Wall clock time and date at job start Tue Mar 31 2020 11:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 110.64182 * 2 1 4 4 C 1.34777 * 119.99427 * 300.69873 * 3 2 1 5 5 O 1.21549 * 120.00545 * 359.97438 * 4 3 2 6 6 C 1.47855 * 119.99593 * 180.02562 * 4 3 2 7 7 C 1.39490 * 120.04061 * 359.72370 * 6 4 3 8 8 C 1.37936 * 119.76270 * 179.83923 * 7 6 4 9 9 C 1.38262 * 120.09909 * 0.37631 * 8 7 6 10 10 C 1.38618 * 120.52580 * 359.84622 * 9 8 7 11 11 C 1.37977 * 119.93137 * 359.97438 * 10 9 8 12 12 C 1.51346 * 109.83169 * 179.97438 * 11 10 9 13 13 C 1.54352 * 105.14892 * 17.16834 * 12 11 10 14 14 C 1.51394 * 130.30775 * 179.97438 * 10 9 8 15 15 C 1.55163 * 110.72224 * 123.33138 * 2 1 3 16 16 C 1.54904 * 101.58073 * 153.86702 * 15 2 1 17 17 N 1.47421 * 104.83620 * 322.98869 * 16 15 2 18 18 C 1.36936 * 125.65035 * 204.09628 * 17 16 15 19 19 H 1.08003 * 119.99872 * 180.02562 * 18 17 16 20 20 C 1.38807 * 119.99824 * 0.04033 * 18 17 16 21 21 N 1.31611 * 120.00200 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99647 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47242 * 90.00411 * 22 20 18 24 24 H 1.48497 * 109.47394 * 210.00240 * 22 20 18 25 25 H 1.48505 * 109.47356 * 330.00480 * 22 20 18 26 26 C 1.47025 * 108.70178 * 24.13268 * 17 16 15 27 27 H 1.09002 * 109.47153 * 181.69032 * 1 2 3 28 28 H 1.09001 * 109.46832 * 61.69223 * 1 2 3 29 29 H 1.09004 * 109.47261 * 301.69204 * 1 2 3 30 30 H 0.96991 * 120.00254 * 120.70119 * 3 2 1 31 31 H 1.07991 * 120.11943 * 359.97438 * 7 6 4 32 32 H 1.08002 * 119.94905 * 180.21782 * 8 7 6 33 33 H 1.07996 * 119.73708 * 179.81836 * 9 8 7 34 34 H 1.08991 * 110.30881 * 136.09011 * 12 11 10 35 35 H 1.09003 * 110.30790 * 258.15391 * 12 11 10 36 36 H 1.09000 * 110.82942 * 91.91889 * 13 12 11 37 37 H 1.09006 * 110.83032 * 215.48417 * 13 12 11 38 38 H 1.09001 * 110.30402 * 43.94292 * 14 10 9 39 39 H 1.08994 * 110.30197 * 281.78717 * 14 10 9 40 40 H 1.08995 * 111.00334 * 271.94352 * 15 2 1 41 41 H 1.08999 * 111.00142 * 35.79064 * 15 2 1 42 42 H 1.09007 * 110.36208 * 204.15318 * 16 15 2 43 43 H 1.08996 * 110.45982 * 81.88497 * 16 15 2 44 44 H 0.97004 * 119.99847 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.88484 * 239.52534 * 26 17 16 46 46 H 1.08998 * 110.01061 * 118.42466 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.7263 2.2116 -1.0037 5 8 1.0095 1.8322 -1.9091 6 6 2.2480 3.5950 -1.0040 7 6 3.0668 4.0328 0.0369 8 6 3.5530 5.3237 0.0292 9 6 3.2233 6.1826 -1.0029 10 6 2.4065 5.7574 -2.0390 11 6 1.9167 4.4675 -2.0447 12 6 1.0569 4.2501 -3.2710 13 6 1.4270 5.3997 -4.2322 14 6 1.9105 6.4986 -3.2624 15 6 2.0790 -0.7974 1.2125 16 6 3.4633 -1.2508 0.6855 17 7 3.2446 -1.5495 -0.7415 18 6 4.0044 -2.3945 -1.5056 19 1 3.7612 -2.5466 -2.5468 20 6 5.0868 -3.0557 -0.9418 21 7 5.3826 -2.8709 0.3273 22 14 6.1237 -4.2078 -1.9844 23 1 7.2333 -3.4451 -2.6107 24 1 6.6843 -5.2824 -1.1264 25 1 5.2778 -4.8119 -3.0450 26 6 2.0761 -0.7892 -1.2086 27 1 -0.3633 -1.0272 0.0303 28 1 -0.3633 0.4873 -0.9048 29 1 -0.3634 0.5399 0.8744 30 1 2.6187 1.6737 0.7222 31 1 3.3209 3.3629 0.8449 32 1 4.1901 5.6647 0.8318 33 1 3.6048 7.1929 -1.0016 34 1 1.2854 3.2871 -3.7274 35 1 0.0007 4.3015 -3.0065 36 1 2.2287 5.0983 -4.9064 37 1 0.5532 5.7335 -4.7919 38 1 2.7218 7.0703 -3.7130 39 1 1.0846 7.1579 -2.9961 40 1 2.1850 -0.1553 2.0868 41 1 1.4452 -1.6559 1.4348 42 1 3.7960 -2.1446 1.2135 43 1 4.1946 -0.4504 0.7979 44 1 6.1388 -3.3333 0.7213 45 1 1.3130 -1.4732 -1.5799 46 1 2.3716 -0.0992 -1.9989 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046868161.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:13 Heat of formation + Delta-G solvation = -4.168389 kcal Electronic energy + Delta-G solvation = -26641.460977 eV Core-core repulsion = 23109.390642 eV Total energy + Delta-G solvation = -3532.070334 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.74713 -40.54198 -38.70925 -36.68740 -35.71301 -33.78326 -32.62416 -31.41333 -30.36316 -29.95598 -28.20684 -27.57142 -25.60583 -24.78237 -22.54612 -22.25455 -22.03220 -21.28978 -20.33329 -19.05445 -18.23664 -17.30969 -16.81935 -16.71673 -16.52684 -16.20627 -15.90345 -15.58073 -15.55388 -14.95973 -14.41812 -14.33255 -14.07394 -14.03958 -13.73071 -13.70742 -13.43222 -13.33164 -13.10419 -12.85908 -12.78711 -12.68498 -12.29793 -12.18393 -12.13146 -12.05074 -12.00477 -11.97636 -11.76327 -11.70646 -11.52384 -10.77401 -10.59507 -10.11107 -9.76845 -9.50172 -8.91122 -7.80813 -5.24554 -0.10925 0.37162 1.43524 1.45147 1.54316 1.90095 2.17177 2.46713 2.85452 3.28402 3.43385 3.54595 3.64793 3.68500 3.83232 3.99686 4.01361 4.15056 4.16382 4.19303 4.28964 4.47861 4.56774 4.61083 4.65252 4.77662 4.79302 4.83119 4.87952 4.88305 4.94754 4.99100 5.02281 5.06516 5.12449 5.19306 5.29459 5.31615 5.38614 5.40268 5.45927 5.58526 5.59098 5.66896 5.78074 5.96031 6.28651 6.59916 7.09003 7.26537 7.74609 8.38535 9.20640 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015761 B = 0.003597 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.058982 B = 7781.363209 C = 8061.973469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.170 3.830 3 N -0.700 5.700 4 C 0.551 3.449 5 O -0.563 6.563 6 C -0.147 4.147 7 C -0.094 4.094 8 C -0.126 4.126 9 C -0.082 4.082 10 C -0.116 4.116 11 C -0.062 4.062 12 C -0.082 4.082 13 C -0.119 4.119 14 C -0.074 4.074 15 C -0.127 4.127 16 C 0.156 3.844 17 N -0.623 5.623 18 C -0.245 4.245 19 H 0.068 0.932 20 C -0.059 4.059 21 N -0.943 5.943 22 Si 0.978 3.022 23 H -0.288 1.288 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.138 3.862 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.406 0.594 31 H 0.139 0.861 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.078 0.922 43 H -0.009 1.009 44 H 0.249 0.751 45 H 0.022 0.978 46 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.593 21.346 1.061 22.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.083 3.917 3 N -0.352 5.352 4 C 0.340 3.660 5 O -0.444 6.444 6 C -0.150 4.150 7 C -0.113 4.113 8 C -0.143 4.143 9 C -0.100 4.100 10 C -0.116 4.116 11 C -0.063 4.063 12 C -0.119 4.119 13 C -0.156 4.156 14 C -0.111 4.111 15 C -0.166 4.166 16 C 0.031 3.969 17 N -0.349 5.349 18 C -0.374 4.374 19 H 0.086 0.914 20 C -0.252 4.252 21 N -0.592 5.592 22 Si 0.806 3.194 23 H -0.215 1.215 24 H -0.212 1.212 25 H -0.199 1.199 26 C 0.012 3.988 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.243 0.757 31 H 0.157 0.843 32 H 0.178 0.822 33 H 0.174 0.826 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.009 0.991 44 H 0.059 0.941 45 H 0.040 0.960 46 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -7.941 20.907 0.441 22.369 hybrid contribution 1.081 -1.073 -0.292 1.551 sum -6.861 19.834 0.149 20.987 Atomic orbital electron populations 1.21955 0.92128 1.02815 1.02904 1.21175 0.94367 0.80625 0.95488 1.45844 1.51891 1.11552 1.25928 1.18700 0.80051 0.85753 0.81456 1.90676 1.38950 1.78206 1.36525 1.19689 1.03885 0.92996 0.98459 1.21482 0.95397 0.97593 0.96802 1.21371 1.00485 0.92682 0.99810 1.21227 0.95483 1.01117 0.92127 1.21011 0.98225 0.94283 0.98122 1.20861 0.96434 0.94122 0.94922 1.21078 0.98529 0.99702 0.92564 1.22376 1.02198 0.94069 0.96962 1.21095 1.01706 0.97282 0.90987 1.23211 0.97571 0.99702 0.96076 1.21757 0.92241 0.98742 0.84164 1.44783 1.31343 1.50359 1.08426 1.19373 1.07248 1.17626 0.93194 0.91369 1.25540 0.99726 1.02154 0.97737 1.70003 1.30221 1.47024 1.12001 0.85086 0.78451 0.78195 0.77630 1.21492 1.21164 1.19878 1.21648 0.89121 0.92595 0.95455 0.91084 0.92365 0.90526 0.75658 0.84301 0.82172 0.82587 0.92503 0.90364 0.91240 0.88476 0.88750 0.88452 0.88092 0.89600 0.90426 0.99056 0.94096 0.96037 0.97786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 8.36 71.98 0.60 -3.80 16 2 C 0.17 6.23 0.81 4.79 0.00 6.23 16 3 N -0.70 -23.36 5.10 -420.36 -2.14 -25.51 16 4 C 0.55 19.64 6.99 86.79 0.61 20.25 16 5 O -0.56 -23.20 11.67 -3.87 -0.05 -23.25 16 6 C -0.15 -4.41 5.88 -20.06 -0.12 -4.53 16 7 C -0.09 -2.21 9.54 22.50 0.21 -1.99 16 8 C -0.13 -2.27 10.03 22.20 0.22 -2.05 16 9 C -0.08 -1.41 10.03 22.37 0.22 -1.18 16 10 C -0.12 -2.45 6.13 -19.61 -0.12 -2.57 16 11 C -0.06 -1.73 6.03 -19.35 -0.12 -1.85 16 12 C -0.08 -2.17 5.58 30.51 0.17 -2.00 16 13 C -0.12 -2.15 7.08 31.50 0.22 -1.93 16 14 C -0.07 -1.12 6.77 30.52 0.21 -0.92 16 15 C -0.13 -4.53 6.09 31.99 0.19 -4.34 16 16 C 0.16 7.60 5.87 86.85 0.51 8.11 16 17 N -0.62 -34.00 3.39 -692.00 -2.35 -36.35 16 18 C -0.25 -14.61 10.27 84.03 0.86 -13.75 16 19 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 20 C -0.06 -3.41 5.49 84.86 0.47 -2.94 16 21 N -0.94 -56.17 10.09 21.65 0.22 -55.95 16 22 Si 0.98 46.96 29.55 68.60 2.03 48.98 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 25 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 26 C 0.14 6.58 6.16 86.73 0.53 7.11 16 27 H 0.07 2.12 8.13 -2.39 -0.02 2.10 16 28 H 0.06 2.05 6.27 -2.39 -0.01 2.03 16 29 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.41 11.50 6.51 -92.71 -0.60 10.89 16 31 H 0.14 2.79 6.40 -2.92 -0.02 2.77 16 32 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.06 1.86 7.19 -2.39 -0.02 1.84 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.10 2.85 8.06 -2.39 -0.02 2.83 16 41 H 0.09 2.96 8.04 -2.39 -0.02 2.94 16 42 H 0.08 4.29 5.87 -2.38 -0.01 4.28 16 43 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 44 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 45 H 0.02 1.05 7.82 -2.39 -0.02 1.03 16 46 H 0.00 0.22 6.68 -2.39 -0.02 0.20 16 Total: -1.00 -74.41 358.44 2.78 -71.64 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.38 Total: 22.58 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 4.69 Total: -2.14 kcal Atomic # 7 Polarization: -113.53 SS G_CDS: -4.28 Total: -117.81 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.05 Total: -23.25 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.98 kcal Total: -74.41 2.78 -71.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046868161.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.468 kcal (2) G-P(sol) polarization free energy of solvation -74.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds