Wall clock time and date at job start Tue Mar 31 2020 11:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46508 * 110.88456 * 2 1 4 4 C 1.34770 * 120.00075 * 62.42187 * 3 2 1 5 5 O 1.21557 * 120.00529 * 0.02562 * 4 3 2 6 6 C 1.47849 * 119.99783 * 180.02562 * 4 3 2 7 7 C 1.39489 * 120.04414 * 0.02562 * 6 4 3 8 8 C 1.37927 * 119.76944 * 179.97438 * 7 6 4 9 9 C 1.38262 * 120.09789 * 0.02729 * 8 7 6 10 10 C 1.38610 * 120.52171 * 359.95886 * 9 8 7 11 11 C 1.37971 * 119.93921 * 0.02562 * 10 9 8 12 12 C 1.51351 * 109.83214 * 180.02562 * 11 10 9 13 13 C 1.54606 * 105.16712 * 17.17718 * 12 11 10 14 14 C 1.51406 * 130.30257 * 180.02562 * 10 9 8 15 15 C 1.55152 * 111.03761 * 236.09336 * 2 1 3 16 16 C 1.54330 * 102.94076 * 206.40731 * 15 2 1 17 17 N 1.47017 * 107.27048 * 22.19449 * 16 15 2 18 18 C 1.36937 * 125.64844 * 181.02383 * 17 16 15 19 19 H 1.07997 * 120.00172 * 173.93748 * 18 17 16 20 20 C 1.38814 * 120.00016 * 353.94584 * 18 17 16 21 21 N 1.31621 * 120.00125 * 6.82433 * 20 18 17 22 22 Si 1.86803 * 120.00212 * 186.83160 * 20 18 17 23 23 H 1.48505 * 109.47219 * 94.97678 * 22 20 18 24 24 H 1.48495 * 109.46970 * 214.98140 * 22 20 18 25 25 H 1.48497 * 109.46820 * 334.98200 * 22 20 18 26 26 C 1.47431 * 108.70575 * 1.05537 * 17 16 15 27 27 H 1.08996 * 109.46857 * 60.70126 * 1 2 3 28 28 H 1.09001 * 109.46728 * 180.70644 * 1 2 3 29 29 H 1.09004 * 109.46869 * 300.70361 * 1 2 3 30 30 H 0.96997 * 119.99482 * 242.43032 * 3 2 1 31 31 H 1.08001 * 120.11710 * 0.02562 * 7 6 4 32 32 H 1.08001 * 119.95510 * 180.02562 * 8 7 6 33 33 H 1.07996 * 119.73581 * 179.97438 * 9 8 7 34 34 H 1.08994 * 110.30839 * 136.08900 * 12 11 10 35 35 H 1.09000 * 110.30220 * 258.24488 * 12 11 10 36 36 H 1.09002 * 110.91146 * 215.49649 * 13 12 11 37 37 H 1.09008 * 110.85567 * 91.85592 * 13 12 11 38 38 H 1.09005 * 110.30641 * 281.74001 * 14 10 9 39 39 H 1.08997 * 110.30130 * 43.79238 * 14 10 9 40 40 H 1.08994 * 110.72021 * 324.77063 * 15 2 1 41 41 H 1.08997 * 110.71945 * 88.04765 * 15 2 1 42 42 H 1.09003 * 109.87948 * 262.77357 * 16 15 2 43 43 H 1.08993 * 109.88003 * 141.61291 * 16 15 2 44 44 H 0.96991 * 120.00386 * 180.02562 * 21 20 18 45 45 H 1.08999 * 110.36741 * 217.03547 * 26 17 16 46 46 H 1.09002 * 110.45328 * 94.75726 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7877 2.1910 1.0345 5 8 1.1161 1.7969 1.9679 6 6 2.3143 3.5726 1.0342 7 6 3.0847 4.0261 -0.0366 8 6 3.5726 5.3161 -0.0313 9 6 3.2994 6.1564 1.0321 10 6 2.5346 5.7142 2.1002 11 6 2.0404 4.4261 2.1067 12 6 1.2430 4.1884 3.3710 13 6 0.9369 5.5980 3.9272 14 6 2.1045 6.4338 3.3611 15 6 2.0870 -0.8078 -1.2019 16 6 3.4684 -1.2732 -0.6950 17 7 3.4275 -1.2419 0.7742 18 6 4.4643 -1.5648 1.6085 19 1 4.3665 -1.4164 2.6738 20 6 5.6410 -2.0826 1.0850 21 7 5.8129 -2.1383 -0.2187 22 14 6.9807 -2.7006 2.2308 23 1 6.8348 -4.1666 2.4178 24 1 8.3112 -2.4068 1.6406 25 1 6.8608 -2.0198 3.5451 26 6 2.0853 -0.8060 1.2007 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3633 -1.0276 0.0127 29 1 -0.3633 0.5247 0.8837 30 1 2.5884 1.6833 -0.7447 31 1 3.2976 3.3696 -0.8674 32 1 4.1690 5.6705 -0.8590 33 1 3.6848 7.1652 1.0304 34 1 0.3161 3.6634 3.1406 35 1 1.8331 3.6183 4.0887 36 1 0.9531 5.5982 5.0171 37 1 -0.0192 5.9638 3.5527 38 1 2.9267 6.4686 4.0759 39 1 1.7671 7.4428 3.1243 40 1 1.4482 -1.6634 -1.4206 41 1 2.1930 -0.1699 -2.0793 42 1 4.2433 -0.5984 -1.0589 43 1 3.6666 -2.2883 -1.0388 44 1 6.6349 -2.5005 -0.5846 45 1 2.1554 -0.1712 2.0840 46 1 1.4512 -1.6691 1.4040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046868159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:09 Heat of formation + Delta-G solvation = -6.113885 kcal Electronic energy + Delta-G solvation = -26838.138188 eV Core-core repulsion = 23305.983491 eV Total energy + Delta-G solvation = -3532.154697 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.70846 -40.51061 -38.66738 -36.66646 -35.65227 -33.77704 -32.60638 -31.44363 -30.33743 -29.94210 -28.19466 -27.53963 -25.60306 -24.79215 -22.58346 -22.16008 -22.03541 -21.24618 -20.31911 -19.05028 -18.17551 -17.24808 -16.80099 -16.70579 -16.53601 -16.12971 -15.94072 -15.66102 -15.48379 -15.07966 -14.48634 -14.20951 -14.03597 -13.91085 -13.72270 -13.62095 -13.52331 -13.33463 -13.08678 -12.87450 -12.76542 -12.66841 -12.32790 -12.18664 -12.14353 -12.05757 -11.99735 -11.94639 -11.75848 -11.71740 -11.54288 -10.71653 -10.57023 -10.06539 -9.75198 -9.49717 -8.87419 -7.89448 -5.21959 -0.09397 0.37814 1.41084 1.42841 1.51679 1.92688 2.22633 2.46001 2.87153 3.28605 3.43778 3.52540 3.64843 3.69175 3.85556 4.01935 4.03618 4.16945 4.17407 4.19912 4.30073 4.48386 4.57507 4.61634 4.68248 4.77862 4.79999 4.85020 4.88827 4.90888 4.95065 5.01680 5.03455 5.05982 5.13103 5.19700 5.30888 5.33568 5.39261 5.40399 5.46328 5.59582 5.62651 5.69095 5.75110 5.96791 6.17776 6.62862 7.09352 7.29872 7.75010 8.40124 9.20990 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.004178 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.624371 B = 6699.763099 C = 7359.497763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.166 3.834 3 N -0.696 5.696 4 C 0.553 3.447 5 O -0.565 6.565 6 C -0.148 4.148 7 C -0.094 4.094 8 C -0.127 4.127 9 C -0.082 4.082 10 C -0.117 4.117 11 C -0.062 4.062 12 C -0.082 4.082 13 C -0.115 4.115 14 C -0.076 4.076 15 C -0.128 4.128 16 C 0.185 3.815 17 N -0.621 5.621 18 C -0.244 4.244 19 H 0.065 0.935 20 C -0.056 4.056 21 N -0.943 5.943 22 Si 0.972 3.028 23 H -0.285 1.285 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.129 3.871 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.404 0.596 31 H 0.137 0.863 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.013 0.987 43 H 0.013 0.987 44 H 0.248 0.752 45 H 0.029 0.971 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.452 19.242 -1.145 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.079 3.921 3 N -0.347 5.347 4 C 0.342 3.658 5 O -0.445 6.445 6 C -0.151 4.151 7 C -0.113 4.113 8 C -0.144 4.144 9 C -0.100 4.100 10 C -0.117 4.117 11 C -0.063 4.063 12 C -0.119 4.119 13 C -0.152 4.152 14 C -0.112 4.112 15 C -0.166 4.166 16 C 0.061 3.939 17 N -0.347 5.347 18 C -0.373 4.373 19 H 0.083 0.917 20 C -0.249 4.249 21 N -0.591 5.591 22 Si 0.800 3.200 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.202 1.202 26 C 0.003 3.997 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.241 0.759 31 H 0.154 0.846 32 H 0.177 0.823 33 H 0.174 0.826 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.031 0.969 43 H 0.031 0.969 44 H 0.058 0.942 45 H 0.047 0.953 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -9.728 18.854 -0.510 21.222 hybrid contribution 1.378 -1.004 0.226 1.720 sum -8.350 17.850 -0.284 19.709 Atomic orbital electron populations 1.21903 0.91906 1.03106 1.02766 1.21380 0.94141 0.80746 0.95808 1.45719 1.54122 1.12138 1.22721 1.18637 0.79637 0.85728 0.81839 1.90662 1.40888 1.77237 1.35744 1.19723 1.04215 0.93365 0.97752 1.21461 0.95542 0.97407 0.96894 1.21359 1.00384 0.92795 0.99902 1.21213 0.95824 1.01124 0.91831 1.21016 0.98580 0.94489 0.97639 1.20850 0.96770 0.94122 0.94530 1.21124 0.99069 0.98811 0.92943 1.22409 0.98799 0.92471 1.01512 1.21108 0.98281 0.99409 0.92436 1.23107 0.96886 1.00045 0.96607 1.20947 0.92813 0.97493 0.82681 1.44680 1.08267 1.79106 1.02639 1.19285 0.93326 1.35082 0.89639 0.91739 1.25522 1.00115 1.01756 0.97542 1.70146 1.26653 1.51617 1.10699 0.85163 0.78481 0.78240 0.78086 1.21151 1.21463 1.20169 1.21975 0.86306 0.94978 0.96459 0.90496 0.90562 0.92646 0.75881 0.84550 0.82267 0.82579 0.91423 0.91816 0.88941 0.90118 0.89328 0.88227 0.88839 0.88428 0.96863 0.96899 0.94220 0.95292 0.95772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 8.62 71.98 0.62 -3.52 16 2 C 0.17 5.98 0.82 4.99 0.00 5.98 16 3 N -0.70 -23.92 5.12 -419.47 -2.15 -26.07 16 4 C 0.55 20.38 7.16 86.79 0.62 21.01 16 5 O -0.56 -23.70 11.47 -3.89 -0.04 -23.75 16 6 C -0.15 -4.67 5.88 -20.06 -0.12 -4.79 16 7 C -0.09 -2.40 9.54 22.50 0.21 -2.19 16 8 C -0.13 -2.52 10.03 22.20 0.22 -2.29 16 9 C -0.08 -1.54 10.03 22.36 0.22 -1.31 16 10 C -0.12 -2.63 6.13 -19.61 -0.12 -2.75 16 11 C -0.06 -1.80 6.03 -19.35 -0.12 -1.92 16 12 C -0.08 -2.28 5.59 30.60 0.17 -2.11 16 13 C -0.11 -2.08 7.10 31.60 0.22 -1.85 16 14 C -0.08 -1.23 6.76 30.53 0.21 -1.03 16 15 C -0.13 -4.45 5.99 31.78 0.19 -4.26 16 16 C 0.19 9.06 5.37 86.73 0.47 9.52 16 17 N -0.62 -33.57 3.39 -691.98 -2.35 -35.91 16 18 C -0.24 -14.60 10.26 84.03 0.86 -13.73 16 19 H 0.06 3.87 7.84 -2.91 -0.02 3.85 16 20 C -0.06 -3.27 5.48 84.86 0.47 -2.81 16 21 N -0.94 -56.87 10.36 21.65 0.22 -56.65 16 22 Si 0.97 47.47 29.56 68.60 2.03 49.50 16 23 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 25 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 26 C 0.13 6.00 6.11 86.85 0.53 6.53 16 27 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.08 2.07 8.13 -2.39 -0.02 2.06 16 29 H 0.05 1.87 6.45 -2.38 -0.02 1.85 16 30 H 0.40 12.15 6.51 -92.71 -0.60 11.55 16 31 H 0.14 3.07 6.40 -2.91 -0.02 3.05 16 32 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 33 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 34 H 0.07 2.10 7.19 -2.39 -0.02 2.09 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 2.92 8.04 -2.39 -0.02 2.90 16 41 H 0.10 2.76 8.05 -2.39 -0.02 2.74 16 42 H 0.01 0.71 7.55 -2.39 -0.02 0.69 16 43 H 0.01 0.70 7.37 -2.39 -0.02 0.69 16 44 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 45 H 0.03 1.49 6.31 -2.39 -0.02 1.47 16 46 H 0.02 1.13 8.03 -2.39 -0.02 1.11 16 Total: -1.00 -75.13 359.28 2.76 -72.37 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.38 Total: 22.02 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 4.67 Total: -1.51 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -4.27 Total: -118.63 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.04 Total: -23.75 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -75.13 2.76 -72.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046868159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.257 kcal (2) G-P(sol) polarization free energy of solvation -75.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds