0.954 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -10.294 19.857 -1.621 22.425 hybrid contribution 1.298 -0.793 0.400 1.573 sum -8.996 19.064 -1.221 21.116 Atomic orbital electron populations 1.21919 0.92058 1.03011 1.02837 1.21349 0.94041 0.81077 0.95611 1.45728 1.51302 1.11476 1.25960 1.19987 0.79528 0.86695 0.80973 1.90616 1.39376 1.78384 1.37165 1.22341 1.06624 0.92492 0.98008 0.83716 1.23166 0.92541 1.02748 0.99282 1.20959 0.98926 0.90926 0.98920 0.87557 1.19150 0.94735 0.92559 0.99882 1.21290 0.99023 0.94766 0.99528 1.21451 0.98300 0.94708 0.99604 1.21513 0.93155 1.01035 0.98946 1.21419 1.00241 0.93546 0.98960 1.21183 0.96690 0.95909 1.00681 1.23107 0.96891 0.99988 0.96718 1.20939 0.92885 0.97400 0.82679 1.44680 1.08462 1.78806 1.02636 1.19331 0.90649 1.37711 0.89230 0.91472 1.25512 0.99914 1.02276 0.97505 1.70146 1.24227 1.54580 1.10439 0.85087 0.79305 0.77178 0.78226 1.19853 1.21689 1.21451 1.21962 0.86357 0.94975 0.96349 0.92448 0.90723 0.90661 0.75610 0.89757 0.85073 0.84841 0.83909 0.83797 0.84108 0.85942 0.89119 0.88430 0.96296 0.97383 0.94303 0.95441 0.95968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 8.53 71.98 0.61 -3.49 16 2 C 0.17 5.78 0.82 5.00 0.00 5.79 16 3 N -0.69 -22.29 5.18 -416.64 -2.16 -24.45 16 4 C 0.54 17.93 6.99 87.66 0.61 18.54 16 5 O -0.58 -22.84 13.10 -3.03 -0.04 -22.88 16 6 C -0.17 -4.44 5.82 -11.54 -0.07 -4.51 16 7 H 0.15 2.96 8.14 -2.39 -0.02 2.94 16 8 C -0.14 -3.46 9.57 30.62 0.29 -3.16 16 9 C -0.08 -1.94 5.56 -11.52 -0.06 -2.01 16 10 H 0.11 3.03 7.67 -2.38 -0.02 3.01 16 11 C -0.06 -1.35 5.61 -19.87 -0.11 -1.46 16 12 C -0.13 -2.33 9.30 22.27 0.21 -2.13 16 13 C -0.12 -1.87 10.05 22.27 0.22 -1.65 16 14 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 15 C -0.12 -1.99 10.05 22.27 0.22 -1.76 16 16 C -0.13 -2.52 9.74 22.27 0.22 -2.31 16 17 C -0.13 -4.37 5.98 31.78 0.19 -4.18 16 18 C 0.19 8.90 5.36 86.73 0.47 9.36 16 19 N -0.62 -32.61 3.39 -691.99 -2.35 -34.96 16 20 C -0.24 -13.97 10.28 84.03 0.86 -13.11 16 21 H 0.07 3.91 7.83 -2.91 -0.02 3.88 16 22 C -0.06 -3.38 5.49 84.86 0.47 -2.92 16 23 N -0.94 -56.20 10.31 21.65 0.22 -55.98 16 24 Si 0.97 46.62 29.55 68.60 2.03 48.65 16 25 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 28 C 0.13 5.86 6.13 86.86 0.53 6.39 16 29 H 0.06 1.91 6.31 -2.39 -0.02 1.89 16 30 H 0.07 2.00 8.11 -2.39 -0.02 1.98 16 31 H 0.07 1.84 8.14 -2.38 -0.02 1.83 16 32 H 0.41 11.43 8.50 -92.70 -0.79 10.64 16 33 H 0.08 2.48 8.14 -2.38 -0.02 2.47 16 34 H 0.13 2.51 6.17 -2.39 -0.01 2.49 16 35 H 0.13 2.08 6.02 -2.91 -0.02 2.07 16 36 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 39 H 0.12 2.34 8.06 -2.91 -0.02 2.32 16 40 H 0.09 2.80 8.01 -2.39 -0.02 2.78 16 41 H 0.10 2.70 8.07 -2.39 -0.02 2.68 16 42 H 0.02 0.99 7.38 -2.38 -0.02 0.97 16 43 H 0.01 0.43 7.51 -2.38 -0.02 0.41 16 44 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 45 H 0.03 1.36 6.59 -2.39 -0.02 1.34 16 46 H 0.02 1.01 8.03 -2.38 -0.02 0.99 16 Total: -1.00 -71.97 369.35 2.79 -69.18 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.19 Total: 24.67 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 4.89 Total: -4.22 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -4.28 Total: -115.39 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.04 Total: -22.88 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -71.97 2.79 -69.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046786976.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.329 kcal (2) G-P(sol) polarization free energy of solvation -71.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds