Wall clock time and date at job start Tue Mar 31 2020 11:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46508 * 110.88456 * 2 1 4 4 C 1.34770 * 120.00075 * 62.42187 * 3 2 1 5 5 O 1.21557 * 120.00529 * 0.02562 * 4 3 2 6 6 C 1.47849 * 119.99783 * 180.02562 * 4 3 2 7 7 C 1.39489 * 120.04414 * 0.02562 * 6 4 3 8 8 C 1.37927 * 119.76944 * 179.97438 * 7 6 4 9 9 C 1.38262 * 120.09789 * 0.02729 * 8 7 6 10 10 C 1.38610 * 120.52171 * 359.95886 * 9 8 7 11 11 C 1.37971 * 119.93921 * 0.02562 * 10 9 8 12 12 C 1.51351 * 109.83214 * 180.02562 * 11 10 9 13 13 C 1.54606 * 105.16712 * 17.17718 * 12 11 10 14 14 C 1.51406 * 130.30257 * 180.02562 * 10 9 8 15 15 C 1.55152 * 111.03761 * 236.09336 * 2 1 3 16 16 C 1.54330 * 102.94076 * 206.40731 * 15 2 1 17 17 N 1.47017 * 107.27048 * 22.19449 * 16 15 2 18 18 C 1.36937 * 125.64844 * 181.02383 * 17 16 15 19 19 H 1.07997 * 120.00172 * 173.93748 * 18 17 16 20 20 C 1.38814 * 120.00016 * 353.94584 * 18 17 16 21 21 N 1.31621 * 120.00125 * 6.82433 * 20 18 17 22 22 Si 1.86803 * 120.00212 * 186.83160 * 20 18 17 23 23 H 1.48505 * 109.47219 * 94.97678 * 22 20 18 24 24 H 1.48495 * 109.46970 * 214.98140 * 22 20 18 25 25 H 1.48497 * 109.46820 * 334.98200 * 22 20 18 26 26 C 1.47431 * 108.70575 * 1.05537 * 17 16 15 27 27 H 1.08996 * 109.46857 * 60.70126 * 1 2 3 28 28 H 1.09001 * 109.46728 * 180.70644 * 1 2 3 29 29 H 1.09004 * 109.46869 * 300.70361 * 1 2 3 30 30 H 0.96997 * 119.99482 * 242.43032 * 3 2 1 31 31 H 1.08001 * 120.11710 * 0.02562 * 7 6 4 32 32 H 1.08001 * 119.95510 * 180.02562 * 8 7 6 33 33 H 1.07996 * 119.73581 * 179.97438 * 9 8 7 34 34 H 1.08994 * 110.30839 * 136.08900 * 12 11 10 35 35 H 1.09000 * 110.30220 * 258.24488 * 12 11 10 36 36 H 1.09002 * 110.91146 * 215.49649 * 13 12 11 37 37 H 1.09008 * 110.85567 * 91.85592 * 13 12 11 38 38 H 1.09005 * 110.30641 * 281.74001 * 14 10 9 39 39 H 1.08997 * 110.30130 * 43.79238 * 14 10 9 40 40 H 1.08994 * 110.72021 * 324.77063 * 15 2 1 41 41 H 1.08997 * 110.71945 * 88.04765 * 15 2 1 42 42 H 1.09003 * 109.87948 * 262.77357 * 16 15 2 43 43 H 1.08993 * 109.88003 * 141.61291 * 16 15 2 44 44 H 0.96991 * 120.00386 * 180.02562 * 21 20 18 45 45 H 1.08999 * 110.36741 * 217.03547 * 26 17 16 46 46 H 1.09002 * 110.45328 * 94.75726 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7877 2.1910 1.0345 5 8 1.1161 1.7969 1.9679 6 6 2.3143 3.5726 1.0342 7 6 3.0847 4.0261 -0.0366 8 6 3.5726 5.3161 -0.0313 9 6 3.2994 6.1564 1.0321 10 6 2.5346 5.7142 2.1002 11 6 2.0404 4.4261 2.1067 12 6 1.2430 4.1884 3.3710 13 6 0.9369 5.5980 3.9272 14 6 2.1045 6.4338 3.3611 15 6 2.0870 -0.8078 -1.2019 16 6 3.4684 -1.2732 -0.6950 17 7 3.4275 -1.2419 0.7742 18 6 4.4643 -1.5648 1.6085 19 1 4.3665 -1.4164 2.6738 20 6 5.6410 -2.0826 1.0850 21 7 5.8129 -2.1383 -0.2187 22 14 6.9807 -2.7006 2.2308 23 1 6.8348 -4.1666 2.4178 24 1 8.3112 -2.4068 1.6406 25 1 6.8608 -2.0198 3.5451 26 6 2.0853 -0.8060 1.2007 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3633 -1.0276 0.0127 29 1 -0.3633 0.5247 0.8837 30 1 2.5884 1.6833 -0.7447 31 1 3.2976 3.3696 -0.8674 32 1 4.1690 5.6705 -0.8590 33 1 3.6848 7.1652 1.0304 34 1 0.3161 3.6634 3.1406 35 1 1.8331 3.6183 4.0887 36 1 0.9531 5.5982 5.0171 37 1 -0.0192 5.9638 3.5527 38 1 2.9267 6.4686 4.0759 39 1 1.7671 7.4428 3.1243 40 1 1.4482 -1.6634 -1.4206 41 1 2.1930 -0.1699 -2.0793 42 1 4.2433 -0.5984 -1.0589 43 1 3.6666 -2.2883 -1.0388 44 1 6.6349 -2.5005 -0.5846 45 1 2.1554 -0.1712 2.0840 46 1 1.4512 -1.6691 1.4040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046868159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:10 Heat of formation + Delta-G solvation = 13.060604 kcal Electronic energy + Delta-G solvation = -26837.306720 eV Core-core repulsion = 23305.983491 eV Total energy + Delta-G solvation = -3531.323229 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.55097 -39.23786 -37.08554 -35.73799 -33.87774 -32.20248 -31.22744 -29.86537 -29.04154 -28.64024 -27.26175 -25.63463 -24.11117 -23.37088 -21.52742 -21.04950 -20.48185 -19.91673 -18.86119 -17.38675 -16.60086 -15.99396 -15.73799 -15.40883 -15.09991 -14.59676 -14.52444 -14.49483 -13.69782 -13.58758 -13.20135 -13.08827 -12.84205 -12.77526 -12.55371 -12.02880 -11.91551 -11.81269 -11.72376 -11.61962 -11.32760 -11.26543 -11.15131 -10.93601 -10.88988 -10.84069 -10.33860 -10.33025 -10.03994 -9.96758 -9.62167 -9.18185 -8.86161 -8.58367 -8.55122 -8.44910 -6.75181 -5.68630 -2.99013 0.94450 1.32625 3.11518 3.42935 3.48574 3.50288 3.52794 3.96417 4.32205 4.52973 4.54473 4.82534 4.91241 4.95928 5.03914 5.11639 5.19234 5.41060 5.42410 5.46978 5.50601 5.62902 5.65170 5.70317 5.76136 5.78096 5.85714 6.01258 6.03832 6.11916 6.15918 6.18530 6.21416 6.31345 6.37618 6.39052 6.42486 6.55771 6.58477 6.72048 6.87055 6.88443 7.19228 7.55273 7.62324 7.83567 7.96359 8.29900 8.64112 9.27122 9.87486 10.54205 11.43997 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.004178 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.624371 B = 6699.763099 C = 7359.497763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.157 3.843 3 N -0.697 5.697 4 C 0.560 3.440 5 O -0.534 6.534 6 C -0.117 4.117 7 C -0.085 4.085 8 C -0.129 4.129 9 C -0.088 4.088 10 C -0.113 4.113 11 C -0.033 4.033 12 C -0.080 4.080 13 C -0.123 4.123 14 C -0.079 4.079 15 C -0.147 4.147 16 C 0.177 3.823 17 N -0.603 5.603 18 C -0.221 4.221 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.923 5.923 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.132 3.868 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.396 0.604 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.121 0.879 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.041 0.959 43 H 0.046 0.954 44 H 0.251 0.749 45 H 0.056 0.944 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.396 16.825 -0.373 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.070 3.930 3 N -0.348 5.348 4 C 0.347 3.653 5 O -0.413 6.413 6 C -0.120 4.120 7 C -0.103 4.103 8 C -0.147 4.147 9 C -0.106 4.106 10 C -0.113 4.113 11 C -0.034 4.034 12 C -0.117 4.117 13 C -0.161 4.161 14 C -0.116 4.116 15 C -0.185 4.185 16 C 0.053 3.947 17 N -0.329 5.329 18 C -0.349 4.349 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.571 5.571 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.219 1.219 25 H -0.207 1.207 26 C 0.005 3.995 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.231 0.769 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.139 0.861 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -9.655 16.423 0.273 19.053 hybrid contribution 1.334 -0.274 -0.046 1.362 sum -8.321 16.149 0.227 18.168 Atomic orbital electron populations 1.21985 0.94389 1.02111 1.02224 1.21494 0.92520 0.80702 0.98288 1.45737 1.53969 1.12690 1.22358 1.18139 0.80161 0.84664 0.82352 1.90687 1.39471 1.76382 1.34731 1.19687 1.02089 0.94356 0.95825 1.21258 0.95697 0.96093 0.97295 1.20949 1.01066 0.93786 0.98917 1.20756 0.97266 0.99692 0.92879 1.20602 0.99041 0.95346 0.96352 1.20567 0.95648 0.92830 0.94351 1.21140 1.00502 0.96817 0.93206 1.22408 0.98009 0.95051 1.00599 1.21040 0.98333 0.98651 0.93622 1.23227 1.00541 0.98901 0.95867 1.21152 0.89883 0.99903 0.83801 1.44435 1.07590 1.79125 1.01735 1.19064 0.91955 1.34435 0.89464 0.90642 1.24768 0.98109 1.01572 0.95978 1.69957 1.26345 1.51371 1.09431 0.86145 0.81312 0.78891 0.79783 1.21657 1.21852 1.20707 1.21883 0.87484 0.94861 0.95278 0.93197 0.91847 0.91016 0.76935 0.85409 0.85363 0.86088 0.89226 0.89718 0.90527 0.91083 0.90230 0.90872 0.90826 0.91856 0.94107 0.93552 0.93914 0.92606 0.95744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.62 37.16 0.32 -1.99 16 2 C 0.16 2.83 0.82 -129.67 -0.11 2.73 16 3 N -0.70 -11.89 5.12 -46.55 -0.24 -12.13 16 4 C 0.56 9.94 7.16 -12.33 -0.09 9.85 16 5 O -0.53 -10.57 11.47 5.32 0.06 -10.51 16 6 C -0.12 -1.81 5.88 -104.92 -0.62 -2.43 16 7 C -0.08 -1.12 9.54 -39.23 -0.37 -1.49 16 8 C -0.13 -1.45 10.03 -39.69 -0.40 -1.85 16 9 C -0.09 -0.96 10.03 -39.43 -0.40 -1.36 16 10 C -0.11 -1.38 6.13 -104.24 -0.64 -2.02 16 11 C -0.03 -0.48 6.03 -103.82 -0.63 -1.10 16 12 C -0.08 -1.06 5.59 -26.72 -0.15 -1.21 16 13 C -0.12 -1.19 7.10 -25.18 -0.18 -1.37 16 14 C -0.08 -0.75 6.76 -26.83 -0.18 -0.94 16 15 C -0.15 -2.64 5.99 -24.90 -0.15 -2.79 16 16 C 0.18 4.24 5.37 -3.06 -0.02 4.22 16 17 N -0.60 -15.73 3.39 -170.07 -0.58 -16.31 16 18 C -0.22 -6.36 10.26 -15.06 -0.15 -6.52 16 19 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 20 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 21 N -0.92 -27.20 10.36 55.49 0.58 -26.63 16 22 Si 0.91 22.68 29.56 -169.99 -5.02 17.65 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.13 2.96 6.11 -2.53 -0.02 2.94 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 29 H 0.07 1.21 6.45 -51.93 -0.34 0.87 16 30 H 0.40 6.01 6.51 -40.82 -0.27 5.74 16 31 H 0.13 1.49 6.40 -52.49 -0.34 1.15 16 32 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.09 1.28 7.19 -51.93 -0.37 0.91 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 1.24 8.04 -51.93 -0.42 0.82 16 41 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 42 H 0.04 1.06 7.55 -51.93 -0.39 0.67 16 43 H 0.05 1.23 7.37 -51.93 -0.38 0.85 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.06 1.36 6.31 -51.93 -0.33 1.03 16 46 H 0.02 0.55 8.03 -51.93 -0.42 0.14 16 LS Contribution 359.28 15.07 5.41 5.41 Total: -1.00 -32.73 359.28 -10.67 -43.40 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.01 Total: 4.75 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -3.87 Total: -5.65 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.24 Total: -55.07 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.06 Total: -10.51 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.73 -10.67 -43.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046868159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.464 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds