Wall clock time and date at job start Tue Mar 31 2020 11:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 110.78061 * 2 1 4 4 C 1.34777 * 120.00030 * 303.23840 * 3 2 1 5 5 O 1.21555 * 120.00010 * 0.02562 * 4 3 2 6 6 C 1.47851 * 120.00337 * 180.02562 * 4 3 2 7 7 C 1.39577 * 120.13733 * 359.72214 * 6 4 3 8 8 C 1.37967 * 119.84765 * 179.79084 * 7 6 4 9 9 C 1.38354 * 120.14433 * 0.48396 * 8 7 6 10 10 C 1.50696 * 119.85602 * 179.76380 * 9 8 7 11 11 C 1.53007 * 117.49593 * 8.60354 * 10 9 8 12 12 C 1.52995 * 60.00257 * 252.50953 * 11 10 9 13 13 C 1.38364 * 120.29262 * 359.75102 * 9 8 7 14 14 C 1.37950 * 120.14334 * 0.02562 * 13 9 8 15 15 C 1.55151 * 110.71741 * 123.23736 * 2 1 3 16 16 C 1.54914 * 101.58023 * 153.86287 * 15 2 1 17 17 N 1.47420 * 104.83159 * 322.99181 * 16 15 2 18 18 C 1.36945 * 125.64792 * 204.08975 * 17 16 15 19 19 H 1.07997 * 119.99756 * 180.02562 * 18 17 16 20 20 C 1.38805 * 119.99878 * 0.02562 * 18 17 16 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.47020 * 108.70626 * 24.35323 * 17 16 15 27 27 H 1.08995 * 109.47166 * 296.76593 * 1 2 3 28 28 H 1.09000 * 109.47069 * 56.76058 * 1 2 3 29 29 H 1.08991 * 109.47197 * 176.76236 * 1 2 3 30 30 H 0.97000 * 120.00525 * 123.23771 * 3 2 1 31 31 H 1.07996 * 120.07722 * 0.02562 * 7 6 4 32 32 H 1.08001 * 119.92467 * 180.23389 * 8 7 6 33 33 H 1.08996 * 115.55521 * 154.31267 * 10 9 8 34 34 H 1.09001 * 117.49967 * 0.02562 * 11 10 9 35 35 H 1.09003 * 117.49771 * 145.01576 * 11 10 9 36 36 H 1.08998 * 117.49896 * 252.51081 * 12 11 10 37 37 H 1.08997 * 117.50189 * 107.48796 * 12 11 10 38 38 H 1.07997 * 119.92338 * 179.97438 * 13 9 8 39 39 H 1.08008 * 120.06989 * 180.02562 * 14 13 9 40 40 H 1.09002 * 111.00697 * 35.79181 * 15 2 1 41 41 H 1.08994 * 111.00548 * 271.93648 * 15 2 1 42 42 H 1.08999 * 110.37083 * 204.15142 * 16 15 2 43 43 H 1.08999 * 110.36305 * 81.82793 * 16 15 2 44 44 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.88406 * 118.12749 * 26 17 16 46 46 H 1.09001 * 109.88743 * 239.29401 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0498 1.3697 0.0000 4 6 1.6908 2.2267 -0.9762 5 8 0.9353 1.8633 -1.8565 6 6 2.2157 3.6089 -0.9766 7 6 3.0788 4.0310 0.0359 8 6 3.5685 5.3207 0.0273 9 6 3.1980 6.1980 -0.9764 10 6 3.7326 7.6069 -0.9765 11 6 4.8297 7.9462 0.0347 12 6 3.4116 8.4844 0.2351 13 6 2.3389 5.7873 -1.9803 14 6 1.8457 4.4990 -1.9859 15 6 2.0789 -0.7954 1.2138 16 6 3.4633 -1.2498 0.6875 17 7 3.2445 -1.5508 -0.7390 18 6 4.0043 -2.3970 -1.5018 19 1 3.7611 -2.5508 -2.5427 20 6 5.0869 -3.0571 -0.9371 21 7 5.3829 -2.8701 0.3317 22 14 6.1229 -4.2120 -1.9774 23 1 5.5626 -5.5851 -1.8999 24 1 6.1111 -3.7515 -3.3892 25 1 7.5186 -4.2176 -1.4701 26 6 2.0793 -0.7870 -1.2087 27 1 -0.3633 0.4628 0.9175 28 1 -0.3633 0.5633 -0.8595 29 1 -0.3633 -1.0259 -0.0580 30 1 2.6524 1.6598 0.7026 31 1 3.3656 3.3484 0.8221 32 1 4.2394 5.6475 0.8080 33 1 3.7787 8.0923 -1.9513 34 1 5.1650 7.1503 0.6996 35 1 5.5979 8.6548 -0.2751 36 1 3.2468 9.5471 0.0573 37 1 2.8136 8.0427 1.0322 38 1 2.0533 6.4771 -2.7606 39 1 1.1755 4.1795 -2.7704 40 1 1.4451 -1.6535 1.4375 41 1 2.1850 -0.1518 2.0870 42 1 3.7960 -2.1427 1.2169 43 1 4.1931 -0.4479 0.7984 44 1 6.1393 -3.3317 0.7264 45 1 2.3814 -0.0970 -1.9965 46 1 1.3155 -1.4687 -1.5830 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046848257.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:22 Heat of formation + Delta-G solvation = 26.247683 kcal Electronic energy + Delta-G solvation = -25957.424745 eV Core-core repulsion = 22426.673350 eV Total energy + Delta-G solvation = -3530.751395 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.60398 -40.35400 -38.88601 -37.38798 -35.77977 -33.86956 -32.36732 -31.78695 -31.08591 -30.32178 -27.57208 -26.00286 -25.23029 -23.89165 -23.02342 -22.67363 -22.16596 -21.07919 -20.42856 -19.30226 -18.67355 -17.49736 -17.07151 -16.73637 -16.12288 -16.08023 -16.02784 -15.57836 -15.55646 -14.92006 -14.82837 -14.40899 -14.31861 -14.07733 -13.82059 -13.72313 -13.51113 -13.32368 -13.12197 -12.83502 -12.79133 -12.49856 -12.27772 -12.09256 -12.06514 -12.02044 -11.98500 -11.72201 -11.59119 -11.56933 -11.23418 -10.76893 -10.70648 -10.10427 -9.98942 -9.54529 -8.90498 -7.80210 -5.23939 -0.19180 0.38348 1.44285 1.46010 1.54824 1.81217 2.14438 2.47255 2.73780 3.15662 3.28975 3.49133 3.59597 3.68980 3.80954 3.82958 3.95247 3.99606 4.02527 4.15367 4.15673 4.29907 4.39770 4.54563 4.61450 4.65003 4.76535 4.79258 4.82796 4.83797 4.88148 4.97215 4.99583 5.05634 5.07895 5.15669 5.27653 5.29878 5.35513 5.40226 5.41540 5.57089 5.58777 5.65883 5.78584 5.89346 6.29432 6.57468 7.09577 7.22913 7.75119 8.38873 9.21190 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015485 B = 0.003163 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.774959 B = 8851.001257 C = 9644.185967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.169 3.831 3 N -0.698 5.698 4 C 0.554 3.446 5 O -0.572 6.572 6 C -0.157 4.157 7 C -0.082 4.082 8 C -0.132 4.132 9 C -0.027 4.027 10 C -0.136 4.136 11 C -0.174 4.174 12 C -0.160 4.160 13 C -0.124 4.124 14 C -0.070 4.070 15 C -0.128 4.128 16 C 0.155 3.845 17 N -0.623 5.623 18 C -0.244 4.244 19 H 0.069 0.931 20 C -0.060 4.060 21 N -0.943 5.943 22 Si 0.979 3.021 23 H -0.282 1.282 24 H -0.278 1.278 25 H -0.288 1.288 26 C 0.137 3.863 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.407 0.593 31 H 0.140 0.860 32 H 0.151 0.849 33 H 0.125 0.875 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.150 0.850 39 H 0.126 0.874 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.078 0.922 43 H -0.007 1.007 44 H 0.249 0.751 45 H 0.003 0.997 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.273 22.844 4.194 23.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.083 3.917 3 N -0.350 5.350 4 C 0.343 3.657 5 O -0.453 6.453 6 C -0.160 4.160 7 C -0.100 4.100 8 C -0.149 4.149 9 C -0.028 4.028 10 C -0.154 4.154 11 C -0.211 4.211 12 C -0.197 4.197 13 C -0.142 4.142 14 C -0.089 4.089 15 C -0.166 4.166 16 C 0.031 3.969 17 N -0.349 5.349 18 C -0.373 4.373 19 H 0.087 0.913 20 C -0.253 4.253 21 N -0.592 5.592 22 Si 0.807 3.193 23 H -0.209 1.209 24 H -0.203 1.203 25 H -0.215 1.215 26 C 0.010 3.990 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.245 0.755 31 H 0.157 0.843 32 H 0.168 0.832 33 H 0.143 0.857 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.168 0.832 39 H 0.144 0.856 40 H 0.104 0.896 41 H 0.120 0.880 42 H 0.096 0.904 43 H 0.011 0.989 44 H 0.059 0.941 45 H 0.021 0.979 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -5.632 22.428 3.603 23.403 hybrid contribution 0.983 -0.919 -0.588 1.469 sum -4.649 21.509 3.015 22.211 Atomic orbital electron populations 1.21988 0.92056 1.02911 1.03171 1.21202 0.94437 0.80573 0.95500 1.45834 1.49348 1.11297 1.28478 1.18670 0.80226 0.85759 0.81017 1.90683 1.37875 1.78977 1.37743 1.19964 1.03192 0.93248 0.99632 1.21487 0.94587 0.97012 0.96933 1.21249 1.01000 0.92716 0.99956 1.19645 0.94571 0.94781 0.93754 1.21161 1.05107 0.92132 0.97030 1.23198 0.92342 1.03886 1.01647 1.23105 0.98627 0.99817 0.98126 1.21144 0.97954 0.95336 0.99790 1.21313 0.97723 0.93206 0.96678 1.23221 0.97607 0.99741 0.96050 1.21768 0.92229 0.98769 0.84165 1.44786 1.31549 1.50099 1.08438 1.19365 1.07140 1.17514 0.93262 0.91330 1.25553 0.99767 1.02206 0.97785 1.70006 1.30289 1.46946 1.11998 0.85076 0.77682 0.78755 0.77776 1.20899 1.20293 1.21450 1.21682 0.89238 0.92644 0.95390 0.90398 0.91993 0.91196 0.75528 0.84278 0.83185 0.85683 0.88101 0.87118 0.86900 0.88717 0.83207 0.85576 0.89609 0.88029 0.90404 0.98929 0.94107 0.97895 0.95884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 8.44 71.98 0.61 -3.88 16 2 C 0.17 6.14 0.81 4.80 0.00 6.15 16 3 N -0.70 -22.85 5.09 -420.37 -2.14 -24.99 16 4 C 0.55 19.28 6.98 86.79 0.61 19.89 16 5 O -0.57 -23.53 13.32 -3.89 -0.05 -23.58 16 6 C -0.16 -4.49 5.87 -20.09 -0.12 -4.61 16 7 C -0.08 -1.86 9.54 22.53 0.21 -1.65 16 8 C -0.13 -2.48 9.28 22.23 0.21 -2.27 16 9 C -0.03 -0.50 5.62 -19.81 -0.11 -0.61 16 10 C -0.14 -1.77 6.04 -11.54 -0.07 -1.84 16 11 C -0.17 -1.84 9.85 30.60 0.30 -1.54 16 12 C -0.16 -1.64 10.16 30.60 0.31 -1.32 16 13 C -0.12 -2.50 9.72 22.23 0.22 -2.29 16 14 C -0.07 -1.83 9.59 22.52 0.22 -1.62 16 15 C -0.13 -4.50 6.07 31.99 0.19 -4.30 16 16 C 0.16 7.50 5.87 86.86 0.51 8.01 16 17 N -0.62 -33.64 3.39 -691.97 -2.35 -35.99 16 18 C -0.24 -14.40 10.27 84.03 0.86 -13.53 16 19 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 20 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 21 N -0.94 -55.82 10.09 21.65 0.22 -55.60 16 22 Si 0.98 46.75 29.55 68.60 2.03 48.78 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 26 C 0.14 6.45 6.19 86.73 0.54 6.99 16 27 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.06 2.17 5.97 -2.39 -0.01 2.16 16 29 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 30 H 0.41 11.27 6.52 -92.71 -0.60 10.66 16 31 H 0.14 2.71 6.41 -2.91 -0.02 2.70 16 32 H 0.15 2.09 6.00 -2.91 -0.02 2.08 16 33 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.10 1.06 6.16 -2.39 -0.01 1.05 16 35 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 39 H 0.13 3.45 7.65 -2.91 -0.02 3.43 16 40 H 0.09 2.93 8.05 -2.39 -0.02 2.91 16 41 H 0.10 2.82 8.07 -2.39 -0.02 2.80 16 42 H 0.08 4.27 5.87 -2.39 -0.01 4.25 16 43 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 44 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 45 H 0.00 0.16 6.90 -2.39 -0.02 0.14 16 46 H 0.02 1.11 7.77 -2.39 -0.02 1.09 16 Total: -1.00 -72.73 365.05 3.05 -69.69 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.39 Total: 23.14 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 4.95 Total: -1.45 kcal Atomic # 7 Polarization: -112.31 SS G_CDS: -4.27 Total: -116.58 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.58 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -72.73 3.05 -69.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046848257.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.933 kcal (2) G-P(sol) polarization free energy of solvation -72.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds