Wall clock time and date at job start Tue Mar 31 2020 10:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37979 * 120.07289 * 2 1 4 4 C 1.38345 * 120.14316 * 180.27649 * 3 2 1 5 5 C 1.38376 * 120.29431 * 359.70351 * 4 3 2 6 6 C 1.37943 * 120.14259 * 0.03936 * 5 4 3 7 7 C 1.39559 * 120.07448 * 179.74816 * 2 1 3 8 8 C 1.47840 * 120.14522 * 0.02562 * 7 2 1 9 9 O 1.21561 * 119.99755 * 39.27672 * 8 7 2 10 10 N 1.34778 * 120.00284 * 219.27332 * 8 7 2 11 11 C 1.46501 * 119.99719 * 174.77073 * 10 8 7 12 12 H 1.08995 * 109.18219 * 49.46509 * 11 10 8 13 13 C 1.53033 * 109.32630 * 289.90213 * 11 10 8 14 14 C 1.53965 * 108.82825 * 295.14717 * 13 11 10 15 15 H 1.09001 * 112.99648 * 168.08540 * 14 13 11 16 16 C 1.55420 * 106.41699 * 293.81730 * 14 13 11 17 17 C 1.55329 * 100.39801 * 73.38385 * 16 14 13 18 18 H 1.08993 * 113.15464 * 163.03442 * 17 16 14 19 19 C 1.52992 * 109.31929 * 169.01770 * 11 10 8 20 20 N 1.47835 * 104.15689 * 40.50818 * 17 16 14 21 21 C 1.36939 * 125.78156 * 153.59492 * 20 17 16 22 22 H 1.08000 * 119.99753 * 7.34180 * 21 20 17 23 23 C 1.38814 * 119.99842 * 187.33727 * 21 20 17 24 24 N 1.31615 * 119.99868 * 4.63412 * 23 21 20 25 25 Si 1.86795 * 119.99757 * 184.62791 * 23 21 20 26 26 H 1.48510 * 109.47083 * 90.00630 * 25 23 21 27 27 H 1.48501 * 109.47062 * 210.00187 * 25 23 21 28 28 H 1.48489 * 109.47628 * 330.00315 * 25 23 21 29 29 C 1.47074 * 108.35894 * 333.57688 * 20 17 16 30 30 H 1.08998 * 109.46480 * 271.45621 * 1 2 3 31 31 H 1.09002 * 109.46898 * 31.45301 * 1 2 3 32 32 H 1.09001 * 109.46614 * 151.45913 * 1 2 3 33 33 H 1.07997 * 119.92976 * 359.97438 * 3 2 1 34 34 H 1.07997 * 119.85155 * 179.71758 * 4 3 2 35 35 H 1.07996 * 119.93229 * 180.02562 * 5 4 3 36 36 H 1.07997 * 120.07200 * 179.97438 * 6 5 4 37 37 H 0.96994 * 119.99405 * 354.77606 * 10 8 7 38 38 H 1.09000 * 109.57446 * 54.94985 * 13 11 10 39 39 H 1.08995 * 109.57820 * 175.34045 * 13 11 10 40 40 H 1.09001 * 111.23579 * 191.15291 * 16 14 13 41 41 H 1.08999 * 111.23817 * 315.60499 * 16 14 13 42 42 H 1.09006 * 109.52647 * 185.06418 * 19 11 10 43 43 H 1.08995 * 109.53349 * 305.21691 * 19 11 10 44 44 H 0.97002 * 119.99969 * 179.97438 * 24 23 21 45 45 H 1.09004 * 109.97906 * 241.74429 * 29 20 17 46 46 H 1.09008 * 109.97844 * 120.46373 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5819 1.1958 -0.0058 5 6 4.2814 0.0018 -0.0054 6 6 3.6023 -1.1989 -0.0001 7 6 2.2064 -1.2077 0.0053 8 6 1.4721 -2.4908 0.0104 9 8 0.4632 -2.6164 -0.6560 10 7 1.9213 -3.5215 0.7537 11 6 1.1341 -4.7532 0.8496 12 1 0.8503 -5.0758 -0.1521 13 6 -0.1283 -4.4847 1.6720 14 6 0.2829 -4.1358 3.1141 15 1 -0.5391 -3.7327 3.7056 16 6 0.9185 -5.4216 3.7129 17 6 2.2799 -5.4357 2.9652 18 1 3.0193 -6.0853 3.4335 19 6 1.9786 -5.8434 1.5123 20 7 2.6993 -4.0182 2.9509 21 6 3.9899 -3.5657 2.8812 22 1 4.7978 -4.2620 2.7114 23 6 4.2596 -2.2120 3.0286 24 7 3.2876 -1.3759 3.3259 25 14 6.0022 -1.5773 2.8053 26 1 6.2171 -1.2111 1.3822 27 1 6.2064 -0.3805 3.6605 28 1 6.9683 -2.6352 3.1955 29 6 1.4944 -3.1779 3.0238 30 1 -0.3632 0.0261 1.0274 31 1 -0.3633 0.8767 -0.5363 32 1 -0.3632 -0.9028 -0.4910 33 1 1.6585 2.1294 -0.0004 34 1 4.1183 2.1331 -0.0104 35 1 5.3613 0.0100 -0.0095 36 1 4.1494 -2.1300 -0.0002 37 1 2.7658 -3.4475 1.2251 38 1 -0.6771 -3.6497 1.2365 39 1 -0.7573 -5.3749 1.6767 40 1 1.0607 -5.3271 4.7894 41 1 0.3264 -6.3042 3.4709 42 1 1.4294 -6.7850 1.5043 43 1 2.9141 -5.9623 0.9657 44 1 3.4762 -0.4300 3.4293 45 1 1.4156 -2.5612 2.1284 46 1 1.5352 -2.5445 3.9101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047016744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:54 Heat of formation + Delta-G solvation = 66.839476 kcal Electronic energy + Delta-G solvation = -29182.409711 eV Core-core repulsion = 25653.418509 eV Total energy + Delta-G solvation = -3528.991202 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.78891 -38.96162 -37.21270 -33.66435 -33.30776 -32.02414 -30.90188 -30.73780 -29.95990 -27.80001 -26.38973 -25.24506 -23.27252 -23.16028 -21.65863 -20.76511 -19.72497 -19.40745 -18.69903 -17.35076 -16.64904 -15.67020 -15.20624 -15.03930 -14.75854 -14.44367 -14.19598 -13.74495 -13.59804 -13.16449 -12.78616 -12.60611 -12.51706 -12.49220 -12.21710 -11.86778 -11.72857 -11.65373 -11.62529 -11.46651 -11.33908 -11.12300 -10.87785 -10.73811 -10.57943 -10.49237 -10.12077 -9.83124 -9.67917 -9.61036 -9.34751 -8.89406 -8.73114 -8.29778 -8.04760 -7.43058 -6.89112 -5.82670 -3.24302 1.64573 1.98169 3.25084 3.35868 3.37203 3.53153 4.13020 4.34773 4.52375 5.23477 5.25808 5.29420 5.33329 5.42058 5.48551 5.52585 5.61036 5.65325 5.82000 5.83884 5.92744 5.94471 6.05425 6.11430 6.14614 6.17645 6.22882 6.28331 6.29961 6.42083 6.45603 6.51956 6.61101 6.71018 6.75359 6.82609 6.89300 6.91987 6.94547 7.02861 7.16337 7.50871 7.51346 7.54505 7.65924 7.81992 8.14974 8.69540 9.06479 9.28020 9.65344 10.34018 11.21028 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012532 B = 0.008693 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.760102 B = 3220.077352 C = 4630.218825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 C -0.135 4.135 4 C -0.103 4.103 5 C -0.135 4.135 6 C -0.053 4.053 7 C -0.104 4.104 8 C 0.548 3.452 9 O -0.571 6.571 10 N -0.685 5.685 11 C 0.159 3.841 12 H 0.061 0.939 13 C -0.122 4.122 14 C -0.121 4.121 15 H 0.074 0.926 16 C -0.126 4.126 17 C 0.150 3.850 18 H 0.066 0.934 19 C -0.141 4.141 20 N -0.593 5.593 21 C -0.271 4.271 22 H 0.078 0.922 23 C 0.017 3.983 24 N -0.886 5.886 25 Si 0.889 3.111 26 H -0.274 1.274 27 H -0.290 1.290 28 H -0.284 1.284 29 C 0.145 3.855 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.440 0.560 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.256 0.744 45 H 0.073 0.927 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.704 -1.275 -4.071 5.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.031 4.031 3 C -0.153 4.153 4 C -0.122 4.122 5 C -0.153 4.153 6 C -0.072 4.072 7 C -0.107 4.107 8 C 0.335 3.665 9 O -0.454 6.454 10 N -0.351 5.351 11 C 0.053 3.947 12 H 0.079 0.921 13 C -0.160 4.160 14 C -0.140 4.140 15 H 0.093 0.907 16 C -0.164 4.164 17 C 0.042 3.958 18 H 0.084 0.916 19 C -0.181 4.181 20 N -0.320 5.320 21 C -0.398 4.398 22 H 0.096 0.904 23 C -0.184 4.184 24 N -0.529 5.529 25 Si 0.718 3.282 26 H -0.200 1.200 27 H -0.216 1.216 28 H -0.210 1.210 29 C 0.020 3.980 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.297 0.703 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.206 -1.148 -4.432 5.589 hybrid contribution 1.456 0.485 0.493 1.612 sum -1.750 -0.663 -3.939 4.361 Atomic orbital electron populations 1.21183 0.91301 1.04458 1.02474 1.19760 0.96029 0.91644 0.95714 1.20797 0.94083 0.96984 1.03450 1.21085 0.94228 0.97605 0.99255 1.21013 0.99617 0.92529 1.02188 1.21096 0.92888 0.98202 0.94987 1.19607 0.93569 0.93131 1.04376 1.18363 0.84420 0.84383 0.79289 1.90549 1.26971 1.83468 1.44451 1.47740 1.27395 1.12761 1.47218 1.20613 0.91270 0.85149 0.97631 0.92066 1.22062 0.96877 1.01085 0.95998 1.22824 0.99072 0.97275 0.94825 0.90746 1.22969 0.97071 0.97014 0.99365 1.21654 0.93765 0.88240 0.92148 0.91558 1.22537 0.99272 0.96687 0.99654 1.44949 1.02579 0.99290 1.85198 1.19023 0.82904 0.91892 1.45981 0.90386 1.24793 0.96969 0.96181 1.00423 1.69945 1.29677 1.02922 1.50404 0.86569 0.84580 0.78590 0.78415 1.20010 1.21634 1.21017 1.22119 0.81480 0.91570 1.02784 0.91604 0.92524 0.87912 0.86495 0.86764 0.86477 0.86205 0.70339 0.91501 0.92434 0.92158 0.92255 0.91828 0.92111 0.93322 0.90974 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.62 36.01 0.35 -2.07 16 2 C -0.03 -0.58 5.91 -104.22 -0.62 -1.20 16 3 C -0.14 -2.30 9.70 -39.64 -0.38 -2.69 16 4 C -0.10 -1.73 10.04 -39.49 -0.40 -2.13 16 5 C -0.14 -2.49 8.98 -39.64 -0.36 -2.85 16 6 C -0.05 -1.07 8.10 -39.18 -0.32 -1.38 16 7 C -0.10 -2.16 5.56 -104.97 -0.58 -2.74 16 8 C 0.55 11.81 5.41 -12.33 -0.07 11.74 16 9 O -0.57 -12.82 13.17 5.31 0.07 -12.75 16 10 N -0.69 -14.25 2.72 -54.74 -0.15 -14.40 16 11 C 0.16 2.94 2.72 -67.92 -0.18 2.76 16 12 H 0.06 1.13 7.95 -51.93 -0.41 0.72 16 13 C -0.12 -2.17 5.17 -26.21 -0.14 -2.30 16 14 C -0.12 -2.26 4.33 -87.93 -0.38 -2.64 16 15 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 16 C -0.13 -2.15 6.18 -24.21 -0.15 -2.30 16 17 C 0.15 2.80 4.31 -65.50 -0.28 2.52 16 18 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 19 C -0.14 -2.38 5.42 -26.28 -0.14 -2.52 16 20 N -0.59 -13.23 1.76 -161.24 -0.28 -13.52 16 21 C -0.27 -6.54 8.49 -15.06 -0.13 -6.67 16 22 H 0.08 1.87 7.83 -52.49 -0.41 1.46 16 23 C 0.02 0.42 4.64 -17.43 -0.08 0.34 16 24 N -0.89 -22.73 10.46 55.49 0.58 -22.14 16 25 Si 0.89 19.74 28.43 -169.99 -4.83 14.91 16 26 H -0.27 -5.68 5.51 56.52 0.31 -5.37 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 29 C 0.14 3.26 3.95 -2.83 -0.01 3.25 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 32 H 0.10 1.98 5.08 -51.93 -0.26 1.72 16 33 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.12 2.02 6.93 -52.49 -0.36 1.66 16 36 H 0.12 2.45 7.73 -52.49 -0.41 2.04 16 37 H 0.44 9.66 3.11 -40.83 -0.13 9.53 16 38 H 0.07 1.30 7.03 -51.93 -0.36 0.94 16 39 H 0.06 0.89 7.97 -51.93 -0.41 0.47 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.87 7.75 -51.93 -0.40 0.47 16 42 H 0.06 0.90 8.00 -51.93 -0.42 0.49 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 45 H 0.07 1.72 3.68 -58.45 -0.22 1.51 16 46 H 0.05 1.33 6.88 -51.92 -0.36 0.97 16 LS Contribution 337.99 15.07 5.09 5.09 Total: -1.00 -26.51 337.99 -10.15 -36.66 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -6.76 Total: 17.04 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -3.87 Total: -10.89 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.15 Total: -50.06 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.07 Total: -12.75 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.83 Total: 14.91 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -26.51 -10.15 -36.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047016744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.504 kcal (2) G-P(sol) polarization free energy of solvation -26.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds