Wall clock time and date at job start Tue Mar 31 2020 11:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 110.78061 * 2 1 4 4 C 1.34777 * 120.00030 * 303.23840 * 3 2 1 5 5 O 1.21555 * 120.00010 * 0.02562 * 4 3 2 6 6 C 1.47851 * 120.00337 * 180.02562 * 4 3 2 7 7 C 1.39577 * 120.13733 * 359.72214 * 6 4 3 8 8 C 1.37967 * 119.84765 * 179.79084 * 7 6 4 9 9 C 1.38354 * 120.14433 * 0.48396 * 8 7 6 10 10 C 1.50696 * 119.85602 * 179.76380 * 9 8 7 11 11 C 1.53007 * 117.49593 * 8.60354 * 10 9 8 12 12 C 1.52995 * 60.00257 * 252.50953 * 11 10 9 13 13 C 1.38364 * 120.29262 * 359.75102 * 9 8 7 14 14 C 1.37950 * 120.14334 * 0.02562 * 13 9 8 15 15 C 1.55151 * 110.71741 * 123.23736 * 2 1 3 16 16 C 1.54914 * 101.58023 * 153.86287 * 15 2 1 17 17 N 1.47420 * 104.83159 * 322.99181 * 16 15 2 18 18 C 1.36945 * 125.64792 * 204.08975 * 17 16 15 19 19 H 1.07997 * 119.99756 * 180.02562 * 18 17 16 20 20 C 1.38805 * 119.99878 * 0.02562 * 18 17 16 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.47020 * 108.70626 * 24.35323 * 17 16 15 27 27 H 1.08995 * 109.47166 * 296.76593 * 1 2 3 28 28 H 1.09000 * 109.47069 * 56.76058 * 1 2 3 29 29 H 1.08991 * 109.47197 * 176.76236 * 1 2 3 30 30 H 0.97000 * 120.00525 * 123.23771 * 3 2 1 31 31 H 1.07996 * 120.07722 * 0.02562 * 7 6 4 32 32 H 1.08001 * 119.92467 * 180.23389 * 8 7 6 33 33 H 1.08996 * 115.55521 * 154.31267 * 10 9 8 34 34 H 1.09001 * 117.49967 * 0.02562 * 11 10 9 35 35 H 1.09003 * 117.49771 * 145.01576 * 11 10 9 36 36 H 1.08998 * 117.49896 * 252.51081 * 12 11 10 37 37 H 1.08997 * 117.50189 * 107.48796 * 12 11 10 38 38 H 1.07997 * 119.92338 * 179.97438 * 13 9 8 39 39 H 1.08008 * 120.06989 * 180.02562 * 14 13 9 40 40 H 1.09002 * 111.00697 * 35.79181 * 15 2 1 41 41 H 1.08994 * 111.00548 * 271.93648 * 15 2 1 42 42 H 1.08999 * 110.37083 * 204.15142 * 16 15 2 43 43 H 1.08999 * 110.36305 * 81.82793 * 16 15 2 44 44 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.88406 * 118.12749 * 26 17 16 46 46 H 1.09001 * 109.88743 * 239.29401 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0498 1.3697 0.0000 4 6 1.6908 2.2267 -0.9762 5 8 0.9353 1.8633 -1.8565 6 6 2.2157 3.6089 -0.9766 7 6 3.0788 4.0310 0.0359 8 6 3.5685 5.3207 0.0273 9 6 3.1980 6.1980 -0.9764 10 6 3.7326 7.6069 -0.9765 11 6 4.8297 7.9462 0.0347 12 6 3.4116 8.4844 0.2351 13 6 2.3389 5.7873 -1.9803 14 6 1.8457 4.4990 -1.9859 15 6 2.0789 -0.7954 1.2138 16 6 3.4633 -1.2498 0.6875 17 7 3.2445 -1.5508 -0.7390 18 6 4.0043 -2.3970 -1.5018 19 1 3.7611 -2.5508 -2.5427 20 6 5.0869 -3.0571 -0.9371 21 7 5.3829 -2.8701 0.3317 22 14 6.1229 -4.2120 -1.9774 23 1 5.5626 -5.5851 -1.8999 24 1 6.1111 -3.7515 -3.3892 25 1 7.5186 -4.2176 -1.4701 26 6 2.0793 -0.7870 -1.2087 27 1 -0.3633 0.4628 0.9175 28 1 -0.3633 0.5633 -0.8595 29 1 -0.3633 -1.0259 -0.0580 30 1 2.6524 1.6598 0.7026 31 1 3.3656 3.3484 0.8221 32 1 4.2394 5.6475 0.8080 33 1 3.7787 8.0923 -1.9513 34 1 5.1650 7.1503 0.6996 35 1 5.5979 8.6548 -0.2751 36 1 3.2468 9.5471 0.0573 37 1 2.8136 8.0427 1.0322 38 1 2.0533 6.4771 -2.7606 39 1 1.1755 4.1795 -2.7704 40 1 1.4451 -1.6535 1.4375 41 1 2.1850 -0.1518 2.0870 42 1 3.7960 -2.1427 1.2169 43 1 4.1931 -0.4479 0.7984 44 1 6.1393 -3.3317 0.7264 45 1 2.3814 -0.0970 -1.9965 46 1 1.3155 -1.4687 -1.5830 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046848257.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:23 Heat of formation + Delta-G solvation = 44.666040 kcal Electronic energy + Delta-G solvation = -25956.626065 eV Core-core repulsion = 22426.673350 eV Total energy + Delta-G solvation = -3529.952715 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.39461 -39.30373 -37.46418 -36.51823 -34.03427 -32.27763 -30.99591 -30.79987 -29.66398 -28.64415 -25.67654 -24.92827 -23.56340 -23.12870 -22.41606 -21.53515 -20.36095 -20.10652 -18.96545 -18.00111 -16.81813 -16.61167 -15.64385 -15.30864 -15.04922 -14.71981 -14.67187 -14.53496 -13.97296 -13.69067 -13.56351 -13.22508 -12.99198 -12.75877 -12.70036 -12.23947 -11.97307 -11.87342 -11.70945 -11.59685 -11.54706 -11.24045 -10.94891 -10.90780 -10.83631 -10.66207 -10.39752 -10.31963 -10.07572 -9.94560 -9.64676 -9.27613 -9.10270 -8.78095 -8.63856 -8.54110 -6.79334 -5.63455 -3.03711 0.77408 1.26674 2.91004 3.41374 3.42761 3.47144 3.49372 3.56483 3.94516 4.22129 4.50609 4.51846 4.59671 4.70406 4.77890 4.83512 5.02746 5.18674 5.24714 5.29836 5.39362 5.41607 5.47306 5.51844 5.59413 5.67703 5.73975 5.75337 5.78201 5.88645 6.05861 6.18710 6.20898 6.24393 6.30967 6.38361 6.38956 6.47829 6.54674 6.73261 6.76095 6.85114 7.16086 7.45913 7.65327 7.81335 7.88704 8.36956 8.52882 9.25106 9.85786 10.50643 11.40961 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015485 B = 0.003163 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.774959 B = 8851.001257 C = 9644.185967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.159 3.841 3 N -0.702 5.702 4 C 0.558 3.442 5 O -0.536 6.536 6 C -0.131 4.131 7 C -0.080 4.080 8 C -0.130 4.130 9 C -0.034 4.034 10 C -0.122 4.122 11 C -0.176 4.176 12 C -0.168 4.168 13 C -0.124 4.124 14 C -0.057 4.057 15 C -0.147 4.147 16 C 0.153 3.847 17 N -0.604 5.604 18 C -0.217 4.217 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.925 5.925 22 Si 0.914 3.086 23 H -0.289 1.289 24 H -0.282 1.282 25 H -0.291 1.291 26 C 0.137 3.863 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.396 0.604 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.127 0.873 39 H 0.137 0.863 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.108 0.892 43 H 0.009 0.991 44 H 0.251 0.749 45 H 0.031 0.969 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.561 20.850 3.061 21.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.074 3.926 3 N -0.353 5.353 4 C 0.345 3.655 5 O -0.414 6.414 6 C -0.134 4.134 7 C -0.099 4.099 8 C -0.147 4.147 9 C -0.034 4.034 10 C -0.140 4.140 11 C -0.213 4.213 12 C -0.205 4.205 13 C -0.142 4.142 14 C -0.076 4.076 15 C -0.186 4.186 16 C 0.028 3.972 17 N -0.330 5.330 18 C -0.345 4.345 19 H 0.095 0.905 20 C -0.208 4.208 21 N -0.574 5.574 22 Si 0.745 3.255 23 H -0.216 1.216 24 H -0.208 1.208 25 H -0.217 1.217 26 C 0.011 3.989 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.232 0.768 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.132 0.868 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.145 0.855 39 H 0.155 0.845 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.126 0.874 43 H 0.027 0.973 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.915 20.412 2.448 21.393 hybrid contribution 1.025 -0.388 -0.202 1.114 sum -4.890 20.024 2.246 20.735 Atomic orbital electron populations 1.22069 0.94085 1.02469 1.02419 1.21374 0.93136 0.80171 0.97954 1.45922 1.49150 1.12158 1.28043 1.18177 0.80910 0.84670 0.81762 1.90711 1.36176 1.78061 1.36479 1.20092 1.01034 0.94580 0.97667 1.21329 0.95217 0.96009 0.97345 1.20955 1.01092 0.93401 0.99302 1.19303 0.95824 0.93592 0.94661 1.21085 1.03833 0.93267 0.95791 1.23093 0.92041 1.03710 1.02456 1.23033 0.98875 0.99266 0.99334 1.20901 0.98275 0.96032 0.98966 1.21255 0.97263 0.92176 0.96927 1.23364 1.01301 0.98867 0.95065 1.21938 0.89329 1.00618 0.85334 1.44508 1.31005 1.50090 1.07379 1.19100 1.06042 1.16378 0.92979 0.90549 1.24758 0.98782 1.00793 0.96492 1.69776 1.30222 1.46507 1.10929 0.86066 0.79516 0.80743 0.79180 1.21610 1.20777 1.21704 1.21612 0.90344 0.93109 0.93876 0.93214 0.90459 0.91751 0.76847 0.85461 0.85469 0.86778 0.88127 0.88344 0.88410 0.88463 0.85491 0.84546 0.90439 0.91929 0.87388 0.97260 0.93834 0.95143 0.95126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.44 37.16 0.31 -2.16 16 2 C 0.16 2.92 0.81 -129.98 -0.11 2.82 16 3 N -0.70 -11.59 5.09 -46.84 -0.24 -11.83 16 4 C 0.56 9.51 6.98 -12.33 -0.09 9.43 16 5 O -0.54 -10.59 13.32 5.32 0.07 -10.52 16 6 C -0.13 -1.85 5.87 -104.97 -0.62 -2.47 16 7 C -0.08 -0.96 9.54 -39.18 -0.37 -1.33 16 8 C -0.13 -1.35 9.28 -39.64 -0.37 -1.72 16 9 C -0.03 -0.34 5.62 -104.53 -0.59 -0.93 16 10 C -0.12 -0.96 6.04 -91.77 -0.55 -1.52 16 11 C -0.18 -1.20 9.85 -26.73 -0.26 -1.47 16 12 C -0.17 -1.12 10.16 -26.73 -0.27 -1.39 16 13 C -0.12 -1.32 9.72 -39.64 -0.39 -1.71 16 14 C -0.06 -0.74 9.59 -39.19 -0.38 -1.12 16 15 C -0.15 -2.70 6.07 -24.58 -0.15 -2.85 16 16 C 0.15 3.64 5.87 -2.53 -0.01 3.63 16 17 N -0.60 -15.85 3.39 -170.07 -0.58 -16.43 16 18 C -0.22 -6.21 10.27 -15.06 -0.15 -6.36 16 19 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 20 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 21 N -0.93 -26.94 10.09 55.49 0.56 -26.38 16 22 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 C 0.14 3.13 6.19 -3.06 -0.02 3.11 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 1.36 5.97 -51.93 -0.31 1.05 16 29 H 0.06 1.01 8.07 -51.93 -0.42 0.59 16 30 H 0.40 5.68 6.52 -40.82 -0.27 5.41 16 31 H 0.13 1.33 6.41 -52.49 -0.34 1.00 16 32 H 0.13 1.07 6.00 -52.49 -0.31 0.75 16 33 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 0.68 6.16 -51.93 -0.32 0.36 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.14 1.77 7.65 -52.48 -0.40 1.36 16 40 H 0.08 1.40 8.05 -51.93 -0.42 0.98 16 41 H 0.06 0.97 8.07 -51.93 -0.42 0.55 16 42 H 0.11 2.90 5.87 -51.93 -0.30 2.60 16 43 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.03 0.76 6.90 -51.93 -0.36 0.40 16 46 H 0.03 0.71 7.77 -51.93 -0.40 0.31 16 LS Contribution 365.05 15.07 5.50 5.50 Total: -1.00 -32.52 365.05 -10.59 -43.11 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.78 Total: 5.60 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -4.11 Total: -6.52 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.26 Total: -54.63 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.07 Total: -10.52 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.52 -10.59 -43.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046848257.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.778 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds