Wall clock time and date at job start Tue Mar 31 2020 10:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37977 * 120.07427 * 2 1 4 4 C 1.38338 * 120.14249 * 180.25331 * 3 2 1 5 5 C 1.38378 * 120.29535 * 359.75005 * 4 3 2 6 6 C 1.37939 * 120.14600 * 359.97341 * 5 4 3 7 7 C 1.39559 * 120.07007 * 179.72650 * 2 1 3 8 8 C 1.47848 * 120.14767 * 0.02562 * 7 2 1 9 9 O 1.21544 * 119.99740 * 353.48052 * 8 7 2 10 10 N 1.34773 * 119.99717 * 173.47867 * 8 7 2 11 11 C 1.46499 * 119.99523 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.32706 * 34.64174 * 11 10 8 13 13 C 1.55520 * 109.71739 * 153.53855 * 11 10 8 14 14 C 1.53967 * 108.31138 * 175.33650 * 13 11 10 15 15 H 1.09001 * 112.99450 * 169.32386 * 14 13 11 16 16 C 1.55431 * 106.41661 * 294.13385 * 14 13 11 17 17 C 1.55178 * 100.35240 * 74.24144 * 16 14 13 18 18 H 1.08999 * 112.48555 * 162.67195 * 17 16 14 19 19 C 1.52988 * 109.32444 * 274.99702 * 11 10 8 20 20 N 1.47788 * 104.25366 * 40.55342 * 17 16 14 21 21 C 1.36937 * 125.85769 * 153.52722 * 20 17 16 22 22 H 1.07999 * 120.00341 * 0.02562 * 21 20 17 23 23 C 1.38818 * 119.99982 * 180.02562 * 21 20 17 24 24 N 1.31618 * 119.99994 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99829 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47398 * 59.99888 * 25 23 21 27 27 H 1.48498 * 109.47171 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47025 * 299.99692 * 25 23 21 29 29 C 1.47087 * 108.28658 * 333.53015 * 20 17 16 30 30 H 1.08999 * 109.46682 * 263.68304 * 1 2 3 31 31 H 1.08994 * 109.47343 * 23.68119 * 1 2 3 32 32 H 1.08996 * 109.47090 * 143.68829 * 1 2 3 33 33 H 1.07993 * 119.92735 * 0.02562 * 3 2 1 34 34 H 1.08005 * 119.85306 * 179.76543 * 4 3 2 35 35 H 1.07993 * 119.93050 * 179.97438 * 5 4 3 36 36 H 1.07998 * 120.07867 * 180.02562 * 6 5 4 37 37 H 0.96993 * 120.00571 * 359.97438 * 10 8 7 38 38 H 1.09008 * 109.56973 * 55.84774 * 13 11 10 39 39 H 1.09000 * 110.09230 * 295.13520 * 13 11 10 40 40 H 1.08990 * 111.23700 * 192.01810 * 16 14 13 41 41 H 1.09003 * 111.23677 * 316.47267 * 16 14 13 42 42 H 1.08993 * 109.52800 * 64.75681 * 19 11 10 43 43 H 1.09000 * 109.53138 * 304.52879 * 19 11 10 44 44 H 0.96996 * 119.99777 * 180.02562 * 24 23 21 45 45 H 1.08996 * 109.97402 * 241.74794 * 29 20 17 46 46 H 1.08999 * 109.97376 * 120.46428 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1957 -0.0053 5 6 4.2813 0.0017 -0.0054 6 6 3.6023 -1.1990 0.0003 7 6 2.2063 -1.2077 0.0058 8 6 1.4719 -2.4909 0.0113 9 8 0.2624 -2.4983 0.1304 10 7 2.1438 -3.6523 -0.1157 11 6 1.4160 -4.9238 -0.1108 12 1 0.4499 -4.7883 -0.5969 13 6 2.2218 -5.9926 -0.9025 14 6 1.4892 -7.3411 -0.7779 15 1 1.8818 -8.1028 -1.4515 16 6 1.5702 -7.7482 0.7200 17 6 0.5366 -6.7660 1.3323 18 1 0.2094 -7.0713 2.3262 19 6 1.1967 -5.3760 1.3342 20 7 -0.5712 -6.7471 0.3542 21 6 -1.8824 -6.4673 0.6327 22 1 -2.1817 -6.2331 1.6436 23 6 -2.8270 -6.4846 -0.3844 24 7 -2.4623 -6.7705 -1.6163 25 14 -4.6155 -6.1022 -0.0046 26 1 -4.7199 -4.7321 0.5587 27 1 -5.4155 -6.1859 -1.2529 28 1 -5.1328 -7.0839 0.9822 29 6 -0.0237 -7.0806 -0.9696 30 1 -0.3633 -0.1131 1.0214 31 1 -0.3634 0.9411 -0.4127 32 1 -0.3633 -0.8281 -0.6085 33 1 1.6585 2.1293 0.0004 34 1 4.1183 2.1331 -0.0091 35 1 5.3612 0.0099 -0.0100 36 1 4.1493 -2.1302 0.0007 37 1 3.1090 -3.6464 -0.2111 38 1 3.2234 -6.0808 -0.4814 39 1 2.2887 -5.7090 -1.9528 40 1 1.2641 -8.7842 0.8646 41 1 2.5677 -7.5735 1.1232 42 1 0.5470 -4.6647 1.8440 43 1 2.1560 -5.4289 1.8491 44 1 -3.1223 -6.7823 -2.3271 45 1 -0.1741 -6.2469 -1.6555 46 1 -0.5093 -7.9756 -1.3586 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047016743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:49 Heat of formation + Delta-G solvation = -0.142669 kcal Electronic energy + Delta-G solvation = -27006.268828 eV Core-core repulsion = 23474.373062 eV Total energy + Delta-G solvation = -3531.895766 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.67084 -40.70673 -39.08458 -36.19105 -34.80156 -33.50312 -32.58797 -32.28387 -31.03904 -29.65783 -27.91438 -27.21605 -24.96566 -24.84251 -23.26770 -22.12524 -21.51895 -21.16067 -20.16983 -18.96220 -18.58533 -17.44145 -16.75556 -16.57579 -16.29021 -16.23863 -15.75861 -15.69813 -15.36016 -14.94958 -14.41622 -14.29565 -14.12437 -14.01788 -13.80334 -13.46603 -13.33849 -13.27259 -13.07783 -12.99799 -12.94702 -12.65376 -12.61406 -12.52885 -12.14861 -12.00125 -11.88458 -11.64029 -11.34601 -11.18031 -10.95648 -10.68251 -10.55661 -10.10145 -9.84851 -9.62941 -8.83093 -7.83325 -5.14972 -0.08697 0.41068 1.37631 1.43039 1.47473 1.93819 2.20216 2.48574 2.89003 3.34876 3.64253 3.71093 3.81534 3.85082 3.89171 3.94492 4.11180 4.17348 4.37051 4.40540 4.43795 4.50331 4.53195 4.61574 4.66986 4.71194 4.73659 4.78622 4.83067 4.83858 5.00284 5.09643 5.19637 5.23122 5.30931 5.34265 5.37187 5.40908 5.48620 5.49868 5.50751 5.63743 5.67268 5.75370 5.84512 5.99048 6.23394 6.64665 7.14291 7.35520 7.83048 8.46998 9.26565 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014380 B = 0.004382 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.691231 B = 6387.880746 C = 7806.952102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.050 4.050 3 C -0.136 4.136 4 C -0.086 4.086 5 C -0.131 4.131 6 C -0.081 4.081 7 C -0.160 4.160 8 C 0.538 3.462 9 O -0.574 6.574 10 N -0.706 5.706 11 C 0.153 3.847 12 H 0.044 0.956 13 C -0.098 4.098 14 C -0.108 4.108 15 H 0.110 0.890 16 C -0.110 4.110 17 C 0.141 3.859 18 H 0.061 0.939 19 C -0.122 4.122 20 N -0.614 5.614 21 C -0.230 4.230 22 H 0.070 0.930 23 C -0.065 4.065 24 N -0.949 5.949 25 Si 0.966 3.034 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.272 1.272 29 C 0.191 3.809 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.146 0.854 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.150 0.850 37 H 0.411 0.589 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.016 0.984 43 H 0.088 0.912 44 H 0.243 0.757 45 H 0.001 0.999 46 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.403 11.551 3.022 24.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.051 4.051 3 C -0.154 4.154 4 C -0.104 4.104 5 C -0.148 4.148 6 C -0.100 4.100 7 C -0.163 4.163 8 C 0.327 3.673 9 O -0.455 6.455 10 N -0.358 5.358 11 C 0.049 3.951 12 H 0.062 0.938 13 C -0.136 4.136 14 C -0.127 4.127 15 H 0.128 0.872 16 C -0.148 4.148 17 C 0.034 3.966 18 H 0.079 0.921 19 C -0.163 4.163 20 N -0.338 5.338 21 C -0.360 4.360 22 H 0.088 0.912 23 C -0.257 4.257 24 N -0.598 5.598 25 Si 0.795 3.205 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.198 1.198 29 C 0.066 3.934 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.164 0.836 34 H 0.178 0.822 35 H 0.181 0.819 36 H 0.168 0.832 37 H 0.249 0.751 38 H 0.125 0.875 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.126 0.874 42 H 0.035 0.965 43 H 0.106 0.894 44 H 0.052 0.948 45 H 0.019 0.981 46 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 20.338 11.527 2.989 23.568 hybrid contribution -1.809 0.167 -0.111 1.820 sum 18.529 11.694 2.878 22.099 Atomic orbital electron populations 1.20942 0.91725 1.02504 1.02252 1.20199 0.96233 0.92908 0.95727 1.21315 0.95440 0.96921 1.01741 1.21786 0.93483 0.99969 0.95155 1.21517 1.01847 0.91281 1.00186 1.21584 0.91299 1.00659 0.96448 1.19877 0.95151 0.91828 1.09457 1.18960 0.86952 0.85205 0.76138 1.90809 1.16216 1.87720 1.50731 1.45851 1.11180 1.05093 1.73682 1.21273 0.95362 0.82303 0.96193 0.93779 1.22324 0.99066 0.92690 0.99549 1.22792 0.94741 0.97200 0.97988 0.87215 1.22953 0.99190 0.98171 0.94502 1.21845 0.88006 0.93655 0.93139 0.92107 1.22410 0.99947 0.98033 0.95882 1.44830 1.03169 1.81132 1.04711 1.19276 0.84188 1.38637 0.93898 0.91208 1.25475 1.01719 1.02984 0.95567 1.70156 1.32951 1.56808 0.99925 0.85327 0.80711 0.77805 0.76620 1.21697 1.21728 1.19778 1.21013 0.90017 0.96020 0.86384 0.92246 0.90322 0.92328 0.83634 0.82155 0.81863 0.83250 0.75050 0.87533 0.91748 0.91880 0.87371 0.96472 0.89373 0.94784 0.98054 0.97918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.74 8.73 71.24 0.62 -3.12 16 2 C -0.05 -1.37 5.91 -19.61 -0.12 -1.49 16 3 C -0.14 -2.64 9.66 22.23 0.21 -2.43 16 4 C -0.09 -1.20 10.04 22.33 0.22 -0.97 16 5 C -0.13 -1.77 10.03 22.23 0.22 -1.54 16 6 C -0.08 -1.51 9.53 22.53 0.21 -1.30 16 7 C -0.16 -4.52 5.87 -20.09 -0.12 -4.64 16 8 C 0.54 19.76 7.66 86.79 0.66 20.43 16 9 O -0.57 -27.84 13.00 -3.86 -0.05 -27.89 16 10 N -0.71 -21.63 5.03 -441.32 -2.22 -23.85 16 11 C 0.15 5.73 2.13 45.86 0.10 5.83 16 12 H 0.04 2.32 5.44 -2.39 -0.01 2.31 16 13 C -0.10 -2.86 5.18 31.79 0.16 -2.69 16 14 C -0.11 -3.67 4.27 -9.05 -0.04 -3.71 16 15 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 16 C -0.11 -3.42 6.17 32.18 0.20 -3.23 16 17 C 0.14 5.75 4.25 45.79 0.19 5.95 16 18 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 19 C -0.12 -4.58 5.30 30.89 0.16 -4.42 16 20 N -0.61 -32.74 2.46 -664.44 -1.64 -34.38 16 21 C -0.23 -13.97 10.29 84.04 0.87 -13.11 16 22 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 23 C -0.06 -3.99 5.49 84.86 0.47 -3.53 16 24 N -0.95 -60.92 10.35 21.65 0.22 -60.69 16 25 Si 0.97 50.29 29.55 68.60 2.03 52.31 16 26 H -0.29 -15.17 7.11 99.48 0.71 -14.46 16 27 H -0.29 -15.02 7.11 99.48 0.71 -14.32 16 28 H -0.27 -13.37 7.11 99.48 0.71 -12.66 16 29 C 0.19 9.62 4.11 86.85 0.36 9.98 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.08 1.97 8.04 -2.39 -0.02 1.95 16 32 H 0.06 2.34 5.86 -2.39 -0.01 2.33 16 33 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 34 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 35 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 36 H 0.15 1.89 6.46 -2.91 -0.02 1.87 16 37 H 0.41 8.48 6.71 -92.71 -0.62 7.86 16 38 H 0.11 2.08 7.97 -2.38 -0.02 2.06 16 39 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.11 2.41 7.72 -2.39 -0.02 2.39 16 42 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.09 2.53 7.99 -2.39 -0.02 2.51 16 44 H 0.24 15.28 8.31 -92.71 -0.77 14.51 16 45 H 0.00 0.08 6.23 -2.39 -0.01 0.06 16 46 H 0.00 0.15 7.40 -2.39 -0.02 0.13 16 Total: -1.00 -84.55 355.32 3.11 -81.45 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.36 Total: 17.03 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 4.40 Total: -3.98 kcal Atomic # 7 Polarization: -115.29 SS G_CDS: -3.63 Total: -118.92 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.05 Total: -27.89 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 2.03 Total: 52.31 kcal Total: -84.55 3.11 -81.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047016743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.305 kcal (2) G-P(sol) polarization free energy of solvation -84.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds