Wall clock time and date at job start Tue Mar 31 2020 10:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37980 * 120.07043 * 2 1 4 4 C 1.38341 * 120.14080 * 179.97438 * 3 2 1 5 5 C 1.38382 * 120.29377 * 0.02562 * 4 3 2 6 6 C 1.37941 * 120.14308 * 359.75021 * 5 4 3 7 7 C 1.39555 * 120.07271 * 179.97438 * 2 1 3 8 8 C 1.47844 * 120.14379 * 359.97438 * 7 2 1 9 9 O 1.21547 * 120.00105 * 311.92868 * 8 7 2 10 10 N 1.34778 * 119.99788 * 131.93124 * 8 7 2 11 11 C 1.47859 * 122.22413 * 354.76826 * 10 8 7 12 12 C 1.52722 * 111.05438 * 232.47144 * 11 10 8 13 13 C 1.53876 * 111.52028 * 311.46305 * 12 11 10 14 14 C 1.51081 * 107.34581 * 56.93399 * 13 12 11 15 15 H 1.09000 * 108.73512 * 51.46910 * 14 13 12 16 16 C 1.45715 * 122.23021 * 174.75112 * 10 8 7 17 17 H 1.09002 * 111.64512 * 240.86689 * 16 10 8 18 18 C 1.53225 * 115.86522 * 10.03995 * 16 10 8 19 19 C 1.55471 * 101.27860 * 153.38368 * 18 16 10 20 20 N 1.45021 * 119.19318 * 176.73791 * 14 13 12 21 21 C 1.36931 * 126.56257 * 331.18688 * 20 14 13 22 22 H 1.07997 * 120.00537 * 359.97438 * 21 20 14 23 23 C 1.38817 * 119.99847 * 180.02562 * 21 20 14 24 24 N 1.31611 * 120.00121 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99883 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.46893 * 89.99775 * 25 23 21 27 27 H 1.48500 * 109.46811 * 209.99857 * 25 23 21 28 28 H 1.48501 * 109.47037 * 329.99614 * 25 23 21 29 29 H 1.09009 * 109.47019 * 274.12787 * 1 2 3 30 30 H 1.08997 * 109.47469 * 34.12386 * 1 2 3 31 31 H 1.09002 * 109.47444 * 154.13051 * 1 2 3 32 32 H 1.07996 * 119.93131 * 359.97075 * 3 2 1 33 33 H 1.07995 * 119.85117 * 179.97438 * 4 3 2 34 34 H 1.07992 * 119.92831 * 180.02562 * 5 4 3 35 35 H 1.07998 * 120.07128 * 180.27327 * 6 5 4 36 36 H 1.09002 * 109.16260 * 112.07007 * 11 10 8 37 37 H 1.08998 * 109.16040 * 352.87420 * 11 10 8 38 38 H 1.09002 * 109.07253 * 71.98816 * 12 11 10 39 39 H 1.09000 * 109.06938 * 191.00476 * 12 11 10 40 40 H 1.09005 * 109.87403 * 176.39276 * 13 12 11 41 41 H 1.09000 * 109.88349 * 297.46606 * 13 12 11 42 42 H 1.09007 * 111.56822 * 35.25020 * 18 16 10 43 43 H 1.09002 * 110.81230 * 271.18833 * 18 16 10 44 44 H 1.08998 * 109.96338 * 217.56601 * 19 18 16 45 45 H 1.08999 * 109.98937 * 96.33927 * 19 18 16 46 46 H 0.97002 * 120.00390 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5818 1.1958 0.0005 5 6 4.2813 0.0018 0.0005 6 6 3.6022 -1.1989 0.0052 7 6 2.2063 -1.2077 0.0005 8 6 1.4719 -2.4908 0.0017 9 8 0.5599 -2.6684 0.7853 10 7 1.8139 -3.4637 -0.8662 11 6 2.8371 -3.2615 -1.9142 12 6 2.2971 -3.6470 -3.2898 13 6 1.6130 -5.0250 -3.2617 14 6 0.5199 -4.9641 -2.2206 15 1 -0.1019 -4.0906 -2.4164 16 6 1.2001 -4.7849 -0.8338 17 1 1.9372 -5.5662 -0.6485 18 6 -0.0196 -4.9331 0.0817 19 6 -0.7833 -6.0944 -0.6149 20 7 -0.3416 -6.1153 -2.0313 21 6 -0.6827 -7.0434 -2.9785 22 1 -0.2987 -6.9550 -3.9840 23 6 -1.5230 -8.0972 -2.6466 24 7 -1.9915 -8.2047 -1.4214 25 14 -1.9890 -9.3630 -3.9391 26 1 -1.0014 -10.4718 -3.9246 27 1 -3.3409 -9.9002 -3.6409 28 1 -1.9951 -8.7230 -5.2791 29 1 -0.3633 0.0740 1.0251 30 1 -0.3634 0.8507 -0.5765 31 1 -0.3634 -0.9247 -0.4484 32 1 1.6584 2.1294 -0.0005 33 1 4.1182 2.1331 0.0001 34 1 5.3612 0.0100 0.0014 35 1 4.1493 -2.1300 0.0097 36 1 3.7083 -3.8758 -1.6869 37 1 3.1333 -2.2126 -1.9273 38 1 1.5745 -2.8971 -3.6117 39 1 3.1224 -3.6745 -4.0013 40 1 1.1825 -5.2450 -4.2387 41 1 2.3380 -5.7935 -2.9937 42 1 -0.6214 -4.0243 0.0977 43 1 0.2847 -5.2152 1.0896 44 1 -1.8576 -5.9174 -0.5627 45 1 -0.5388 -7.0420 -0.1348 46 1 -2.5784 -8.9413 -1.1894 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049300706.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:25 Heat of formation + Delta-G solvation = 29.592020 kcal Electronic energy + Delta-G solvation = -27255.082923 eV Core-core repulsion = 23724.476550 eV Total energy + Delta-G solvation = -3530.606373 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.72347 -39.10697 -37.42753 -35.44198 -32.94782 -32.51882 -32.38003 -31.11479 -28.85712 -28.16149 -27.13050 -24.98275 -24.44299 -23.08400 -21.93890 -21.40237 -20.65747 -19.68547 -19.03709 -17.04782 -16.50999 -15.95305 -15.86950 -15.46552 -15.02109 -14.71197 -14.38547 -14.12813 -14.07919 -13.72505 -13.58431 -13.28612 -13.20749 -12.84091 -12.43876 -12.35734 -12.14663 -12.14123 -11.84660 -11.56213 -11.53839 -11.24626 -11.08287 -10.83039 -10.68307 -10.50222 -10.41695 -10.07698 -9.96269 -9.81762 -9.58879 -9.14941 -8.92064 -8.80964 -8.54548 -8.20273 -6.80198 -5.67506 -3.01769 0.89155 1.17325 2.86497 3.15733 3.41586 3.46427 3.48650 3.63434 4.46838 4.51825 4.66720 4.69609 4.81028 4.89457 5.11393 5.12074 5.24811 5.33612 5.38887 5.46029 5.50527 5.60792 5.64088 5.67612 5.70406 5.77551 5.80919 5.88590 6.02357 6.09191 6.14698 6.15202 6.24732 6.29250 6.31375 6.39969 6.43354 6.58791 6.72798 6.74714 6.81922 6.92852 7.22241 7.60970 7.67288 7.72844 7.87010 8.27687 8.41892 9.21907 9.85829 10.54303 11.44446 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.003620 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.176035 B = 7732.258785 C = 8220.970020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.035 4.035 3 C -0.128 4.128 4 C -0.101 4.101 5 C -0.134 4.134 6 C -0.086 4.086 7 C -0.123 4.123 8 C 0.561 3.439 9 O -0.522 6.522 10 N -0.593 5.593 11 C 0.107 3.893 12 C -0.129 4.129 13 C -0.115 4.115 14 C 0.160 3.840 15 H 0.018 0.982 16 C 0.116 3.884 17 H 0.081 0.919 18 C -0.133 4.133 19 C 0.172 3.828 20 N -0.593 5.593 21 C -0.226 4.226 22 H 0.078 0.922 23 C -0.007 4.007 24 N -0.919 5.919 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.039 0.961 45 H 0.056 0.944 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.365 17.850 1.072 22.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.036 4.036 3 C -0.146 4.146 4 C -0.119 4.119 5 C -0.152 4.152 6 C -0.105 4.105 7 C -0.127 4.127 8 C 0.348 3.652 9 O -0.399 6.399 10 N -0.325 5.325 11 C -0.016 4.016 12 C -0.168 4.168 13 C -0.154 4.154 14 C 0.050 3.950 15 H 0.035 0.965 16 C 0.012 3.988 17 H 0.099 0.901 18 C -0.171 4.171 19 C 0.047 3.953 20 N -0.318 5.318 21 C -0.354 4.354 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.567 5.567 25 Si 0.740 3.260 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.077 0.923 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.699 17.540 1.482 21.705 hybrid contribution -0.078 -0.753 -0.711 1.039 sum 12.621 16.787 0.771 21.016 Atomic orbital electron populations 1.20878 0.90325 1.03167 1.03105 1.19977 0.96589 0.91585 0.95425 1.20997 0.94275 0.97373 1.01971 1.21269 0.94216 0.98172 0.98275 1.21053 0.99998 0.92183 1.01963 1.21307 0.92762 0.98708 0.97697 1.19978 0.93939 0.93538 1.05197 1.18237 0.83141 0.82996 0.80777 1.90784 1.28930 1.80351 1.39854 1.47934 1.40547 1.12732 1.31332 1.21857 0.90405 1.01742 0.87615 1.21900 1.00623 0.98518 0.95720 1.21432 0.98053 0.95285 1.00640 1.20760 0.90696 0.91599 0.91935 0.96490 1.22448 0.95011 0.81633 0.99748 0.90070 1.23001 0.95695 1.01222 0.97202 1.21748 0.96248 0.94449 0.82817 1.44095 1.52986 1.26558 1.08127 1.18988 1.23975 1.01809 0.90671 0.90388 1.24803 0.99980 0.98902 0.96690 1.69947 1.37078 1.32434 1.17213 0.86154 0.77630 0.81607 0.80574 1.21654 1.21711 1.20748 0.90273 0.91661 0.90730 0.85579 0.85843 0.85643 0.85462 0.91623 0.89935 0.91866 0.90919 0.91486 0.91761 0.89462 0.92263 0.94315 0.92613 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 9.13 36.01 0.33 -1.12 16 2 C -0.03 -0.43 5.91 -104.22 -0.62 -1.04 16 3 C -0.13 -1.24 9.71 -39.64 -0.38 -1.63 16 4 C -0.10 -0.86 10.04 -39.49 -0.40 -1.25 16 5 C -0.13 -1.17 10.03 -39.64 -0.40 -1.57 16 6 C -0.09 -0.92 7.61 -39.19 -0.30 -1.22 16 7 C -0.12 -1.64 4.90 -104.97 -0.51 -2.16 16 8 C 0.56 9.22 6.34 -12.33 -0.08 9.14 16 9 O -0.52 -10.19 12.22 5.32 0.07 -10.12 16 10 N -0.59 -9.45 2.91 -165.22 -0.48 -9.93 16 11 C 0.11 1.31 5.27 -3.44 -0.02 1.30 16 12 C -0.13 -1.67 5.93 -26.42 -0.16 -1.83 16 13 C -0.12 -1.98 5.44 -27.24 -0.15 -2.13 16 14 C 0.16 3.35 2.59 -68.37 -0.18 3.17 16 15 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 16 C 0.12 2.22 3.32 -66.91 -0.22 2.00 16 17 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 18 C -0.13 -2.85 5.03 -25.30 -0.13 -2.98 16 19 C 0.17 4.38 5.46 -1.69 -0.01 4.37 16 20 N -0.59 -15.28 3.34 -163.29 -0.55 -15.83 16 21 C -0.23 -6.27 9.94 -15.06 -0.15 -6.42 16 22 H 0.08 2.07 7.33 -52.49 -0.38 1.68 16 23 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 24 N -0.92 -27.38 10.46 55.49 0.58 -26.80 16 25 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 29 H 0.08 0.97 8.14 -51.92 -0.42 0.54 16 30 H 0.06 0.64 8.11 -51.93 -0.42 0.22 16 31 H 0.07 1.11 6.45 -51.93 -0.34 0.77 16 32 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.13 1.22 7.36 -52.49 -0.39 0.84 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.88 5.33 -51.93 -0.28 0.61 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.20 7.73 -51.93 -0.40 0.80 16 41 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 42 H 0.09 1.96 6.07 -51.93 -0.32 1.64 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.04 1.08 7.81 -51.93 -0.41 0.68 16 45 H 0.06 1.54 7.19 -51.93 -0.37 1.17 16 46 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -32.16 352.84 -10.63 -42.79 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.08 Total: 1.08 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -3.46 Total: -3.67 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.45 Total: -52.56 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.07 Total: -10.12 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.16 -10.63 -42.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049300706.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.383 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds