Wall clock time and date at job start Tue Mar 31 2020 10:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38356 * 119.85312 * 2 1 4 4 C 1.37961 * 120.14322 * 179.72092 * 3 2 1 5 5 C 1.39575 * 119.85122 * 0.51696 * 4 3 2 6 6 C 1.47849 * 120.14346 * 179.76882 * 5 4 3 7 7 O 1.21550 * 119.99763 * 185.17923 * 6 5 4 8 8 N 1.34779 * 119.99968 * 5.17969 * 6 5 4 9 9 C 1.46494 * 119.99839 * 184.62647 * 8 6 5 10 10 H 1.08995 * 109.32652 * 52.69204 * 9 8 6 11 11 C 1.53031 * 109.32441 * 293.04542 * 9 8 6 12 12 C 1.53599 * 109.02699 * 295.29718 * 11 9 8 13 13 H 1.09002 * 113.73261 * 168.48221 * 12 11 9 14 14 C 1.55426 * 106.33427 * 293.73236 * 12 11 9 15 15 C 1.55166 * 100.35283 * 73.35509 * 14 12 11 16 16 H 1.09000 * 113.04865 * 162.98607 * 15 14 12 17 17 C 1.52996 * 109.32361 * 172.33570 * 9 8 6 18 18 N 1.47792 * 104.25596 * 40.55332 * 15 14 12 19 19 C 1.36933 * 125.86110 * 153.51818 * 18 15 14 20 20 H 1.07998 * 119.99593 * 20.02038 * 19 18 15 21 21 C 1.38815 * 120.00425 * 200.02630 * 19 18 15 22 22 N 1.31622 * 119.99455 * 3.58627 * 21 19 18 23 23 Si 1.86797 * 120.00269 * 183.58986 * 21 19 18 24 24 H 1.48502 * 109.47155 * 4.80002 * 23 21 19 25 25 H 1.48499 * 109.46755 * 124.79948 * 23 21 19 26 26 H 1.48498 * 109.47064 * 244.80073 * 23 21 19 27 27 C 1.47079 * 108.28577 * 333.53333 * 18 15 14 28 28 C 1.39576 * 119.71221 * 359.76102 * 5 4 3 29 29 C 1.37951 * 119.85542 * 359.97438 * 28 5 4 30 30 H 1.08995 * 109.47352 * 269.72619 * 1 2 3 31 31 H 1.09004 * 109.46888 * 149.72467 * 1 2 3 32 32 H 1.08999 * 109.46707 * 29.73428 * 1 2 3 33 33 H 1.08002 * 119.92757 * 359.97438 * 3 2 1 34 34 H 1.07998 * 120.07493 * 180.27528 * 4 3 2 35 35 H 0.97004 * 119.99896 * 4.62653 * 8 6 5 36 36 H 1.08991 * 109.57958 * 54.95132 * 11 9 8 37 37 H 1.09005 * 109.57913 * 175.34625 * 11 9 8 38 38 H 1.08995 * 111.23152 * 315.58157 * 14 12 11 39 39 H 1.08993 * 111.23647 * 191.13303 * 14 12 11 40 40 H 1.09001 * 109.52899 * 185.06271 * 17 9 8 41 41 H 1.09002 * 109.52647 * 305.28456 * 17 9 8 42 42 H 0.97000 * 119.99518 * 179.97438 * 22 21 19 43 43 H 1.09000 * 109.97583 * 120.45989 * 27 18 15 44 44 H 1.08996 * 109.98053 * 241.70279 * 27 18 15 45 45 H 1.08004 * 120.07173 * 180.02562 * 28 5 4 46 46 H 1.07996 * 119.93299 * 180.02562 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5753 1.2070 0.0058 5 6 4.2762 0.0000 0.0008 6 6 5.7547 -0.0001 0.0018 7 8 6.3624 -1.0480 -0.0976 8 7 6.4285 1.1619 0.1129 9 6 7.8899 1.1736 0.0123 10 1 8.1924 0.6690 -0.9053 11 6 8.4863 0.4386 1.2147 12 6 8.1474 1.2161 2.4953 13 1 8.3599 0.6657 3.4119 14 6 8.9108 2.5667 2.4016 15 6 8.0605 3.2935 1.3262 16 1 8.2302 4.3699 1.3037 17 6 8.3836 2.6214 -0.0198 18 7 6.6653 2.9492 1.6715 19 6 5.5581 3.7005 1.3805 20 1 5.6004 4.4441 0.5984 21 6 4.3814 3.5066 2.0909 22 7 4.3496 2.6509 3.0905 23 14 2.8430 4.4599 1.6281 24 1 3.1070 5.2632 0.4073 25 1 1.7325 3.5098 1.3649 26 1 2.4667 5.3644 2.7441 27 6 6.6701 1.6611 2.3815 28 6 3.5753 -1.2070 -0.0051 29 6 2.1958 -1.2001 -0.0053 30 1 -0.3634 -0.0049 1.0276 31 1 -0.3633 -0.8875 -0.5181 32 1 -0.3633 0.8924 -0.5097 33 1 1.6521 2.1332 -0.0004 34 1 4.1118 2.1443 0.0103 35 1 5.9457 1.9904 0.2596 36 1 8.0620 -0.5634 1.2775 37 1 9.5685 0.3726 1.1026 38 1 9.9353 2.4182 2.0607 39 1 8.8864 3.1007 3.3514 40 1 9.4610 2.6354 -0.1849 41 1 7.8833 3.1591 -0.8252 42 1 3.5274 2.5157 3.5871 43 1 6.2401 1.7825 3.3758 44 1 6.1005 0.9227 1.8174 45 1 4.1117 -2.1444 -0.0086 46 1 1.6522 -2.1332 -0.0094 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047188118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:11 Heat of formation + Delta-G solvation = 60.835432 kcal Electronic energy + Delta-G solvation = -28637.466752 eV Core-core repulsion = 25108.215195 eV Total energy + Delta-G solvation = -3529.251557 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.80568 -38.94150 -37.38792 -33.73813 -33.30703 -32.30506 -30.75882 -30.53905 -30.25945 -28.07508 -26.69673 -25.25838 -23.19561 -22.51115 -22.09509 -21.13408 -19.78639 -19.37799 -18.66495 -17.50154 -16.71270 -15.73482 -15.22889 -14.78306 -14.67524 -14.46219 -14.20345 -14.02577 -13.62297 -13.46454 -13.12148 -12.78855 -12.56800 -12.44080 -12.24376 -12.04151 -11.86335 -11.68305 -11.61594 -11.49755 -11.42682 -11.18920 -10.88474 -10.82412 -10.62183 -10.53374 -10.09110 -9.89759 -9.71447 -9.59215 -9.38316 -8.96092 -8.79147 -8.44946 -8.24581 -7.45840 -6.85030 -5.86459 -3.38267 1.41257 1.90083 3.19269 3.29230 3.31392 3.53532 4.10346 4.27483 4.47936 5.11548 5.17391 5.20921 5.25821 5.32977 5.43090 5.49871 5.56776 5.63397 5.67045 5.73551 5.85098 5.89514 5.96036 5.96531 6.00987 6.11087 6.15893 6.19936 6.31714 6.32186 6.40372 6.46264 6.50471 6.65819 6.74440 6.84158 6.85956 6.93149 6.96174 6.98890 7.01192 7.39336 7.45721 7.48227 7.62282 7.82175 8.17783 8.63910 9.00504 9.20154 9.59621 10.33719 11.12215 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013516 B = 0.007277 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.145000 B = 3846.780628 C = 5280.548112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.072 4.072 3 C -0.134 4.134 4 C -0.057 4.057 5 C -0.131 4.131 6 C 0.547 3.453 7 O -0.572 6.572 8 N -0.689 5.689 9 C 0.163 3.837 10 H 0.059 0.941 11 C -0.125 4.125 12 C -0.116 4.116 13 H 0.074 0.926 14 C -0.126 4.126 15 C 0.147 3.853 16 H 0.067 0.933 17 C -0.141 4.141 18 N -0.589 5.589 19 C -0.271 4.271 20 H 0.078 0.922 21 C 0.019 3.981 22 N -0.883 5.883 23 Si 0.881 3.119 24 H -0.275 1.275 25 H -0.273 1.273 26 H -0.288 1.288 27 C 0.131 3.869 28 C -0.064 4.064 29 C -0.141 4.141 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.122 0.878 34 H 0.144 0.856 35 H 0.434 0.566 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.256 0.744 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.128 0.872 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.236 -2.702 -5.213 5.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.072 4.072 3 C -0.152 4.152 4 C -0.075 4.075 5 C -0.134 4.134 6 C 0.334 3.666 7 O -0.454 6.454 8 N -0.354 5.354 9 C 0.057 3.943 10 H 0.077 0.923 11 C -0.164 4.164 12 C -0.135 4.135 13 H 0.093 0.907 14 C -0.165 4.165 15 C 0.040 3.960 16 H 0.085 0.915 17 C -0.182 4.182 18 N -0.316 5.316 19 C -0.399 4.399 20 H 0.095 0.905 21 C -0.183 4.183 22 N -0.525 5.525 23 Si 0.710 3.290 24 H -0.200 1.200 25 H -0.199 1.199 26 H -0.215 1.215 27 C 0.007 3.993 28 C -0.083 4.083 29 C -0.159 4.159 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.140 0.860 34 H 0.162 0.838 35 H 0.290 0.710 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.146 0.854 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.072 -3.321 -5.202 6.172 hybrid contribution -0.989 0.987 0.179 1.409 sum -1.061 -2.333 -5.022 5.639 Atomic orbital electron populations 1.20800 0.91651 1.02334 1.02230 1.20021 0.95772 0.93348 0.98086 1.21107 0.94400 0.97509 1.02218 1.21762 0.94335 0.98518 0.92894 1.19994 0.93467 0.94126 1.05790 1.18270 0.87129 0.84359 0.76830 1.90629 1.69960 1.32157 1.52667 1.47476 1.07264 1.12044 1.68638 1.20607 0.80841 0.95710 0.97125 0.92318 1.22019 0.99124 1.00178 0.95034 1.22670 0.99089 0.95344 0.96365 0.90745 1.22954 0.97210 0.97001 0.99291 1.21655 0.86518 0.96345 0.91493 0.91542 1.22538 0.99664 0.95219 1.00731 1.44858 0.99984 1.20161 1.66552 1.19053 0.88300 1.17806 1.14745 0.90450 1.25071 0.98543 0.98473 0.96185 1.69907 1.26558 1.35506 1.20553 0.86651 0.84097 0.80019 0.78276 1.19951 1.19944 1.21509 1.22225 0.90866 0.87295 0.98959 1.21149 0.93651 0.97586 0.95881 1.20827 0.93865 0.97180 1.04070 0.91218 0.91736 0.91737 0.86049 0.83831 0.71032 0.90742 0.92596 0.92347 0.92147 0.91743 0.92166 0.93284 0.91640 0.92324 0.85367 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 36.01 0.36 -1.05 16 2 C -0.07 -1.16 5.89 -104.53 -0.62 -1.78 16 3 C -0.13 -2.48 9.21 -39.64 -0.36 -2.85 16 4 C -0.06 -1.15 8.71 -39.18 -0.34 -1.50 16 5 C -0.13 -2.70 5.87 -104.97 -0.62 -3.31 16 6 C 0.55 11.92 5.86 -12.33 -0.07 11.85 16 7 O -0.57 -13.22 14.77 5.32 0.08 -13.14 16 8 N -0.69 -14.37 2.73 -54.74 -0.15 -14.52 16 9 C 0.16 3.03 2.78 -67.92 -0.19 2.85 16 10 H 0.06 1.07 8.13 -51.93 -0.42 0.65 16 11 C -0.13 -2.30 5.09 -26.40 -0.13 -2.43 16 12 C -0.12 -2.23 4.33 -88.12 -0.38 -2.61 16 13 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 14 C -0.13 -2.21 6.18 -24.30 -0.15 -2.36 16 15 C 0.15 2.79 4.29 -65.62 -0.28 2.51 16 16 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 17 C -0.14 -2.38 5.41 -26.28 -0.14 -2.53 16 18 N -0.59 -13.21 1.75 -161.37 -0.28 -13.49 16 19 C -0.27 -6.51 7.55 -15.06 -0.11 -6.62 16 20 H 0.08 1.83 7.83 -52.49 -0.41 1.41 16 21 C 0.02 0.46 4.03 -17.43 -0.07 0.39 16 22 N -0.88 -23.14 10.61 55.49 0.59 -22.55 16 23 Si 0.88 19.28 27.92 -169.99 -4.75 14.53 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 25 H -0.27 -5.73 5.49 56.52 0.31 -5.42 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 C 0.13 3.01 4.39 -2.82 -0.01 3.00 16 28 C -0.06 -1.17 9.59 -39.19 -0.38 -1.54 16 29 C -0.14 -2.26 9.68 -39.64 -0.38 -2.64 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 32 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 33 H 0.12 2.17 6.17 -52.49 -0.32 1.85 16 34 H 0.14 3.11 3.83 -52.49 -0.20 2.91 16 35 H 0.43 9.44 2.44 -40.82 -0.10 9.34 16 36 H 0.07 1.52 6.43 -51.93 -0.33 1.19 16 37 H 0.06 0.89 7.97 -51.93 -0.41 0.47 16 38 H 0.06 0.88 7.74 -51.93 -0.40 0.48 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 0.92 8.00 -51.93 -0.42 0.50 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 43 H 0.07 1.75 6.36 -51.93 -0.33 1.42 16 44 H 0.06 1.44 3.84 -58.32 -0.22 1.22 16 45 H 0.13 2.25 7.66 -52.48 -0.40 1.85 16 46 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 336.01 15.07 5.06 5.06 Total: -1.00 -27.15 336.01 -9.91 -37.07 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: -6.58 Total: 17.67 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -3.88 Total: -10.62 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.16 Total: -50.56 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.08 Total: -13.14 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.75 Total: 14.53 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.15 -9.91 -37.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047188118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.901 kcal (2) G-P(sol) polarization free energy of solvation -27.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds