Wall clock time and date at job start Tue Mar 31 2020 10:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38356 * 119.85312 * 2 1 4 4 C 1.37961 * 120.14322 * 179.72092 * 3 2 1 5 5 C 1.39575 * 119.85122 * 0.51696 * 4 3 2 6 6 C 1.47849 * 120.14346 * 179.76882 * 5 4 3 7 7 O 1.21550 * 119.99763 * 185.17923 * 6 5 4 8 8 N 1.34779 * 119.99968 * 5.17969 * 6 5 4 9 9 C 1.46494 * 119.99839 * 184.62647 * 8 6 5 10 10 H 1.08995 * 109.32652 * 52.69204 * 9 8 6 11 11 C 1.53031 * 109.32441 * 293.04542 * 9 8 6 12 12 C 1.53599 * 109.02699 * 295.29718 * 11 9 8 13 13 H 1.09002 * 113.73261 * 168.48221 * 12 11 9 14 14 C 1.55426 * 106.33427 * 293.73236 * 12 11 9 15 15 C 1.55166 * 100.35283 * 73.35509 * 14 12 11 16 16 H 1.09000 * 113.04865 * 162.98607 * 15 14 12 17 17 C 1.52996 * 109.32361 * 172.33570 * 9 8 6 18 18 N 1.47792 * 104.25596 * 40.55332 * 15 14 12 19 19 C 1.36933 * 125.86110 * 153.51818 * 18 15 14 20 20 H 1.07998 * 119.99593 * 20.02038 * 19 18 15 21 21 C 1.38815 * 120.00425 * 200.02630 * 19 18 15 22 22 N 1.31622 * 119.99455 * 3.58627 * 21 19 18 23 23 Si 1.86797 * 120.00269 * 183.58986 * 21 19 18 24 24 H 1.48502 * 109.47155 * 4.80002 * 23 21 19 25 25 H 1.48499 * 109.46755 * 124.79948 * 23 21 19 26 26 H 1.48498 * 109.47064 * 244.80073 * 23 21 19 27 27 C 1.47079 * 108.28577 * 333.53333 * 18 15 14 28 28 C 1.39576 * 119.71221 * 359.76102 * 5 4 3 29 29 C 1.37951 * 119.85542 * 359.97438 * 28 5 4 30 30 H 1.08995 * 109.47352 * 269.72619 * 1 2 3 31 31 H 1.09004 * 109.46888 * 149.72467 * 1 2 3 32 32 H 1.08999 * 109.46707 * 29.73428 * 1 2 3 33 33 H 1.08002 * 119.92757 * 359.97438 * 3 2 1 34 34 H 1.07998 * 120.07493 * 180.27528 * 4 3 2 35 35 H 0.97004 * 119.99896 * 4.62653 * 8 6 5 36 36 H 1.08991 * 109.57958 * 54.95132 * 11 9 8 37 37 H 1.09005 * 109.57913 * 175.34625 * 11 9 8 38 38 H 1.08995 * 111.23152 * 315.58157 * 14 12 11 39 39 H 1.08993 * 111.23647 * 191.13303 * 14 12 11 40 40 H 1.09001 * 109.52899 * 185.06271 * 17 9 8 41 41 H 1.09002 * 109.52647 * 305.28456 * 17 9 8 42 42 H 0.97000 * 119.99518 * 179.97438 * 22 21 19 43 43 H 1.09000 * 109.97583 * 120.45989 * 27 18 15 44 44 H 1.08996 * 109.98053 * 241.70279 * 27 18 15 45 45 H 1.08004 * 120.07173 * 180.02562 * 28 5 4 46 46 H 1.07996 * 119.93299 * 180.02562 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5753 1.2070 0.0058 5 6 4.2762 0.0000 0.0008 6 6 5.7547 -0.0001 0.0018 7 8 6.3624 -1.0480 -0.0976 8 7 6.4285 1.1619 0.1129 9 6 7.8899 1.1736 0.0123 10 1 8.1924 0.6690 -0.9053 11 6 8.4863 0.4386 1.2147 12 6 8.1474 1.2161 2.4953 13 1 8.3599 0.6657 3.4119 14 6 8.9108 2.5667 2.4016 15 6 8.0605 3.2935 1.3262 16 1 8.2302 4.3699 1.3037 17 6 8.3836 2.6214 -0.0198 18 7 6.6653 2.9492 1.6715 19 6 5.5581 3.7005 1.3805 20 1 5.6004 4.4441 0.5984 21 6 4.3814 3.5066 2.0909 22 7 4.3496 2.6509 3.0905 23 14 2.8430 4.4599 1.6281 24 1 3.1070 5.2632 0.4073 25 1 1.7325 3.5098 1.3649 26 1 2.4667 5.3644 2.7441 27 6 6.6701 1.6611 2.3815 28 6 3.5753 -1.2070 -0.0051 29 6 2.1958 -1.2001 -0.0053 30 1 -0.3634 -0.0049 1.0276 31 1 -0.3633 -0.8875 -0.5181 32 1 -0.3633 0.8924 -0.5097 33 1 1.6521 2.1332 -0.0004 34 1 4.1118 2.1443 0.0103 35 1 5.9457 1.9904 0.2596 36 1 8.0620 -0.5634 1.2775 37 1 9.5685 0.3726 1.1026 38 1 9.9353 2.4182 2.0607 39 1 8.8864 3.1007 3.3514 40 1 9.4610 2.6354 -0.1849 41 1 7.8833 3.1591 -0.8252 42 1 3.5274 2.5157 3.5871 43 1 6.2401 1.7825 3.3758 44 1 6.1005 0.9227 1.8174 45 1 4.1117 -2.1444 -0.0086 46 1 1.6522 -2.1332 -0.0094 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047188118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:10 Heat of formation + Delta-G solvation = 48.015186 kcal Electronic energy + Delta-G solvation = -28638.022680 eV Core-core repulsion = 25108.215195 eV Total energy + Delta-G solvation = -3529.807485 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.38509 -40.38878 -38.95426 -35.48291 -34.90317 -33.65978 -32.41999 -32.04105 -31.75215 -29.61311 -28.00236 -26.99480 -24.85784 -23.92586 -23.52385 -22.58426 -21.43523 -20.91970 -20.23053 -19.11740 -18.41571 -17.30510 -16.86779 -16.37243 -16.15634 -16.02140 -15.65447 -15.55690 -15.24393 -14.63281 -14.59984 -14.26282 -14.13022 -13.94214 -13.86861 -13.36998 -13.29279 -13.12601 -13.09969 -12.98645 -12.83444 -12.65053 -12.53670 -12.37215 -12.24641 -11.99131 -11.75612 -11.66479 -11.32344 -11.09824 -10.95805 -10.65688 -10.54292 -9.87380 -9.65667 -9.07811 -8.67877 -7.74799 -5.27356 -0.03122 0.48454 1.42147 1.48751 1.53982 1.99301 2.46865 2.59434 2.98940 3.34541 3.66560 3.81243 3.88848 3.93374 4.00441 4.07406 4.08000 4.16252 4.37057 4.42716 4.47418 4.47893 4.51159 4.67100 4.79076 4.80312 4.83459 4.85186 4.88064 4.92535 5.07232 5.10718 5.15110 5.20772 5.27339 5.34711 5.41613 5.43362 5.50124 5.53392 5.60946 5.62586 5.78412 5.90128 5.95170 6.03458 6.30346 6.97030 7.13733 7.54087 7.78633 8.50482 9.22576 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013516 B = 0.007277 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.145000 B = 3846.780628 C = 5280.548112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.065 4.065 3 C -0.150 4.150 4 C -0.069 4.069 5 C -0.161 4.161 6 C 0.539 3.461 7 O -0.595 6.595 8 N -0.691 5.691 9 C 0.151 3.849 10 H 0.064 0.936 11 C -0.115 4.115 12 C -0.115 4.115 13 H 0.078 0.922 14 C -0.112 4.112 15 C 0.137 3.863 16 H 0.072 0.928 17 C -0.129 4.129 18 N -0.599 5.599 19 C -0.269 4.269 20 H 0.079 0.921 21 C -0.015 4.015 22 N -0.911 5.911 23 Si 0.922 3.078 24 H -0.265 1.265 25 H -0.262 1.262 26 H -0.304 1.304 27 C 0.138 3.862 28 C -0.073 4.073 29 C -0.133 4.133 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.430 0.570 36 H 0.047 0.953 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.051 0.949 40 H 0.104 0.896 41 H 0.058 0.942 42 H 0.246 0.754 43 H 0.021 0.979 44 H 0.040 0.960 45 H 0.130 0.870 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.103 -2.880 -6.388 7.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.066 4.066 3 C -0.168 4.168 4 C -0.088 4.088 5 C -0.164 4.164 6 C 0.327 3.673 7 O -0.480 6.480 8 N -0.354 5.354 9 C 0.047 3.953 10 H 0.082 0.918 11 C -0.153 4.153 12 C -0.134 4.134 13 H 0.096 0.904 14 C -0.151 4.151 15 C 0.031 3.969 16 H 0.090 0.910 17 C -0.169 4.169 18 N -0.325 5.325 19 C -0.398 4.398 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.555 5.555 23 Si 0.750 3.250 24 H -0.189 1.189 25 H -0.187 1.187 26 H -0.232 1.232 27 C 0.013 3.987 28 C -0.092 4.092 29 C -0.151 4.151 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.284 0.716 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.070 0.930 40 H 0.122 0.878 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.039 0.961 44 H 0.058 0.942 45 H 0.148 0.852 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.092 -3.475 -6.406 7.288 hybrid contribution -1.044 1.039 0.531 1.566 sum -0.953 -2.436 -5.875 6.431 Atomic orbital electron populations 1.20898 0.88419 1.04273 1.03278 1.20489 0.98068 0.92383 0.95622 1.21263 0.93754 0.98835 1.02944 1.21610 0.95237 0.97648 0.94308 1.20098 0.93090 0.95223 1.08005 1.18567 0.87894 0.84315 0.76504 1.90587 1.70552 1.32720 1.54148 1.47565 1.08365 1.11514 1.67979 1.20888 0.79767 0.97178 0.97496 0.91801 1.21931 1.01001 0.98322 0.94086 1.22637 0.96762 0.96749 0.97265 0.90362 1.22911 0.98643 0.94968 0.98534 1.21926 0.84723 0.97157 0.93132 0.90986 1.22447 1.02010 0.93322 0.99095 1.44955 1.01293 1.19942 1.66345 1.19252 0.89128 1.17127 1.14245 0.90292 1.25497 1.00503 0.99096 0.96256 1.70120 1.26272 1.37236 1.21919 0.86006 0.82306 0.79053 0.77676 1.18916 1.18690 1.23170 1.21980 0.93130 0.87450 0.96163 1.21345 0.94980 0.96860 0.95978 1.21239 0.92897 0.98830 1.02098 0.90387 0.88932 0.90799 0.85791 0.85748 0.71590 0.93383 0.89056 0.88425 0.93014 0.87760 0.92352 0.94416 0.96133 0.94203 0.85182 0.82329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.40 10.01 71.24 0.71 -1.69 16 2 C -0.07 -1.99 5.89 -19.80 -0.12 -2.11 16 3 C -0.15 -5.50 9.21 22.23 0.20 -5.29 16 4 C -0.07 -2.90 8.71 22.53 0.20 -2.70 16 5 C -0.16 -6.85 5.87 -20.09 -0.12 -6.97 16 6 C 0.54 24.30 5.86 86.79 0.51 24.81 16 7 O -0.60 -28.35 14.77 -3.87 -0.06 -28.41 16 8 N -0.69 -29.37 2.73 -445.38 -1.22 -30.58 16 9 C 0.15 5.48 2.78 45.00 0.13 5.60 16 10 H 0.06 2.25 8.13 -2.39 -0.02 2.23 16 11 C -0.12 -4.06 5.09 30.81 0.16 -3.90 16 12 C -0.12 -4.36 4.33 -9.17 -0.04 -4.40 16 13 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 14 C -0.11 -3.67 6.18 32.17 0.20 -3.47 16 15 C 0.14 4.95 4.29 45.78 0.20 5.14 16 16 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 17 C -0.13 -4.02 5.41 30.89 0.17 -3.85 16 18 N -0.60 -27.10 1.75 -664.47 -1.16 -28.26 16 19 C -0.27 -13.15 7.55 84.03 0.63 -12.52 16 20 H 0.08 3.75 7.83 -2.91 -0.02 3.73 16 21 C -0.02 -0.76 4.03 84.86 0.34 -0.41 16 22 N -0.91 -49.84 10.61 21.65 0.23 -49.61 16 23 Si 0.92 40.17 27.92 68.60 1.92 42.09 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 25 H -0.26 -10.75 5.49 99.48 0.55 -10.21 16 26 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 27 C 0.14 6.53 4.39 86.85 0.38 6.91 16 28 C -0.07 -2.67 9.59 22.52 0.22 -2.45 16 29 C -0.13 -3.98 9.68 22.23 0.22 -3.77 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.09 1.49 8.08 -2.38 -0.02 1.47 16 32 H 0.07 1.46 8.08 -2.39 -0.02 1.44 16 33 H 0.12 4.37 6.17 -2.91 -0.02 4.35 16 34 H 0.12 5.60 3.83 -2.91 -0.01 5.59 16 35 H 0.43 19.16 2.44 -92.71 -0.23 18.94 16 36 H 0.05 1.96 6.43 -2.39 -0.02 1.94 16 37 H 0.09 2.57 7.97 -2.38 -0.02 2.55 16 38 H 0.10 2.46 7.74 -2.39 -0.02 2.44 16 39 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.10 2.46 8.00 -2.39 -0.02 2.45 16 41 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.25 13.43 8.31 -92.71 -0.77 12.66 16 43 H 0.02 1.16 6.36 -2.39 -0.02 1.14 16 44 H 0.04 2.06 3.84 -15.01 -0.06 2.00 16 45 H 0.13 4.62 7.66 -2.91 -0.02 4.60 16 46 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -62.26 336.01 4.25 -58.00 By element: Atomic # 1 Polarization: 47.27 SS G_CDS: 0.56 Total: 47.84 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 3.98 Total: -11.06 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -2.15 Total: -108.46 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.06 Total: -28.41 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 1.92 Total: 42.09 kcal Total: -62.26 4.25 -58.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047188118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.020 kcal (2) G-P(sol) polarization free energy of solvation -62.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds