Wall clock time and date at job start Tue Mar 31 2020 10:37:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.37980 * 120.07043 * 2 1
4 4 C 1.38341 * 120.14080 * 179.97438 * 3 2 1
5 5 C 1.38382 * 120.29377 * 0.02562 * 4 3 2
6 6 C 1.37941 * 120.14308 * 359.75021 * 5 4 3
7 7 C 1.39555 * 120.07271 * 179.97438 * 2 1 3
8 8 C 1.47844 * 120.14379 * 359.97438 * 7 2 1
9 9 O 1.21547 * 120.00105 * 311.92868 * 8 7 2
10 10 N 1.34778 * 119.99788 * 131.93124 * 8 7 2
11 11 C 1.47859 * 122.22413 * 354.76826 * 10 8 7
12 12 C 1.52722 * 111.05438 * 232.47144 * 11 10 8
13 13 C 1.53876 * 111.52028 * 311.46305 * 12 11 10
14 14 C 1.51081 * 107.34581 * 56.93399 * 13 12 11
15 15 H 1.09000 * 108.73512 * 51.46910 * 14 13 12
16 16 C 1.45715 * 122.23021 * 174.75112 * 10 8 7
17 17 H 1.09002 * 111.64512 * 240.86689 * 16 10 8
18 18 C 1.53225 * 115.86522 * 10.03995 * 16 10 8
19 19 C 1.55471 * 101.27860 * 153.38368 * 18 16 10
20 20 N 1.45021 * 119.19318 * 176.73791 * 14 13 12
21 21 C 1.36931 * 126.56257 * 331.18688 * 20 14 13
22 22 H 1.07997 * 120.00537 * 359.97438 * 21 20 14
23 23 C 1.38817 * 119.99847 * 180.02562 * 21 20 14
24 24 N 1.31611 * 120.00121 * 359.97438 * 23 21 20
25 25 Si 1.86808 * 119.99883 * 179.97438 * 23 21 20
26 26 H 1.48495 * 109.46893 * 89.99775 * 25 23 21
27 27 H 1.48500 * 109.46811 * 209.99857 * 25 23 21
28 28 H 1.48501 * 109.47037 * 329.99614 * 25 23 21
29 29 H 1.09009 * 109.47019 * 274.12787 * 1 2 3
30 30 H 1.08997 * 109.47469 * 34.12386 * 1 2 3
31 31 H 1.09002 * 109.47444 * 154.13051 * 1 2 3
32 32 H 1.07996 * 119.93131 * 359.97075 * 3 2 1
33 33 H 1.07995 * 119.85117 * 179.97438 * 4 3 2
34 34 H 1.07992 * 119.92831 * 180.02562 * 5 4 3
35 35 H 1.07998 * 120.07128 * 180.27327 * 6 5 4
36 36 H 1.09002 * 109.16260 * 112.07007 * 11 10 8
37 37 H 1.08998 * 109.16040 * 352.87420 * 11 10 8
38 38 H 1.09002 * 109.07253 * 71.98816 * 12 11 10
39 39 H 1.09000 * 109.06938 * 191.00476 * 12 11 10
40 40 H 1.09005 * 109.87403 * 176.39276 * 13 12 11
41 41 H 1.09000 * 109.88349 * 297.46606 * 13 12 11
42 42 H 1.09007 * 111.56822 * 35.25020 * 18 16 10
43 43 H 1.09002 * 110.81230 * 271.18833 * 18 16 10
44 44 H 1.08998 * 109.96338 * 217.56601 * 19 18 16
45 45 H 1.08999 * 109.98937 * 96.33927 * 19 18 16
46 46 H 0.97002 * 120.00390 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1984 1.1941 0.0000
4 6 3.5818 1.1958 0.0005
5 6 4.2813 0.0018 0.0005
6 6 3.6022 -1.1989 0.0052
7 6 2.2063 -1.2077 0.0005
8 6 1.4719 -2.4908 0.0017
9 8 0.5599 -2.6684 0.7853
10 7 1.8139 -3.4637 -0.8662
11 6 2.8371 -3.2615 -1.9142
12 6 2.2971 -3.6470 -3.2898
13 6 1.6130 -5.0250 -3.2617
14 6 0.5199 -4.9641 -2.2206
15 1 -0.1019 -4.0906 -2.4164
16 6 1.2001 -4.7849 -0.8338
17 1 1.9372 -5.5662 -0.6485
18 6 -0.0196 -4.9331 0.0817
19 6 -0.7833 -6.0944 -0.6149
20 7 -0.3416 -6.1153 -2.0313
21 6 -0.6827 -7.0434 -2.9785
22 1 -0.2987 -6.9550 -3.9840
23 6 -1.5230 -8.0972 -2.6466
24 7 -1.9915 -8.2047 -1.4214
25 14 -1.9890 -9.3630 -3.9391
26 1 -1.0014 -10.4718 -3.9246
27 1 -3.3409 -9.9002 -3.6409
28 1 -1.9951 -8.7230 -5.2791
29 1 -0.3633 0.0740 1.0251
30 1 -0.3634 0.8507 -0.5765
31 1 -0.3634 -0.9247 -0.4484
32 1 1.6584 2.1294 -0.0005
33 1 4.1182 2.1331 0.0001
34 1 5.3612 0.0100 0.0014
35 1 4.1493 -2.1300 0.0097
36 1 3.7083 -3.8758 -1.6869
37 1 3.1333 -2.2126 -1.9273
38 1 1.5745 -2.8971 -3.6117
39 1 3.1224 -3.6745 -4.0013
40 1 1.1825 -5.2450 -4.2387
41 1 2.3380 -5.7935 -2.9937
42 1 -0.6214 -4.0243 0.0977
43 1 0.2847 -5.2152 1.0896
44 1 -1.8576 -5.9174 -0.5627
45 1 -0.5388 -7.0420 -0.1348
46 1 -2.5784 -8.9413 -1.1894
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049300706.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:37:24
Heat of formation + Delta-G solvation = 11.096278 kcal
Electronic energy + Delta-G solvation = -27255.884959 eV
Core-core repulsion = 23724.476550 eV
Total energy + Delta-G solvation = -3531.408409 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.97300 -40.23945 -38.75195 -36.98927 -34.33036 -34.02415 -33.58006 -32.22860
-30.64174 -29.68301 -28.04676 -26.49697 -26.18552 -24.12359 -23.03188 -22.80763
-22.02734 -21.42703 -20.23413 -18.67935 -17.79974 -17.27391 -16.86061 -16.76735
-16.66251 -16.07394 -15.67220 -15.56954 -15.45258 -14.95116 -14.76363 -14.56203
-14.27063 -14.05702 -14.03742 -13.85170 -13.45772 -13.20288 -13.15343 -13.01261
-12.84563 -12.71704 -12.55166 -12.18162 -12.07972 -12.02154 -11.91422 -11.79068
-11.73570 -11.58816 -11.43046 -10.78324 -10.38938 -9.81189 -9.65694 -9.54556
-8.92912 -7.84947 -5.22383 0.06193 0.43536 1.44956 1.47777 1.56153
1.69860 1.95524 2.49722 2.82113 3.29305 3.33482 3.52831 3.87283
3.90249 3.93092 3.98730 4.03861 4.06322 4.20164 4.23097 4.31087
4.40521 4.53785 4.55003 4.57268 4.62667 4.69909 4.73613 4.77374
4.80583 4.90098 4.99873 5.03274 5.07885 5.11780 5.24351 5.25803
5.40461 5.44296 5.46498 5.54584 5.56858 5.57853 5.62443 5.71646
6.02297 6.16382 6.47321 7.03897 7.15710 7.74006 8.44374 9.26877
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.026231 B = 0.003620 C = 0.003405
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1067.176035 B = 7732.258785 C = 8220.970020
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.056 4.056
3 C -0.128 4.128
4 C -0.091 4.091
5 C -0.126 4.126
6 C -0.088 4.088
7 C -0.148 4.148
8 C 0.556 3.444
9 O -0.567 6.567
10 N -0.594 5.594
11 C 0.103 3.897
12 C -0.119 4.119
13 C -0.110 4.110
14 C 0.154 3.846
15 H -0.006 1.006
16 C 0.132 3.868
17 H 0.085 0.915
18 C -0.116 4.116
19 C 0.183 3.817
20 N -0.612 5.612
21 C -0.234 4.234
22 H 0.089 0.911
23 C -0.070 4.070
24 N -0.955 5.955
25 Si 0.981 3.019
26 H -0.283 1.283
27 H -0.298 1.298
28 H -0.267 1.267
29 H 0.070 0.930
30 H 0.088 0.912
31 H 0.038 0.962
32 H 0.148 0.852
33 H 0.158 0.842
34 H 0.159 0.841
35 H 0.138 0.862
36 H 0.091 0.909
37 H 0.107 0.893
38 H 0.056 0.944
39 H 0.113 0.887
40 H 0.057 0.943
41 H 0.068 0.932
42 H 0.074 0.926
43 H 0.062 0.938
44 H -0.002 1.002
45 H 0.027 0.973
46 H 0.246 0.754
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.294 20.355 -0.500 26.714
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.057 4.057
3 C -0.146 4.146
4 C -0.109 4.109
5 C -0.144 4.144
6 C -0.107 4.107
7 C -0.151 4.151
8 C 0.346 3.654
9 O -0.447 6.447
10 N -0.326 5.326
11 C -0.018 4.018
12 C -0.158 4.158
13 C -0.149 4.149
14 C 0.046 3.954
15 H 0.012 0.988
16 C 0.026 3.974
17 H 0.103 0.897
18 C -0.154 4.154
19 C 0.058 3.942
20 N -0.336 5.336
21 C -0.363 4.363
22 H 0.107 0.893
23 C -0.262 4.262
24 N -0.604 5.604
25 Si 0.809 3.191
26 H -0.209 1.209
27 H -0.225 1.225
28 H -0.191 1.191
29 H 0.089 0.911
30 H 0.106 0.894
31 H 0.057 0.943
32 H 0.166 0.834
33 H 0.176 0.824
34 H 0.176 0.824
35 H 0.156 0.844
36 H 0.110 0.890
37 H 0.125 0.875
38 H 0.075 0.925
39 H 0.132 0.868
40 H 0.076 0.924
41 H 0.087 0.913
42 H 0.093 0.907
43 H 0.081 0.919
44 H 0.016 0.984
45 H 0.045 0.955
46 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 16.683 20.087 -0.128 26.112
hybrid contribution -1.291 -1.405 -0.198 1.919
sum 15.392 18.682 -0.327 24.208
Atomic orbital electron populations
1.20794 0.91423 1.02189 1.02634 1.20076 0.96183 0.92502 0.96920
1.21267 0.95229 0.97011 1.01096 1.21728 0.93677 0.99671 0.95838
1.21453 1.01635 0.91260 1.00022 1.21469 0.91403 1.00320 0.97490
1.19786 0.95074 0.91733 1.08471 1.18877 0.82640 0.84014 0.79878
1.90747 1.31035 1.81267 1.41639 1.48000 1.41009 1.11159 1.32401
1.22172 0.89833 1.03902 0.85873 1.21883 1.01445 0.95211 0.97239
1.21404 0.96726 0.98372 0.98370 1.20920 0.90995 0.88717 0.94741
0.98834 1.22034 0.94087 0.83982 0.97249 0.89698 1.22726 0.96513
0.98716 0.97457 1.21441 0.94463 0.94568 0.83738 1.44356 1.54080
1.27438 1.07775 1.19426 1.23462 1.01882 0.91519 0.89280 1.25720
1.00435 1.01270 0.98809 1.70185 1.37935 1.32963 1.19327 0.85044
0.76681 0.78908 0.78495 1.20933 1.22484 1.19141 0.91114 0.89370
0.94334 0.83431 0.82393 0.82352 0.84381 0.89039 0.87481 0.92522
0.86838 0.92450 0.91350 0.90745 0.91944 0.98416 0.95499 0.94465
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.87 9.13 71.24 0.65 -2.22 16
2 C -0.06 -1.30 5.91 -19.61 -0.12 -1.42 16
3 C -0.13 -2.05 9.71 22.23 0.22 -1.83 16
4 C -0.09 -1.08 10.04 22.33 0.22 -0.86 16
5 C -0.13 -1.56 10.03 22.23 0.22 -1.34 16
6 C -0.09 -1.59 7.61 22.53 0.17 -1.42 16
7 C -0.15 -3.74 4.90 -20.09 -0.10 -3.84 16
8 C 0.56 18.52 6.34 86.79 0.55 19.07 16
9 O -0.57 -23.40 12.22 -3.86 -0.05 -23.45 16
10 N -0.59 -18.65 2.91 -794.91 -2.32 -20.96 16
11 C 0.10 2.23 5.27 86.03 0.45 2.68 16
12 C -0.12 -2.75 5.93 30.80 0.18 -2.57 16
13 C -0.11 -3.67 5.44 30.26 0.16 -3.50 16
14 C 0.15 6.66 2.59 45.50 0.12 6.78 16
15 H -0.01 -0.27 8.06 -2.39 -0.02 -0.29 16
16 C 0.13 5.16 3.32 46.07 0.15 5.32 16
17 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16
18 C -0.12 -5.31 5.03 31.52 0.16 -5.15 16
19 C 0.18 10.07 5.46 86.87 0.47 10.54 16
20 N -0.61 -33.04 3.34 -670.52 -2.24 -35.28 16
21 C -0.23 -13.35 9.94 84.04 0.84 -12.51 16
22 H 0.09 4.76 7.33 -2.91 -0.02 4.73 16
23 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16
24 N -0.96 -59.90 10.46 21.65 0.23 -59.67 16
25 Si 0.98 46.64 29.55 68.60 2.03 48.67 16
26 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16
27 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16
28 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16
29 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16
30 H 0.09 1.70 8.11 -2.39 -0.02 1.68 16
31 H 0.04 1.23 6.45 -2.39 -0.02 1.21 16
32 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16
33 H 0.16 0.83 8.06 -2.91 -0.02 0.80 16
34 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16
35 H 0.14 2.12 7.36 -2.91 -0.02 2.10 16
36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16
37 H 0.11 1.87 5.33 -2.39 -0.01 1.86 16
38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16
39 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16
40 H 0.06 2.00 7.73 -2.38 -0.02 1.99 16
41 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16
42 H 0.07 3.63 6.07 -2.38 -0.01 3.62 16
43 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16
44 H 0.00 -0.15 7.81 -2.39 -0.02 -0.17 16
45 H 0.03 1.61 7.19 -2.39 -0.02 1.59 16
46 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16
Total: -1.00 -76.59 352.84 3.44 -73.15
By element:
Atomic # 1 Polarization: 12.45 SS G_CDS: 0.97 Total: 13.41 kcal
Atomic # 6 Polarization: -0.70 SS G_CDS: 4.83 Total: 4.13 kcal
Atomic # 7 Polarization: -111.59 SS G_CDS: -4.33 Total: -115.92 kcal
Atomic # 8 Polarization: -23.40 SS G_CDS: -0.05 Total: -23.45 kcal
Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal
Total: -76.59 3.44 -73.15 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049300706.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.245 kcal
(2) G-P(sol) polarization free energy of solvation -76.590 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.655 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.149 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.096 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds