Wall clock time and date at job start Tue Mar 31 2020 10:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37980 * 120.07043 * 2 1 4 4 C 1.38341 * 120.14080 * 179.97438 * 3 2 1 5 5 C 1.38382 * 120.29377 * 0.02562 * 4 3 2 6 6 C 1.37941 * 120.14308 * 359.75021 * 5 4 3 7 7 C 1.39555 * 120.07271 * 179.97438 * 2 1 3 8 8 C 1.47844 * 120.14379 * 359.97438 * 7 2 1 9 9 O 1.21547 * 120.00105 * 311.92868 * 8 7 2 10 10 N 1.34778 * 119.99788 * 131.93124 * 8 7 2 11 11 C 1.47859 * 122.22413 * 354.76826 * 10 8 7 12 12 C 1.52722 * 111.05438 * 232.47144 * 11 10 8 13 13 C 1.53876 * 111.52028 * 311.46305 * 12 11 10 14 14 C 1.51081 * 107.34581 * 56.93399 * 13 12 11 15 15 H 1.09000 * 108.73512 * 51.46910 * 14 13 12 16 16 C 1.45715 * 122.23021 * 174.75112 * 10 8 7 17 17 H 1.09002 * 111.64512 * 240.86689 * 16 10 8 18 18 C 1.53225 * 115.86522 * 10.03995 * 16 10 8 19 19 C 1.55471 * 101.27860 * 153.38368 * 18 16 10 20 20 N 1.45021 * 119.19318 * 176.73791 * 14 13 12 21 21 C 1.36931 * 126.56257 * 331.18688 * 20 14 13 22 22 H 1.07997 * 120.00537 * 359.97438 * 21 20 14 23 23 C 1.38817 * 119.99847 * 180.02562 * 21 20 14 24 24 N 1.31611 * 120.00121 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99883 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.46893 * 89.99775 * 25 23 21 27 27 H 1.48500 * 109.46811 * 209.99857 * 25 23 21 28 28 H 1.48501 * 109.47037 * 329.99614 * 25 23 21 29 29 H 1.09009 * 109.47019 * 274.12787 * 1 2 3 30 30 H 1.08997 * 109.47469 * 34.12386 * 1 2 3 31 31 H 1.09002 * 109.47444 * 154.13051 * 1 2 3 32 32 H 1.07996 * 119.93131 * 359.97075 * 3 2 1 33 33 H 1.07995 * 119.85117 * 179.97438 * 4 3 2 34 34 H 1.07992 * 119.92831 * 180.02562 * 5 4 3 35 35 H 1.07998 * 120.07128 * 180.27327 * 6 5 4 36 36 H 1.09002 * 109.16260 * 112.07007 * 11 10 8 37 37 H 1.08998 * 109.16040 * 352.87420 * 11 10 8 38 38 H 1.09002 * 109.07253 * 71.98816 * 12 11 10 39 39 H 1.09000 * 109.06938 * 191.00476 * 12 11 10 40 40 H 1.09005 * 109.87403 * 176.39276 * 13 12 11 41 41 H 1.09000 * 109.88349 * 297.46606 * 13 12 11 42 42 H 1.09007 * 111.56822 * 35.25020 * 18 16 10 43 43 H 1.09002 * 110.81230 * 271.18833 * 18 16 10 44 44 H 1.08998 * 109.96338 * 217.56601 * 19 18 16 45 45 H 1.08999 * 109.98937 * 96.33927 * 19 18 16 46 46 H 0.97002 * 120.00390 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5818 1.1958 0.0005 5 6 4.2813 0.0018 0.0005 6 6 3.6022 -1.1989 0.0052 7 6 2.2063 -1.2077 0.0005 8 6 1.4719 -2.4908 0.0017 9 8 0.5599 -2.6684 0.7853 10 7 1.8139 -3.4637 -0.8662 11 6 2.8371 -3.2615 -1.9142 12 6 2.2971 -3.6470 -3.2898 13 6 1.6130 -5.0250 -3.2617 14 6 0.5199 -4.9641 -2.2206 15 1 -0.1019 -4.0906 -2.4164 16 6 1.2001 -4.7849 -0.8338 17 1 1.9372 -5.5662 -0.6485 18 6 -0.0196 -4.9331 0.0817 19 6 -0.7833 -6.0944 -0.6149 20 7 -0.3416 -6.1153 -2.0313 21 6 -0.6827 -7.0434 -2.9785 22 1 -0.2987 -6.9550 -3.9840 23 6 -1.5230 -8.0972 -2.6466 24 7 -1.9915 -8.2047 -1.4214 25 14 -1.9890 -9.3630 -3.9391 26 1 -1.0014 -10.4718 -3.9246 27 1 -3.3409 -9.9002 -3.6409 28 1 -1.9951 -8.7230 -5.2791 29 1 -0.3633 0.0740 1.0251 30 1 -0.3634 0.8507 -0.5765 31 1 -0.3634 -0.9247 -0.4484 32 1 1.6584 2.1294 -0.0005 33 1 4.1182 2.1331 0.0001 34 1 5.3612 0.0100 0.0014 35 1 4.1493 -2.1300 0.0097 36 1 3.7083 -3.8758 -1.6869 37 1 3.1333 -2.2126 -1.9273 38 1 1.5745 -2.8971 -3.6117 39 1 3.1224 -3.6745 -4.0013 40 1 1.1825 -5.2450 -4.2387 41 1 2.3380 -5.7935 -2.9937 42 1 -0.6214 -4.0243 0.0977 43 1 0.2847 -5.2152 1.0896 44 1 -1.8576 -5.9174 -0.5627 45 1 -0.5388 -7.0420 -0.1348 46 1 -2.5784 -8.9413 -1.1894 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049300706.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:24 Heat of formation + Delta-G solvation = 11.096278 kcal Electronic energy + Delta-G solvation = -27255.884959 eV Core-core repulsion = 23724.476550 eV Total energy + Delta-G solvation = -3531.408409 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.97300 -40.23945 -38.75195 -36.98927 -34.33036 -34.02415 -33.58006 -32.22860 -30.64174 -29.68301 -28.04676 -26.49697 -26.18552 -24.12359 -23.03188 -22.80763 -22.02734 -21.42703 -20.23413 -18.67935 -17.79974 -17.27391 -16.86061 -16.76735 -16.66251 -16.07394 -15.67220 -15.56954 -15.45258 -14.95116 -14.76363 -14.56203 -14.27063 -14.05702 -14.03742 -13.85170 -13.45772 -13.20288 -13.15343 -13.01261 -12.84563 -12.71704 -12.55166 -12.18162 -12.07972 -12.02154 -11.91422 -11.79068 -11.73570 -11.58816 -11.43046 -10.78324 -10.38938 -9.81189 -9.65694 -9.54556 -8.92912 -7.84947 -5.22383 0.06193 0.43536 1.44956 1.47777 1.56153 1.69860 1.95524 2.49722 2.82113 3.29305 3.33482 3.52831 3.87283 3.90249 3.93092 3.98730 4.03861 4.06322 4.20164 4.23097 4.31087 4.40521 4.53785 4.55003 4.57268 4.62667 4.69909 4.73613 4.77374 4.80583 4.90098 4.99873 5.03274 5.07885 5.11780 5.24351 5.25803 5.40461 5.44296 5.46498 5.54584 5.56858 5.57853 5.62443 5.71646 6.02297 6.16382 6.47321 7.03897 7.15710 7.74006 8.44374 9.26877 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.003620 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.176035 B = 7732.258785 C = 8220.970020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.056 4.056 3 C -0.128 4.128 4 C -0.091 4.091 5 C -0.126 4.126 6 C -0.088 4.088 7 C -0.148 4.148 8 C 0.556 3.444 9 O -0.567 6.567 10 N -0.594 5.594 11 C 0.103 3.897 12 C -0.119 4.119 13 C -0.110 4.110 14 C 0.154 3.846 15 H -0.006 1.006 16 C 0.132 3.868 17 H 0.085 0.915 18 C -0.116 4.116 19 C 0.183 3.817 20 N -0.612 5.612 21 C -0.234 4.234 22 H 0.089 0.911 23 C -0.070 4.070 24 N -0.955 5.955 25 Si 0.981 3.019 26 H -0.283 1.283 27 H -0.298 1.298 28 H -0.267 1.267 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.038 0.962 32 H 0.148 0.852 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.138 0.862 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.056 0.944 39 H 0.113 0.887 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.062 0.938 44 H -0.002 1.002 45 H 0.027 0.973 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.294 20.355 -0.500 26.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.057 4.057 3 C -0.146 4.146 4 C -0.109 4.109 5 C -0.144 4.144 6 C -0.107 4.107 7 C -0.151 4.151 8 C 0.346 3.654 9 O -0.447 6.447 10 N -0.326 5.326 11 C -0.018 4.018 12 C -0.158 4.158 13 C -0.149 4.149 14 C 0.046 3.954 15 H 0.012 0.988 16 C 0.026 3.974 17 H 0.103 0.897 18 C -0.154 4.154 19 C 0.058 3.942 20 N -0.336 5.336 21 C -0.363 4.363 22 H 0.107 0.893 23 C -0.262 4.262 24 N -0.604 5.604 25 Si 0.809 3.191 26 H -0.209 1.209 27 H -0.225 1.225 28 H -0.191 1.191 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.166 0.834 33 H 0.176 0.824 34 H 0.176 0.824 35 H 0.156 0.844 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.075 0.925 39 H 0.132 0.868 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.016 0.984 45 H 0.045 0.955 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 16.683 20.087 -0.128 26.112 hybrid contribution -1.291 -1.405 -0.198 1.919 sum 15.392 18.682 -0.327 24.208 Atomic orbital electron populations 1.20794 0.91423 1.02189 1.02634 1.20076 0.96183 0.92502 0.96920 1.21267 0.95229 0.97011 1.01096 1.21728 0.93677 0.99671 0.95838 1.21453 1.01635 0.91260 1.00022 1.21469 0.91403 1.00320 0.97490 1.19786 0.95074 0.91733 1.08471 1.18877 0.82640 0.84014 0.79878 1.90747 1.31035 1.81267 1.41639 1.48000 1.41009 1.11159 1.32401 1.22172 0.89833 1.03902 0.85873 1.21883 1.01445 0.95211 0.97239 1.21404 0.96726 0.98372 0.98370 1.20920 0.90995 0.88717 0.94741 0.98834 1.22034 0.94087 0.83982 0.97249 0.89698 1.22726 0.96513 0.98716 0.97457 1.21441 0.94463 0.94568 0.83738 1.44356 1.54080 1.27438 1.07775 1.19426 1.23462 1.01882 0.91519 0.89280 1.25720 1.00435 1.01270 0.98809 1.70185 1.37935 1.32963 1.19327 0.85044 0.76681 0.78908 0.78495 1.20933 1.22484 1.19141 0.91114 0.89370 0.94334 0.83431 0.82393 0.82352 0.84381 0.89039 0.87481 0.92522 0.86838 0.92450 0.91350 0.90745 0.91944 0.98416 0.95499 0.94465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.87 9.13 71.24 0.65 -2.22 16 2 C -0.06 -1.30 5.91 -19.61 -0.12 -1.42 16 3 C -0.13 -2.05 9.71 22.23 0.22 -1.83 16 4 C -0.09 -1.08 10.04 22.33 0.22 -0.86 16 5 C -0.13 -1.56 10.03 22.23 0.22 -1.34 16 6 C -0.09 -1.59 7.61 22.53 0.17 -1.42 16 7 C -0.15 -3.74 4.90 -20.09 -0.10 -3.84 16 8 C 0.56 18.52 6.34 86.79 0.55 19.07 16 9 O -0.57 -23.40 12.22 -3.86 -0.05 -23.45 16 10 N -0.59 -18.65 2.91 -794.91 -2.32 -20.96 16 11 C 0.10 2.23 5.27 86.03 0.45 2.68 16 12 C -0.12 -2.75 5.93 30.80 0.18 -2.57 16 13 C -0.11 -3.67 5.44 30.26 0.16 -3.50 16 14 C 0.15 6.66 2.59 45.50 0.12 6.78 16 15 H -0.01 -0.27 8.06 -2.39 -0.02 -0.29 16 16 C 0.13 5.16 3.32 46.07 0.15 5.32 16 17 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 18 C -0.12 -5.31 5.03 31.52 0.16 -5.15 16 19 C 0.18 10.07 5.46 86.87 0.47 10.54 16 20 N -0.61 -33.04 3.34 -670.52 -2.24 -35.28 16 21 C -0.23 -13.35 9.94 84.04 0.84 -12.51 16 22 H 0.09 4.76 7.33 -2.91 -0.02 4.73 16 23 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 24 N -0.96 -59.90 10.46 21.65 0.23 -59.67 16 25 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 26 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 27 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 28 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 29 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.09 1.70 8.11 -2.39 -0.02 1.68 16 31 H 0.04 1.23 6.45 -2.39 -0.02 1.21 16 32 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.16 0.83 8.06 -2.91 -0.02 0.80 16 34 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 35 H 0.14 2.12 7.36 -2.91 -0.02 2.10 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.11 1.87 5.33 -2.39 -0.01 1.86 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.06 2.00 7.73 -2.38 -0.02 1.99 16 41 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16 42 H 0.07 3.63 6.07 -2.38 -0.01 3.62 16 43 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 44 H 0.00 -0.15 7.81 -2.39 -0.02 -0.17 16 45 H 0.03 1.61 7.19 -2.39 -0.02 1.59 16 46 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -76.59 352.84 3.44 -73.15 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.97 Total: 13.41 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 4.83 Total: 4.13 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -4.33 Total: -115.92 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.05 Total: -23.45 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -76.59 3.44 -73.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049300706.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.245 kcal (2) G-P(sol) polarization free energy of solvation -76.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds