Wall clock time and date at job start Tue Mar 31 2020 10:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37979 * 120.07289 * 2 1 4 4 C 1.38345 * 120.14316 * 180.27649 * 3 2 1 5 5 C 1.38376 * 120.29431 * 359.70351 * 4 3 2 6 6 C 1.37943 * 120.14259 * 0.03936 * 5 4 3 7 7 C 1.39559 * 120.07448 * 179.74816 * 2 1 3 8 8 C 1.47840 * 120.14522 * 0.02562 * 7 2 1 9 9 O 1.21561 * 119.99755 * 39.27672 * 8 7 2 10 10 N 1.34778 * 120.00284 * 219.27332 * 8 7 2 11 11 C 1.46501 * 119.99719 * 174.77073 * 10 8 7 12 12 H 1.08995 * 109.18219 * 49.46509 * 11 10 8 13 13 C 1.53033 * 109.32630 * 289.90213 * 11 10 8 14 14 C 1.53965 * 108.82825 * 295.14717 * 13 11 10 15 15 H 1.09001 * 112.99648 * 168.08540 * 14 13 11 16 16 C 1.55420 * 106.41699 * 293.81730 * 14 13 11 17 17 C 1.55329 * 100.39801 * 73.38385 * 16 14 13 18 18 H 1.08993 * 113.15464 * 163.03442 * 17 16 14 19 19 C 1.52992 * 109.31929 * 169.01770 * 11 10 8 20 20 N 1.47835 * 104.15689 * 40.50818 * 17 16 14 21 21 C 1.36939 * 125.78156 * 153.59492 * 20 17 16 22 22 H 1.08000 * 119.99753 * 7.34180 * 21 20 17 23 23 C 1.38814 * 119.99842 * 187.33727 * 21 20 17 24 24 N 1.31615 * 119.99868 * 4.63412 * 23 21 20 25 25 Si 1.86795 * 119.99757 * 184.62791 * 23 21 20 26 26 H 1.48510 * 109.47083 * 90.00630 * 25 23 21 27 27 H 1.48501 * 109.47062 * 210.00187 * 25 23 21 28 28 H 1.48489 * 109.47628 * 330.00315 * 25 23 21 29 29 C 1.47074 * 108.35894 * 333.57688 * 20 17 16 30 30 H 1.08998 * 109.46480 * 271.45621 * 1 2 3 31 31 H 1.09002 * 109.46898 * 31.45301 * 1 2 3 32 32 H 1.09001 * 109.46614 * 151.45913 * 1 2 3 33 33 H 1.07997 * 119.92976 * 359.97438 * 3 2 1 34 34 H 1.07997 * 119.85155 * 179.71758 * 4 3 2 35 35 H 1.07996 * 119.93229 * 180.02562 * 5 4 3 36 36 H 1.07997 * 120.07200 * 179.97438 * 6 5 4 37 37 H 0.96994 * 119.99405 * 354.77606 * 10 8 7 38 38 H 1.09000 * 109.57446 * 54.94985 * 13 11 10 39 39 H 1.08995 * 109.57820 * 175.34045 * 13 11 10 40 40 H 1.09001 * 111.23579 * 191.15291 * 16 14 13 41 41 H 1.08999 * 111.23817 * 315.60499 * 16 14 13 42 42 H 1.09006 * 109.52647 * 185.06418 * 19 11 10 43 43 H 1.08995 * 109.53349 * 305.21691 * 19 11 10 44 44 H 0.97002 * 119.99969 * 179.97438 * 24 23 21 45 45 H 1.09004 * 109.97906 * 241.74429 * 29 20 17 46 46 H 1.09008 * 109.97844 * 120.46373 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5819 1.1958 -0.0058 5 6 4.2814 0.0018 -0.0054 6 6 3.6023 -1.1989 -0.0001 7 6 2.2064 -1.2077 0.0053 8 6 1.4721 -2.4908 0.0104 9 8 0.4632 -2.6164 -0.6560 10 7 1.9213 -3.5215 0.7537 11 6 1.1341 -4.7532 0.8496 12 1 0.8503 -5.0758 -0.1521 13 6 -0.1283 -4.4847 1.6720 14 6 0.2829 -4.1358 3.1141 15 1 -0.5391 -3.7327 3.7056 16 6 0.9185 -5.4216 3.7129 17 6 2.2799 -5.4357 2.9652 18 1 3.0193 -6.0853 3.4335 19 6 1.9786 -5.8434 1.5123 20 7 2.6993 -4.0182 2.9509 21 6 3.9899 -3.5657 2.8812 22 1 4.7978 -4.2620 2.7114 23 6 4.2596 -2.2120 3.0286 24 7 3.2876 -1.3759 3.3259 25 14 6.0022 -1.5773 2.8053 26 1 6.2171 -1.2111 1.3822 27 1 6.2064 -0.3805 3.6605 28 1 6.9683 -2.6352 3.1955 29 6 1.4944 -3.1779 3.0238 30 1 -0.3632 0.0261 1.0274 31 1 -0.3633 0.8767 -0.5363 32 1 -0.3632 -0.9028 -0.4910 33 1 1.6585 2.1294 -0.0004 34 1 4.1183 2.1331 -0.0104 35 1 5.3613 0.0100 -0.0095 36 1 4.1494 -2.1300 -0.0002 37 1 2.7658 -3.4475 1.2251 38 1 -0.6771 -3.6497 1.2365 39 1 -0.7573 -5.3749 1.6767 40 1 1.0607 -5.3271 4.7894 41 1 0.3264 -6.3042 3.4709 42 1 1.4294 -6.7850 1.5043 43 1 2.9141 -5.9623 0.9657 44 1 3.4762 -0.4300 3.4293 45 1 1.4156 -2.5612 2.1284 46 1 1.5352 -2.5445 3.9101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047016744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:53 Heat of formation + Delta-G solvation = 55.095150 kcal Electronic energy + Delta-G solvation = -29182.918983 eV Core-core repulsion = 25653.418509 eV Total energy + Delta-G solvation = -3529.500474 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.34186 -40.43532 -38.76072 -35.40138 -34.87469 -33.45762 -32.49050 -32.28014 -31.50444 -29.34751 -27.81573 -26.96191 -24.82475 -24.71460 -23.10204 -22.20895 -21.34889 -20.96685 -20.22721 -18.98426 -18.29304 -17.19523 -16.80766 -16.51808 -16.36314 -16.09597 -15.68862 -15.27912 -15.22833 -14.60965 -14.25596 -14.10525 -14.05739 -13.93093 -13.85547 -13.36423 -13.28340 -13.16610 -13.07092 -12.97745 -12.82508 -12.59339 -12.53565 -12.32410 -12.19829 -11.95669 -11.82168 -11.57336 -11.29399 -11.07744 -10.85420 -10.62551 -10.40742 -9.74094 -9.49042 -9.04775 -8.68831 -7.70584 -5.12174 0.19111 0.54772 1.47319 1.52813 1.56029 1.96134 2.53241 2.65055 3.04338 3.43529 3.68315 3.82655 3.96547 3.98691 4.02444 4.08979 4.13086 4.20163 4.38300 4.46022 4.47174 4.49071 4.64378 4.67266 4.78639 4.79730 4.82066 4.88032 4.92106 4.98126 5.07494 5.12655 5.14985 5.26999 5.33368 5.37054 5.42503 5.49775 5.51776 5.60127 5.65018 5.72955 5.86271 5.94680 6.01146 6.12518 6.29996 7.04176 7.21095 7.62855 7.85128 8.52241 9.30474 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012532 B = 0.008693 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.760102 B = 3220.077352 C = 4630.218825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.050 4.050 3 C -0.133 4.133 4 C -0.098 4.098 5 C -0.146 4.146 6 C -0.067 4.067 7 C -0.129 4.129 8 C 0.542 3.458 9 O -0.590 6.590 10 N -0.689 5.689 11 C 0.149 3.851 12 H 0.062 0.938 13 C -0.112 4.112 14 C -0.119 4.119 15 H 0.081 0.919 16 C -0.112 4.112 17 C 0.139 3.861 18 H 0.071 0.929 19 C -0.130 4.130 20 N -0.604 5.604 21 C -0.274 4.274 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.902 5.902 25 Si 0.925 3.075 26 H -0.254 1.254 27 H -0.305 1.305 28 H -0.287 1.287 29 C 0.152 3.848 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.127 0.873 36 H 0.106 0.894 37 H 0.434 0.566 38 H 0.044 0.956 39 H 0.092 0.908 40 H 0.053 0.947 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.055 0.945 44 H 0.244 0.756 45 H 0.058 0.942 46 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.040 -1.776 -4.475 5.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.051 4.051 3 C -0.151 4.151 4 C -0.116 4.116 5 C -0.164 4.164 6 C -0.085 4.085 7 C -0.132 4.132 8 C 0.330 3.670 9 O -0.474 6.474 10 N -0.353 5.353 11 C 0.044 3.956 12 H 0.080 0.920 13 C -0.150 4.150 14 C -0.138 4.138 15 H 0.099 0.901 16 C -0.150 4.150 17 C 0.033 3.967 18 H 0.089 0.911 19 C -0.170 4.170 20 N -0.331 5.331 21 C -0.402 4.402 22 H 0.094 0.906 23 C -0.211 4.211 24 N -0.547 5.547 25 Si 0.755 3.245 26 H -0.179 1.179 27 H -0.233 1.233 28 H -0.213 1.213 29 C 0.028 3.972 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.168 0.832 34 H 0.169 0.831 35 H 0.145 0.855 36 H 0.124 0.876 37 H 0.290 0.710 38 H 0.062 0.938 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.116 0.884 42 H 0.121 0.879 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -3.543 -1.695 -4.848 6.240 hybrid contribution 1.579 0.641 0.636 1.819 sum -1.965 -1.055 -4.212 4.766 Atomic orbital electron populations 1.21100 0.90544 1.04845 1.02179 1.20111 0.96920 0.92036 0.96060 1.21195 0.94508 0.97460 1.01908 1.21506 0.94380 0.98428 0.97323 1.21226 1.00256 0.92649 1.02263 1.21047 0.92812 0.98451 0.96238 1.19745 0.94012 0.93490 1.05972 1.18600 0.84319 0.84956 0.79150 1.90520 1.27717 1.83892 1.45302 1.47831 1.27318 1.13429 1.46715 1.20877 0.91756 0.84872 0.98122 0.91953 1.21985 0.96690 1.01721 0.94624 1.22783 0.97721 0.97278 0.96023 0.90076 1.22928 0.96121 0.97369 0.98625 1.21927 0.94787 0.86267 0.93765 0.91071 1.22448 0.99321 0.97565 0.97637 1.45051 1.01878 1.01054 1.85137 1.19183 0.83879 0.91993 1.45140 0.90562 1.25177 0.98867 0.96341 1.00697 1.70141 1.30628 1.02194 1.51691 0.85992 0.82092 0.77340 0.79097 1.17881 1.23260 1.21301 1.21886 0.83450 0.92125 0.99771 0.92274 0.89473 0.89962 0.83201 0.83141 0.85489 0.87610 0.71016 0.93751 0.88931 0.92796 0.88410 0.87897 0.92648 0.94578 0.92491 0.97795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 9.62 71.24 0.69 -3.86 16 2 C -0.05 -1.92 5.91 -19.61 -0.12 -2.04 16 3 C -0.13 -4.29 9.70 22.23 0.22 -4.07 16 4 C -0.10 -3.09 10.04 22.33 0.22 -2.87 16 5 C -0.15 -5.26 8.98 22.23 0.20 -5.06 16 6 C -0.07 -2.72 8.10 22.53 0.18 -2.54 16 7 C -0.13 -5.49 5.56 -20.09 -0.11 -5.60 16 8 C 0.54 23.95 5.41 86.78 0.47 24.42 16 9 O -0.59 -27.12 13.17 -3.91 -0.05 -27.17 16 10 N -0.69 -29.02 2.72 -445.37 -1.21 -30.23 16 11 C 0.15 5.32 2.72 45.00 0.12 5.45 16 12 H 0.06 2.22 7.95 -2.39 -0.02 2.21 16 13 C -0.11 -3.79 5.17 30.93 0.16 -3.63 16 14 C -0.12 -4.32 4.33 -9.05 -0.04 -4.36 16 15 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 16 C -0.11 -3.53 6.18 32.23 0.20 -3.33 16 17 C 0.14 4.94 4.31 45.83 0.20 5.14 16 18 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 19 C -0.13 -4.05 5.42 30.89 0.17 -3.88 16 20 N -0.60 -27.02 1.76 -664.04 -1.17 -28.20 16 21 C -0.27 -13.40 8.49 84.03 0.71 -12.68 16 22 H 0.08 3.68 7.83 -2.91 -0.02 3.66 16 23 C -0.01 -0.60 4.64 84.86 0.39 -0.21 16 24 N -0.90 -47.63 10.46 21.65 0.23 -47.40 16 25 Si 0.93 40.71 28.43 68.60 1.95 42.66 16 26 H -0.25 -10.19 5.51 99.48 0.55 -9.64 16 27 H -0.31 -14.15 7.11 99.48 0.71 -13.44 16 28 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 29 C 0.15 7.00 3.95 86.85 0.34 7.34 16 30 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.09 2.42 8.10 -2.39 -0.02 2.40 16 32 H 0.08 3.23 5.08 -2.39 -0.01 3.22 16 33 H 0.15 3.77 8.06 -2.91 -0.02 3.74 16 34 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 35 H 0.13 4.21 6.93 -2.91 -0.02 4.19 16 36 H 0.11 4.48 7.73 -2.91 -0.02 4.45 16 37 H 0.43 19.44 3.11 -92.73 -0.29 19.15 16 38 H 0.04 1.71 7.03 -2.39 -0.02 1.69 16 39 H 0.09 2.49 7.97 -2.39 -0.02 2.47 16 40 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.10 2.37 7.75 -2.39 -0.02 2.35 16 42 H 0.10 2.43 8.00 -2.38 -0.02 2.41 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.24 13.11 8.31 -92.71 -0.77 12.33 16 45 H 0.06 2.82 3.68 -15.26 -0.06 2.76 16 46 H 0.00 0.21 6.88 -2.38 -0.02 0.19 16 Total: -1.00 -59.73 337.99 4.25 -55.48 By element: Atomic # 1 Polarization: 46.14 SS G_CDS: 0.50 Total: 46.64 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: 4.01 Total: -11.78 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -2.16 Total: -105.83 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.05 Total: -27.17 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 1.95 Total: 42.66 kcal Total: -59.73 4.25 -55.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047016744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.576 kcal (2) G-P(sol) polarization free energy of solvation -59.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds