Wall clock time and date at job start Tue Mar 31 2020 10:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.37977 * 120.07460 * 2 1 4 4 C 1.38338 * 120.14639 * 180.23389 * 3 2 1 5 5 C 1.38383 * 120.28703 * 359.78541 * 4 3 2 6 6 C 1.37930 * 120.15221 * 0.02562 * 5 4 3 7 7 C 1.39551 * 120.07176 * 179.78775 * 2 1 3 8 8 C 1.47844 * 120.14489 * 0.02801 * 7 2 1 9 9 O 1.21551 * 120.00642 * 53.97824 * 8 7 2 10 10 N 1.34779 * 119.99770 * 233.97866 * 8 7 2 11 11 C 1.47851 * 121.94354 * 355.11530 * 10 8 7 12 12 C 1.52710 * 111.24038 * 127.34601 * 11 10 8 13 13 C 1.53868 * 111.52613 * 48.17351 * 12 11 10 14 14 C 1.51082 * 107.33999 * 303.07394 * 13 12 11 15 15 H 1.08996 * 108.30909 * 308.76133 * 14 13 12 16 16 C 1.45721 * 122.22933 * 174.40208 * 10 8 7 17 17 H 1.09006 * 111.64419 * 119.13591 * 16 10 8 18 18 C 1.53433 * 116.37649 * 350.09299 * 16 10 8 19 19 C 1.55475 * 101.67215 * 207.26743 * 18 16 10 20 20 N 1.45033 * 119.18986 * 183.88210 * 14 13 12 21 21 C 1.36930 * 126.56142 * 28.78996 * 20 14 13 22 22 H 1.08004 * 119.99736 * 0.23242 * 21 20 14 23 23 C 1.38805 * 120.00325 * 180.23490 * 21 20 14 24 24 N 1.31620 * 120.00115 * 347.04915 * 23 21 20 25 25 Si 1.86803 * 120.00221 * 167.04592 * 23 21 20 26 26 H 1.48500 * 109.47241 * 275.02943 * 25 23 21 27 27 H 1.48501 * 109.47012 * 35.02868 * 25 23 21 28 28 H 1.48502 * 109.47230 * 155.02914 * 25 23 21 29 29 H 1.08995 * 109.46881 * 264.92492 * 1 2 3 30 30 H 1.09002 * 109.46738 * 24.92278 * 1 2 3 31 31 H 1.09004 * 109.46803 * 144.92130 * 1 2 3 32 32 H 1.08006 * 119.92723 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.85750 * 179.76450 * 4 3 2 34 34 H 1.08008 * 119.92414 * 179.97438 * 5 4 3 35 35 H 1.07993 * 120.08244 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.35831 * 6.69305 * 11 10 8 37 37 H 1.09006 * 108.74183 * 247.59429 * 11 10 8 38 38 H 1.09002 * 109.07142 * 287.64812 * 12 11 10 39 39 H 1.09004 * 109.01582 * 168.66099 * 12 11 10 40 40 H 1.09000 * 109.88732 * 183.61520 * 13 12 11 41 41 H 1.09001 * 109.88546 * 62.52961 * 13 12 11 42 42 H 1.08996 * 110.98861 * 89.16720 * 18 16 10 43 43 H 1.09002 * 111.01588 * 325.37335 * 18 16 10 44 44 H 1.08998 * 109.95960 * 263.22014 * 19 18 16 45 45 H 1.09003 * 109.98810 * 141.99194 * 19 18 16 46 46 H 0.96993 * 120.00616 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5819 1.1958 -0.0049 5 6 4.2813 0.0017 -0.0053 6 6 3.6024 -1.1989 -0.0014 7 6 2.2064 -1.2077 0.0045 8 6 1.4720 -2.4908 0.0086 9 8 0.6332 -2.7139 -0.8423 10 7 1.7327 -3.4134 0.9560 11 6 2.8155 -3.2331 1.9464 12 6 2.2975 -3.4141 3.3715 13 6 1.4511 -4.6919 3.5066 14 6 0.3263 -4.5952 2.5026 15 1 -0.1676 -3.6325 2.6334 16 6 0.9579 -4.6414 1.0789 17 1 1.5816 -5.5254 0.9452 18 6 -0.3174 -4.7306 0.2305 19 6 -1.1908 -5.6995 1.0765 20 7 -0.6837 -5.6356 2.4695 21 6 -1.0948 -6.4071 3.5234 22 1 -0.6569 -6.2643 4.5003 23 6 -2.0743 -7.3726 3.3363 24 7 -2.7865 -7.3818 2.2295 25 14 -2.3816 -8.6593 4.6553 26 1 -1.4341 -9.7885 4.4756 27 1 -2.1797 -8.0523 5.9954 28 1 -3.7752 -9.1598 4.5434 29 1 -0.3633 -0.0909 1.0236 30 1 -0.3633 0.9320 -0.4331 31 1 -0.3633 -0.8410 -0.5906 32 1 1.6585 2.1294 -0.0004 33 1 4.1184 2.1331 -0.0087 34 1 5.3614 0.0099 -0.0096 35 1 4.1493 -2.1301 -0.0022 36 1 3.2369 -2.2332 1.8431 37 1 3.5940 -3.9710 1.7523 38 1 1.6867 -2.5523 3.6406 39 1 3.1462 -3.4755 4.0528 40 1 1.0430 -4.7615 4.5149 41 1 2.0645 -5.5673 3.2929 42 1 -0.1044 -5.1533 -0.7513 43 1 -0.7945 -3.7549 0.1381 44 1 -1.0977 -6.7155 0.6928 45 1 -2.2338 -5.3843 1.0454 46 1 -3.4711 -8.0563 2.0988 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049300712.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:38 Heat of formation + Delta-G solvation = 27.865161 kcal Electronic energy + Delta-G solvation = -27295.814885 eV Core-core repulsion = 23765.133629 eV Total energy + Delta-G solvation = -3530.681255 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.72148 -39.08989 -37.44817 -35.44897 -32.92671 -32.55103 -32.38195 -31.13696 -28.88716 -28.18694 -27.12423 -24.99333 -24.45363 -23.07895 -21.97566 -21.41931 -20.67798 -19.68820 -19.00585 -17.08994 -16.50375 -15.97862 -15.91624 -15.45537 -15.03714 -14.71482 -14.38307 -14.15746 -14.06344 -13.69403 -13.61202 -13.30827 -13.26965 -12.79909 -12.46279 -12.34931 -12.19259 -12.08997 -11.87481 -11.60956 -11.53201 -11.25451 -11.06166 -10.85979 -10.66597 -10.49310 -10.42105 -10.11797 -9.97302 -9.84493 -9.61548 -9.19759 -8.93724 -8.81453 -8.54156 -8.20741 -6.82832 -5.71964 -3.02171 0.91719 1.17793 2.82401 3.14844 3.41508 3.46664 3.48530 3.61387 4.45672 4.51325 4.66864 4.69931 4.81133 4.88519 5.10208 5.13377 5.25928 5.33430 5.35820 5.43383 5.50228 5.59546 5.62803 5.67489 5.72710 5.77813 5.78887 5.85926 6.01263 6.08726 6.14993 6.17418 6.25444 6.26575 6.30324 6.39110 6.44286 6.56053 6.71898 6.73552 6.79628 6.88520 7.16599 7.57878 7.63343 7.69771 7.83564 8.24098 8.39295 9.18963 9.84254 10.52767 11.41475 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.025279 B = 0.003694 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.372505 B = 7579.056742 C = 8069.273244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.035 4.035 3 C -0.127 4.127 4 C -0.102 4.102 5 C -0.133 4.133 6 C -0.089 4.089 7 C -0.121 4.121 8 C 0.561 3.439 9 O -0.525 6.525 10 N -0.591 5.591 11 C 0.103 3.897 12 C -0.129 4.129 13 C -0.116 4.116 14 C 0.160 3.840 15 H 0.016 0.984 16 C 0.116 3.884 17 H 0.082 0.918 18 C -0.126 4.126 19 C 0.172 3.828 20 N -0.592 5.592 21 C -0.230 4.230 22 H 0.079 0.921 23 C -0.005 4.005 24 N -0.914 5.914 25 Si 0.906 3.094 26 H -0.289 1.289 27 H -0.282 1.282 28 H -0.292 1.292 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.045 0.955 45 H 0.048 0.952 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.963 15.759 -2.845 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.036 4.036 3 C -0.145 4.145 4 C -0.120 4.120 5 C -0.151 4.151 6 C -0.107 4.107 7 C -0.125 4.125 8 C 0.349 3.651 9 O -0.402 6.402 10 N -0.323 5.323 11 C -0.019 4.019 12 C -0.168 4.168 13 C -0.154 4.154 14 C 0.050 3.950 15 H 0.034 0.966 16 C 0.012 3.988 17 H 0.100 0.900 18 C -0.165 4.165 19 C 0.047 3.953 20 N -0.317 5.317 21 C -0.358 4.358 22 H 0.097 0.903 23 C -0.202 4.202 24 N -0.561 5.561 25 Si 0.736 3.264 26 H -0.216 1.216 27 H -0.208 1.208 28 H -0.218 1.218 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.312 15.450 -3.268 21.313 hybrid contribution -0.042 -0.713 0.790 1.065 sum 14.271 14.738 -2.478 20.664 Atomic orbital electron populations 1.21064 0.90478 1.04250 1.03283 1.19943 0.96576 0.91517 0.95528 1.21019 0.94277 0.97355 1.01816 1.21266 0.94217 0.98166 0.98397 1.21044 0.99979 0.92175 1.01910 1.21267 0.92690 0.98695 0.98080 1.19912 0.93961 0.93555 1.05024 1.18241 0.82549 0.82975 0.81315 1.90769 1.33651 1.78610 1.37146 1.47969 1.34272 1.19955 1.30113 1.21925 0.89178 1.02250 0.88594 1.21897 1.00173 0.99359 0.95340 1.21432 0.96979 0.96282 1.00744 1.20791 0.89481 0.92872 0.91823 0.96631 1.22469 0.92602 0.84602 0.99131 0.90047 1.22897 0.94450 1.01471 0.97645 1.21708 0.95433 0.96092 0.82049 1.44076 1.40631 1.40269 1.06681 1.18951 1.17219 1.10916 0.88689 0.90318 1.24774 0.98061 0.99759 0.97575 1.69986 1.23757 1.35829 1.26516 0.86233 0.77047 0.82244 0.80854 1.21585 1.20771 1.21807 0.90924 0.91421 0.88921 0.85578 0.85845 0.85640 0.85469 0.89645 0.91558 0.91871 0.90913 0.91446 0.91755 0.91906 0.90430 0.93696 0.93399 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.53 36.01 0.34 -1.35 16 2 C -0.03 -0.43 5.91 -104.22 -0.62 -1.05 16 3 C -0.13 -1.25 9.67 -39.64 -0.38 -1.64 16 4 C -0.10 -0.88 10.04 -39.49 -0.40 -1.28 16 5 C -0.13 -1.17 10.03 -39.64 -0.40 -1.57 16 6 C -0.09 -0.95 7.48 -39.18 -0.29 -1.24 16 7 C -0.12 -1.63 4.95 -104.97 -0.52 -2.15 16 8 C 0.56 9.24 6.55 -12.33 -0.08 9.16 16 9 O -0.52 -10.22 12.11 5.32 0.06 -10.15 16 10 N -0.59 -9.41 2.92 -164.89 -0.48 -9.89 16 11 C 0.10 1.27 5.54 -3.45 -0.02 1.25 16 12 C -0.13 -1.66 5.92 -26.43 -0.16 -1.82 16 13 C -0.12 -1.98 5.45 -27.24 -0.15 -2.13 16 14 C 0.16 3.33 2.59 -68.18 -0.18 3.15 16 15 H 0.02 0.37 8.03 -51.93 -0.42 -0.05 16 16 C 0.12 2.21 3.35 -66.62 -0.22 1.99 16 17 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 18 C -0.13 -2.68 4.93 -25.19 -0.12 -2.80 16 19 C 0.17 4.33 5.46 -1.69 -0.01 4.32 16 20 N -0.59 -15.15 3.35 -163.07 -0.55 -15.69 16 21 C -0.23 -6.34 9.91 -15.07 -0.15 -6.49 16 22 H 0.08 2.08 7.34 -52.48 -0.39 1.70 16 23 C 0.00 -0.13 5.44 -17.43 -0.09 -0.23 16 24 N -0.91 -27.14 10.67 55.49 0.59 -26.54 16 25 Si 0.91 22.05 29.57 -169.99 -5.03 17.03 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 31 H 0.09 1.41 5.90 -51.93 -0.31 1.11 16 32 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 33 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 35 H 0.13 1.20 7.38 -52.49 -0.39 0.81 16 36 H 0.09 0.91 4.88 -51.93 -0.25 0.65 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.20 7.70 -51.93 -0.40 0.80 16 41 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.08 1.71 6.39 -51.93 -0.33 1.38 16 44 H 0.04 1.22 7.56 -51.93 -0.39 0.83 16 45 H 0.05 1.33 7.58 -51.93 -0.39 0.94 16 46 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 352.95 15.07 5.32 5.32 Total: -1.00 -32.05 352.95 -10.57 -42.62 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.05 Total: 1.18 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -3.45 Total: -3.87 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.44 Total: -52.13 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.06 Total: -10.15 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.05 -10.57 -42.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049300712.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.483 kcal (2) G-P(sol) polarization free energy of solvation -32.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds