Wall clock time and date at job start Tue Mar 31 2020 11:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 110.64182 * 2 1 4 4 C 1.34777 * 119.99427 * 300.69873 * 3 2 1 5 5 O 1.21549 * 120.00545 * 359.97438 * 4 3 2 6 6 C 1.47855 * 119.99593 * 180.02562 * 4 3 2 7 7 C 1.39490 * 120.04061 * 359.72370 * 6 4 3 8 8 C 1.37936 * 119.76270 * 179.83923 * 7 6 4 9 9 C 1.38262 * 120.09909 * 0.37631 * 8 7 6 10 10 C 1.38618 * 120.52580 * 359.84622 * 9 8 7 11 11 C 1.37977 * 119.93137 * 359.97438 * 10 9 8 12 12 C 1.51346 * 109.83169 * 179.97438 * 11 10 9 13 13 C 1.54352 * 105.14892 * 17.16834 * 12 11 10 14 14 C 1.51394 * 130.30775 * 179.97438 * 10 9 8 15 15 C 1.55163 * 110.72224 * 123.33138 * 2 1 3 16 16 C 1.54904 * 101.58073 * 153.86702 * 15 2 1 17 17 N 1.47421 * 104.83620 * 322.98869 * 16 15 2 18 18 C 1.36936 * 125.65035 * 204.09628 * 17 16 15 19 19 H 1.08003 * 119.99872 * 180.02562 * 18 17 16 20 20 C 1.38807 * 119.99824 * 0.04033 * 18 17 16 21 21 N 1.31611 * 120.00200 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99647 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47242 * 90.00411 * 22 20 18 24 24 H 1.48497 * 109.47394 * 210.00240 * 22 20 18 25 25 H 1.48505 * 109.47356 * 330.00480 * 22 20 18 26 26 C 1.47025 * 108.70178 * 24.13268 * 17 16 15 27 27 H 1.09002 * 109.47153 * 181.69032 * 1 2 3 28 28 H 1.09001 * 109.46832 * 61.69223 * 1 2 3 29 29 H 1.09004 * 109.47261 * 301.69204 * 1 2 3 30 30 H 0.96991 * 120.00254 * 120.70119 * 3 2 1 31 31 H 1.07991 * 120.11943 * 359.97438 * 7 6 4 32 32 H 1.08002 * 119.94905 * 180.21782 * 8 7 6 33 33 H 1.07996 * 119.73708 * 179.81836 * 9 8 7 34 34 H 1.08991 * 110.30881 * 136.09011 * 12 11 10 35 35 H 1.09003 * 110.30790 * 258.15391 * 12 11 10 36 36 H 1.09000 * 110.82942 * 91.91889 * 13 12 11 37 37 H 1.09006 * 110.83032 * 215.48417 * 13 12 11 38 38 H 1.09001 * 110.30402 * 43.94292 * 14 10 9 39 39 H 1.08994 * 110.30197 * 281.78717 * 14 10 9 40 40 H 1.08995 * 111.00334 * 271.94352 * 15 2 1 41 41 H 1.08999 * 111.00142 * 35.79064 * 15 2 1 42 42 H 1.09007 * 110.36208 * 204.15318 * 16 15 2 43 43 H 1.08996 * 110.45982 * 81.88497 * 16 15 2 44 44 H 0.97004 * 119.99847 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.88484 * 239.52534 * 26 17 16 46 46 H 1.08998 * 110.01061 * 118.42466 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.7263 2.2116 -1.0037 5 8 1.0095 1.8322 -1.9091 6 6 2.2480 3.5950 -1.0040 7 6 3.0668 4.0328 0.0369 8 6 3.5530 5.3237 0.0292 9 6 3.2233 6.1826 -1.0029 10 6 2.4065 5.7574 -2.0390 11 6 1.9167 4.4675 -2.0447 12 6 1.0569 4.2501 -3.2710 13 6 1.4270 5.3997 -4.2322 14 6 1.9105 6.4986 -3.2624 15 6 2.0790 -0.7974 1.2125 16 6 3.4633 -1.2508 0.6855 17 7 3.2446 -1.5495 -0.7415 18 6 4.0044 -2.3945 -1.5056 19 1 3.7612 -2.5466 -2.5468 20 6 5.0868 -3.0557 -0.9418 21 7 5.3826 -2.8709 0.3273 22 14 6.1237 -4.2078 -1.9844 23 1 7.2333 -3.4451 -2.6107 24 1 6.6843 -5.2824 -1.1264 25 1 5.2778 -4.8119 -3.0450 26 6 2.0761 -0.7892 -1.2086 27 1 -0.3633 -1.0272 0.0303 28 1 -0.3633 0.4873 -0.9048 29 1 -0.3634 0.5399 0.8744 30 1 2.6187 1.6737 0.7222 31 1 3.3209 3.3629 0.8449 32 1 4.1901 5.6647 0.8318 33 1 3.6048 7.1929 -1.0016 34 1 1.2854 3.2871 -3.7274 35 1 0.0007 4.3015 -3.0065 36 1 2.2287 5.0983 -4.9064 37 1 0.5532 5.7335 -4.7919 38 1 2.7218 7.0703 -3.7130 39 1 1.0846 7.1579 -2.9961 40 1 2.1850 -0.1553 2.0868 41 1 1.4452 -1.6559 1.4348 42 1 3.7960 -2.1446 1.2135 43 1 4.1946 -0.4504 0.7979 44 1 6.1388 -3.3333 0.7213 45 1 1.3130 -1.4732 -1.5799 46 1 2.3716 -0.0992 -1.9989 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046868161.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:14 Heat of formation + Delta-G solvation = 14.731428 kcal Electronic energy + Delta-G solvation = -26640.641419 eV Core-core repulsion = 23109.390642 eV Total energy + Delta-G solvation = -3531.250777 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.62338 -39.30032 -37.13269 -35.80385 -33.95483 -32.24308 -31.26341 -29.84535 -29.09939 -28.64411 -27.31872 -25.65024 -24.15053 -23.37193 -21.55674 -21.10299 -20.47175 -20.05496 -18.86532 -17.40774 -16.69268 -16.06578 -15.77267 -15.45485 -15.18014 -14.63362 -14.61423 -14.49014 -13.67962 -13.58244 -13.22508 -13.01035 -12.90660 -12.80823 -12.60152 -12.20374 -11.92490 -11.88311 -11.70709 -11.54146 -11.36273 -11.32026 -11.20291 -10.96994 -10.91580 -10.84088 -10.36564 -10.32049 -10.06574 -9.89470 -9.62765 -9.20636 -8.93282 -8.63622 -8.62361 -8.53422 -6.78405 -5.62718 -3.02832 0.87476 1.25906 3.04429 3.42254 3.45791 3.47632 3.49478 3.88570 4.27806 4.47606 4.52271 4.76964 4.85184 4.92400 4.99203 5.09060 5.18830 5.36154 5.40116 5.43472 5.52917 5.57620 5.60061 5.65921 5.74282 5.76465 5.80358 5.96196 6.06094 6.09454 6.13460 6.20727 6.24908 6.25757 6.32595 6.39098 6.46626 6.51198 6.55213 6.73957 6.80657 6.87165 7.18208 7.47386 7.66109 7.82765 7.91067 8.37784 8.56848 9.25874 9.86668 10.51693 11.41691 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015761 B = 0.003597 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.058982 B = 7781.363209 C = 8061.973469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.160 3.840 3 N -0.704 5.704 4 C 0.557 3.443 5 O -0.531 6.531 6 C -0.118 4.118 7 C -0.086 4.086 8 C -0.129 4.129 9 C -0.087 4.087 10 C -0.112 4.112 11 C -0.033 4.033 12 C -0.080 4.080 13 C -0.124 4.124 14 C -0.079 4.079 15 C -0.146 4.146 16 C 0.153 3.847 17 N -0.604 5.604 18 C -0.217 4.217 19 H 0.076 0.924 20 C -0.013 4.013 21 N -0.925 5.925 22 Si 0.914 3.086 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.138 3.862 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.395 0.605 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.010 0.990 44 H 0.251 0.749 45 H 0.030 0.970 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.768 18.940 0.151 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.074 3.926 3 N -0.354 5.354 4 C 0.345 3.655 5 O -0.410 6.410 6 C -0.121 4.121 7 C -0.105 4.105 8 C -0.147 4.147 9 C -0.106 4.106 10 C -0.113 4.113 11 C -0.034 4.034 12 C -0.117 4.117 13 C -0.162 4.162 14 C -0.116 4.116 15 C -0.185 4.185 16 C 0.028 3.972 17 N -0.330 5.330 18 C -0.345 4.345 19 H 0.094 0.906 20 C -0.208 4.208 21 N -0.574 5.574 22 Si 0.744 3.256 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.011 3.989 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.231 0.769 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.126 0.874 43 H 0.028 0.972 44 H 0.062 0.938 45 H 0.048 0.952 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.109 18.480 -0.487 20.187 hybrid contribution 1.095 -0.363 0.021 1.154 sum -7.015 18.117 -0.466 19.433 Atomic orbital electron populations 1.22043 0.94219 1.02088 1.02436 1.21350 0.93020 0.80246 0.97994 1.45925 1.51661 1.12404 1.25457 1.18182 0.80620 0.84650 0.82097 1.90699 1.37453 1.77345 1.35455 1.19692 1.01722 0.94177 0.96490 1.21266 0.95749 0.96270 0.97207 1.20958 1.01035 0.93678 0.99013 1.20772 0.96912 0.99668 0.93213 1.20617 0.98571 0.95118 0.96945 1.20588 0.95369 0.92782 0.94696 1.21099 0.98706 1.00018 0.91875 1.22366 1.01401 0.95062 0.97324 1.21038 1.00512 0.97660 0.92419 1.23356 1.01285 0.98818 0.95084 1.21930 0.89343 1.00639 0.85311 1.44500 1.30778 1.50352 1.07370 1.19101 1.06091 1.16437 0.92901 0.90568 1.24746 0.98781 1.00786 0.96443 1.69773 1.30152 1.46603 1.10901 0.86077 0.80258 0.80247 0.78986 1.21729 1.21674 1.20692 1.21591 0.90261 0.93093 0.93941 0.91810 0.90787 0.93235 0.76938 0.85381 0.85314 0.86032 0.89029 0.89909 0.90913 0.90525 0.90757 0.90289 0.91967 0.90476 0.87439 0.97236 0.93841 0.95226 0.94962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.36 37.16 0.31 -2.10 16 2 C 0.16 2.93 0.81 -129.98 -0.11 2.82 16 3 N -0.70 -11.68 5.10 -46.83 -0.24 -11.92 16 4 C 0.56 9.58 6.99 -12.32 -0.09 9.50 16 5 O -0.53 -10.30 11.67 5.32 0.06 -10.24 16 6 C -0.12 -1.74 5.88 -104.92 -0.62 -2.36 16 7 C -0.09 -1.06 9.54 -39.23 -0.37 -1.44 16 8 C -0.13 -1.35 10.03 -39.68 -0.40 -1.75 16 9 C -0.09 -0.90 10.03 -39.43 -0.40 -1.30 16 10 C -0.11 -1.29 6.13 -104.24 -0.64 -1.93 16 11 C -0.03 -0.46 6.03 -103.82 -0.63 -1.09 16 12 C -0.08 -1.02 5.58 -26.86 -0.15 -1.17 16 13 C -0.12 -1.18 7.08 -25.33 -0.18 -1.36 16 14 C -0.08 -0.71 6.77 -26.85 -0.18 -0.89 16 15 C -0.15 -2.70 6.09 -24.58 -0.15 -2.85 16 16 C 0.15 3.66 5.87 -2.53 -0.01 3.64 16 17 N -0.60 -15.90 3.39 -170.08 -0.58 -16.48 16 18 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16 19 H 0.08 2.16 7.83 -52.48 -0.41 1.74 16 20 C -0.01 -0.36 5.49 -17.44 -0.10 -0.46 16 21 N -0.92 -27.02 10.09 55.49 0.56 -26.46 16 22 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.14 3.14 6.16 -3.06 -0.02 3.12 16 27 H 0.06 0.99 8.13 -51.93 -0.42 0.56 16 28 H 0.07 1.29 6.27 -51.93 -0.33 0.96 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.40 5.72 6.51 -40.82 -0.27 5.45 16 31 H 0.13 1.37 6.40 -52.49 -0.34 1.04 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.09 1.36 7.19 -51.93 -0.37 0.98 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.96 8.06 -51.93 -0.42 0.55 16 41 H 0.08 1.39 8.04 -51.93 -0.42 0.98 16 42 H 0.11 2.90 5.87 -51.93 -0.30 2.59 16 43 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.03 0.69 7.82 -51.93 -0.41 0.28 16 46 H 0.03 0.80 6.68 -51.93 -0.35 0.46 16 LS Contribution 358.44 15.07 5.40 5.40 Total: -1.00 -32.50 358.44 -10.66 -43.16 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -6.97 Total: 5.05 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -3.88 Total: -6.00 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.26 Total: -54.86 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.06 Total: -10.24 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.50 -10.66 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046868161.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.891 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds