Wall clock time and date at job start Tue Mar 31 2020 10:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37977 * 120.07427 * 2 1 4 4 C 1.38338 * 120.14249 * 180.25331 * 3 2 1 5 5 C 1.38378 * 120.29535 * 359.75005 * 4 3 2 6 6 C 1.37939 * 120.14600 * 359.97341 * 5 4 3 7 7 C 1.39559 * 120.07007 * 179.72650 * 2 1 3 8 8 C 1.47848 * 120.14767 * 0.02562 * 7 2 1 9 9 O 1.21544 * 119.99740 * 353.48052 * 8 7 2 10 10 N 1.34773 * 119.99717 * 173.47867 * 8 7 2 11 11 C 1.46499 * 119.99523 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.32706 * 34.64174 * 11 10 8 13 13 C 1.55520 * 109.71739 * 153.53855 * 11 10 8 14 14 C 1.53967 * 108.31138 * 175.33650 * 13 11 10 15 15 H 1.09001 * 112.99450 * 169.32386 * 14 13 11 16 16 C 1.55431 * 106.41661 * 294.13385 * 14 13 11 17 17 C 1.55178 * 100.35240 * 74.24144 * 16 14 13 18 18 H 1.08999 * 112.48555 * 162.67195 * 17 16 14 19 19 C 1.52988 * 109.32444 * 274.99702 * 11 10 8 20 20 N 1.47788 * 104.25366 * 40.55342 * 17 16 14 21 21 C 1.36937 * 125.85769 * 153.52722 * 20 17 16 22 22 H 1.07999 * 120.00341 * 0.02562 * 21 20 17 23 23 C 1.38818 * 119.99982 * 180.02562 * 21 20 17 24 24 N 1.31618 * 119.99994 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99829 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47398 * 59.99888 * 25 23 21 27 27 H 1.48498 * 109.47171 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47025 * 299.99692 * 25 23 21 29 29 C 1.47087 * 108.28658 * 333.53015 * 20 17 16 30 30 H 1.08999 * 109.46682 * 263.68304 * 1 2 3 31 31 H 1.08994 * 109.47343 * 23.68119 * 1 2 3 32 32 H 1.08996 * 109.47090 * 143.68829 * 1 2 3 33 33 H 1.07993 * 119.92735 * 0.02562 * 3 2 1 34 34 H 1.08005 * 119.85306 * 179.76543 * 4 3 2 35 35 H 1.07993 * 119.93050 * 179.97438 * 5 4 3 36 36 H 1.07998 * 120.07867 * 180.02562 * 6 5 4 37 37 H 0.96993 * 120.00571 * 359.97438 * 10 8 7 38 38 H 1.09008 * 109.56973 * 55.84774 * 13 11 10 39 39 H 1.09000 * 110.09230 * 295.13520 * 13 11 10 40 40 H 1.08990 * 111.23700 * 192.01810 * 16 14 13 41 41 H 1.09003 * 111.23677 * 316.47267 * 16 14 13 42 42 H 1.08993 * 109.52800 * 64.75681 * 19 11 10 43 43 H 1.09000 * 109.53138 * 304.52879 * 19 11 10 44 44 H 0.96996 * 119.99777 * 180.02562 * 24 23 21 45 45 H 1.08996 * 109.97402 * 241.74794 * 29 20 17 46 46 H 1.08999 * 109.97376 * 120.46428 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1957 -0.0053 5 6 4.2813 0.0017 -0.0054 6 6 3.6023 -1.1990 0.0003 7 6 2.2063 -1.2077 0.0058 8 6 1.4719 -2.4909 0.0113 9 8 0.2624 -2.4983 0.1304 10 7 2.1438 -3.6523 -0.1157 11 6 1.4160 -4.9238 -0.1108 12 1 0.4499 -4.7883 -0.5969 13 6 2.2218 -5.9926 -0.9025 14 6 1.4892 -7.3411 -0.7779 15 1 1.8818 -8.1028 -1.4515 16 6 1.5702 -7.7482 0.7200 17 6 0.5366 -6.7660 1.3323 18 1 0.2094 -7.0713 2.3262 19 6 1.1967 -5.3760 1.3342 20 7 -0.5712 -6.7471 0.3542 21 6 -1.8824 -6.4673 0.6327 22 1 -2.1817 -6.2331 1.6436 23 6 -2.8270 -6.4846 -0.3844 24 7 -2.4623 -6.7705 -1.6163 25 14 -4.6155 -6.1022 -0.0046 26 1 -4.7199 -4.7321 0.5587 27 1 -5.4155 -6.1859 -1.2529 28 1 -5.1328 -7.0839 0.9822 29 6 -0.0237 -7.0806 -0.9696 30 1 -0.3633 -0.1131 1.0214 31 1 -0.3634 0.9411 -0.4127 32 1 -0.3633 -0.8281 -0.6085 33 1 1.6585 2.1293 0.0004 34 1 4.1183 2.1331 -0.0091 35 1 5.3612 0.0099 -0.0100 36 1 4.1493 -2.1302 0.0007 37 1 3.1090 -3.6464 -0.2111 38 1 3.2234 -6.0808 -0.4814 39 1 2.2887 -5.7090 -1.9528 40 1 1.2641 -8.7842 0.8646 41 1 2.5677 -7.5735 1.1232 42 1 0.5470 -4.6647 1.8440 43 1 2.1560 -5.4289 1.8491 44 1 -3.1223 -6.7823 -2.3271 45 1 -0.1741 -6.2469 -1.6555 46 1 -0.5093 -7.9756 -1.3586 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047016743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:50 Heat of formation + Delta-G solvation = 20.496681 kcal Electronic energy + Delta-G solvation = -27005.373838 eV Core-core repulsion = 23474.373062 eV Total energy + Delta-G solvation = -3531.000777 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.37155 -39.35228 -37.87925 -34.65615 -32.94203 -32.46813 -31.44569 -30.62482 -29.38921 -28.16377 -26.86511 -25.27485 -23.83576 -23.07958 -22.13140 -21.04794 -20.14023 -19.39089 -18.70636 -17.51536 -16.89331 -16.03702 -15.74045 -15.19540 -14.99447 -14.60085 -14.39999 -14.33781 -13.73320 -13.44379 -13.24090 -13.14744 -12.82914 -12.68725 -12.08473 -12.04577 -11.88304 -11.81069 -11.73663 -11.69281 -11.49279 -11.21305 -11.15199 -10.68919 -10.62058 -10.45566 -9.95655 -9.81172 -9.70059 -9.60105 -9.32496 -9.16804 -9.07783 -8.82519 -8.50550 -8.46107 -6.73825 -5.60035 -2.92187 0.84567 1.23476 3.06827 3.46920 3.50045 3.54200 3.55876 3.87166 4.60592 4.66231 4.73032 4.76418 4.95348 5.18524 5.22601 5.27803 5.33060 5.46862 5.57047 5.61524 5.67731 5.76749 5.83266 5.90536 5.94211 5.96582 6.07794 6.10222 6.13041 6.16209 6.17316 6.25993 6.27511 6.33066 6.58195 6.60203 6.66076 6.73746 6.80984 6.92001 6.94736 7.02062 7.12333 7.65563 7.67100 7.87234 7.92216 8.35279 8.61015 9.32925 9.93333 10.59354 11.51964 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014380 B = 0.004382 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.691231 B = 6387.880746 C = 7806.952102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.022 4.022 3 C -0.134 4.134 4 C -0.097 4.097 5 C -0.139 4.139 6 C -0.085 4.085 7 C -0.133 4.133 8 C 0.547 3.453 9 O -0.513 6.513 10 N -0.723 5.723 11 C 0.146 3.854 12 H 0.114 0.886 13 C -0.111 4.111 14 C -0.119 4.119 15 H 0.080 0.920 16 C -0.129 4.129 17 C 0.158 3.842 18 H 0.064 0.936 19 C -0.135 4.135 20 N -0.595 5.595 21 C -0.221 4.221 22 H 0.075 0.925 23 C -0.006 4.006 24 N -0.924 5.924 25 Si 0.908 3.092 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.287 1.287 29 C 0.182 3.818 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.388 0.612 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.043 0.957 44 H 0.251 0.749 45 H 0.046 0.954 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.303 10.573 2.151 19.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.023 4.023 3 C -0.152 4.152 4 C -0.115 4.115 5 C -0.157 4.157 6 C -0.103 4.103 7 C -0.136 4.136 8 C 0.334 3.666 9 O -0.389 6.389 10 N -0.373 5.373 11 C 0.043 3.957 12 H 0.132 0.868 13 C -0.149 4.149 14 C -0.139 4.139 15 H 0.099 0.901 16 C -0.167 4.167 17 C 0.049 3.951 18 H 0.082 0.918 19 C -0.176 4.176 20 N -0.319 5.319 21 C -0.349 4.349 22 H 0.093 0.907 23 C -0.202 4.202 24 N -0.572 5.572 25 Si 0.739 3.261 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.214 1.214 29 C 0.057 3.943 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.222 0.778 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.162 10.560 2.091 18.595 hybrid contribution -0.270 0.353 0.118 0.460 sum 14.892 10.913 2.209 18.595 Atomic orbital electron populations 1.21120 0.89838 1.03107 1.03959 1.20132 0.97089 0.91486 0.93618 1.21070 0.94251 0.97518 1.02321 1.21295 0.94266 0.98163 0.97795 1.21034 0.99957 0.92269 1.02404 1.21300 0.93045 0.98464 0.97514 1.20012 0.93597 0.93762 1.06203 1.18241 0.87378 0.83572 0.77451 1.90825 1.13349 1.86778 1.47948 1.46120 1.10246 1.06518 1.74447 1.21642 0.97153 0.80144 0.96728 0.86803 1.22378 0.97660 0.95486 0.99346 1.22838 0.99587 0.95021 0.96456 0.90133 1.22998 0.98220 0.99446 0.96054 1.21484 0.88207 0.91473 0.93937 0.91832 1.22584 0.99026 1.00385 0.95598 1.44591 1.02997 1.81462 1.02833 1.18967 0.82048 1.39780 0.94124 0.90684 1.24718 0.97945 1.02008 0.95497 1.69928 1.32473 1.55340 0.99411 0.86244 0.84909 0.78217 0.76713 1.21162 1.21735 1.21359 1.21279 0.85549 0.99786 0.87671 0.90542 0.92648 0.88204 0.85560 0.85853 0.85705 0.85745 0.77786 0.92857 0.92094 0.91902 0.92279 0.92209 0.93825 0.93897 0.93639 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 8.73 36.01 0.31 -1.48 16 2 C -0.02 -0.30 5.91 -104.22 -0.62 -0.92 16 3 C -0.13 -1.44 9.66 -39.64 -0.38 -1.83 16 4 C -0.10 -0.90 10.04 -39.49 -0.40 -1.29 16 5 C -0.14 -1.29 10.03 -39.64 -0.40 -1.69 16 6 C -0.08 -0.92 9.53 -39.18 -0.37 -1.30 16 7 C -0.13 -1.88 5.87 -104.96 -0.62 -2.50 16 8 C 0.55 9.54 7.66 -12.33 -0.09 9.44 16 9 O -0.51 -11.19 13.00 5.33 0.07 -11.12 16 10 N -0.72 -11.24 5.03 -53.46 -0.27 -11.51 16 11 C 0.15 2.71 2.13 -66.60 -0.14 2.57 16 12 H 0.11 2.77 5.44 -51.93 -0.28 2.48 16 13 C -0.11 -1.76 5.18 -24.89 -0.13 -1.89 16 14 C -0.12 -2.15 4.27 -87.93 -0.38 -2.52 16 15 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 16 C -0.13 -2.21 6.17 -24.29 -0.15 -2.36 16 17 C 0.16 3.23 4.25 -65.61 -0.28 2.95 16 18 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 19 C -0.13 -2.55 5.30 -26.28 -0.14 -2.69 16 20 N -0.59 -15.03 2.46 -161.36 -0.40 -15.43 16 21 C -0.22 -6.28 10.29 -15.06 -0.16 -6.44 16 22 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 23 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 24 N -0.92 -27.64 10.35 55.49 0.57 -27.07 16 25 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 26 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 29 C 0.18 4.35 4.11 -2.82 -0.01 4.34 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.05 0.65 8.04 -51.93 -0.42 0.23 16 32 H 0.10 1.75 5.86 -51.93 -0.30 1.45 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.12 1.07 6.46 -52.49 -0.34 0.73 16 37 H 0.39 4.61 6.71 -40.82 -0.27 4.33 16 38 H 0.05 0.70 7.97 -51.92 -0.41 0.29 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.06 0.86 7.72 -51.93 -0.40 0.46 16 42 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.04 0.70 7.99 -51.93 -0.42 0.29 16 44 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.05 1.22 6.23 -51.93 -0.32 0.90 16 46 H 0.04 1.19 7.40 -51.93 -0.38 0.81 16 LS Contribution 355.32 15.07 5.35 5.35 Total: -1.00 -32.90 355.32 -10.64 -43.54 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.90 Total: 6.00 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -4.04 Total: -7.86 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.09 Total: -54.00 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.07 Total: -11.12 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.90 -10.64 -43.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047016743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.037 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds