Wall clock time and date at job start Tue Mar 31 2020 10:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38381 * 119.92896 * 2 1 4 4 C 1.38341 * 120.29407 * 180.02562 * 3 2 1 5 5 C 1.37975 * 120.14185 * 359.97438 * 4 3 2 6 6 C 1.39557 * 119.85659 * 0.02562 * 5 4 3 7 7 C 1.47842 * 120.14821 * 179.97438 * 6 5 4 8 8 O 1.21555 * 120.00338 * 215.79943 * 7 6 5 9 9 N 1.34776 * 119.99973 * 35.79009 * 7 6 5 10 10 C 1.47863 * 122.22603 * 5.73172 * 9 7 6 11 11 C 1.52716 * 111.05456 * 127.50494 * 10 9 7 12 12 C 1.53868 * 111.52481 * 48.54422 * 11 10 9 13 13 C 1.51085 * 107.34159 * 303.06506 * 12 11 10 14 14 H 1.08997 * 108.73421 * 309.15495 * 13 12 11 15 15 C 1.45726 * 122.23003 * 185.44086 * 9 7 6 16 16 H 1.09000 * 111.06819 * 119.47797 * 15 9 7 17 17 C 1.53333 * 116.42963 * 350.63352 * 15 9 7 18 18 C 1.55478 * 101.58302 * 206.93103 * 17 15 9 19 19 N 1.45020 * 119.19503 * 183.88799 * 13 12 11 20 20 C 1.36938 * 126.56473 * 28.73975 * 19 13 12 21 21 H 1.07998 * 119.99678 * 0.02562 * 20 19 13 22 22 C 1.38816 * 120.00173 * 179.97438 * 20 19 13 23 23 N 1.31613 * 119.99823 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99896 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47501 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47220 * 120.00265 * 24 22 20 27 27 H 1.48499 * 109.47474 * 240.00480 * 24 22 20 28 28 C 1.37931 * 119.92707 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47259 * 269.99844 * 1 2 3 30 30 H 1.09004 * 109.47065 * 30.00137 * 1 2 3 31 31 H 1.08998 * 109.47231 * 149.99961 * 1 2 3 32 32 H 1.08002 * 119.85442 * 359.97429 * 3 2 1 33 33 H 1.07999 * 119.92827 * 180.02562 * 4 3 2 34 34 H 1.08007 * 120.07246 * 180.02562 * 5 4 3 35 35 H 1.08992 * 109.15754 * 247.91524 * 10 9 7 36 36 H 1.09002 * 109.15904 * 7.15277 * 10 9 7 37 37 H 1.08998 * 109.06461 * 169.06392 * 11 10 9 38 38 H 1.08999 * 109.07165 * 288.00943 * 11 10 9 39 39 H 1.08997 * 109.88352 * 62.52009 * 12 11 10 40 40 H 1.08998 * 109.88325 * 183.60859 * 12 11 10 41 41 H 1.08996 * 111.21599 * 88.78628 * 17 15 9 42 42 H 1.08996 * 110.84533 * 324.91385 * 17 15 9 43 43 H 1.08996 * 109.96204 * 263.00747 * 18 17 15 44 44 H 1.08997 * 109.95954 * 141.76523 * 18 17 15 45 45 H 0.97004 * 120.00027 * 180.02562 * 23 22 20 46 46 H 1.08000 * 120.07187 * 0.27014 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2081 -0.0005 5 6 4.2812 0.0193 -0.0005 6 6 3.5911 -1.1937 -0.0005 7 6 4.3351 -2.4712 -0.0011 8 8 3.9030 -3.4260 -0.6169 9 7 5.4927 -2.5772 0.6810 10 6 6.0007 -1.4907 1.5457 11 6 6.3237 -2.0089 2.9454 12 6 7.1737 -3.2903 2.8907 13 6 6.4077 -4.3044 2.0737 14 1 5.3922 -4.3730 2.4636 15 6 6.3238 -3.7727 0.6204 16 1 7.3135 -3.5423 0.2261 17 6 5.7142 -4.9930 -0.0798 18 6 6.4602 -6.1617 0.6237 19 7 6.9417 -5.6449 1.9288 20 6 7.7384 -6.3070 2.8244 21 1 8.0270 -5.8271 3.7479 22 6 8.1741 -7.5952 2.5458 23 7 7.8219 -8.1801 1.4206 24 14 9.2614 -8.4979 3.7673 25 1 9.5122 -7.6278 4.9443 26 1 8.5827 -9.7429 4.2084 27 1 10.5535 -8.8410 3.1207 28 6 2.1951 -1.1954 -0.0005 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6539 2.1326 -0.0004 33 1 4.1136 2.1475 -0.0001 34 1 5.3613 0.0275 -0.0005 35 1 6.9041 -1.0728 1.1015 36 1 5.2443 -0.7093 1.6200 37 1 6.8717 -1.2412 3.4917 38 1 5.3923 -2.2215 3.4702 39 1 8.1320 -3.0796 2.4160 40 1 7.3345 -3.6719 3.8990 41 1 5.9268 -4.9815 -1.1488 42 1 4.6410 -5.0489 0.1027 43 1 7.3060 -6.4828 0.0158 44 1 5.7777 -6.9965 0.7829 45 1 8.1260 -9.0804 1.2261 46 1 1.6551 -2.1307 -0.0054 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049313740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:56 Heat of formation + Delta-G solvation = 32.484908 kcal Electronic energy + Delta-G solvation = -26867.321155 eV Core-core repulsion = 23336.840227 eV Total energy + Delta-G solvation = -3530.480928 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.70098 -39.14661 -37.50170 -35.51077 -33.22643 -32.59511 -32.06541 -31.16297 -28.88047 -28.30874 -27.06650 -25.22515 -24.44821 -23.05200 -22.02582 -21.36393 -20.81533 -19.63503 -18.95149 -16.86502 -16.62941 -16.25167 -15.82669 -15.32477 -15.03769 -14.66413 -14.49488 -14.20287 -14.05256 -13.89850 -13.59572 -13.35123 -13.22472 -12.91242 -12.47142 -12.42604 -12.22779 -12.17255 -11.97567 -11.59006 -11.51172 -11.30658 -11.03994 -10.84911 -10.66613 -10.50003 -10.42113 -10.05924 -9.97164 -9.82055 -9.59207 -9.17706 -8.97294 -8.80250 -8.54842 -8.21974 -6.80052 -5.67625 -3.01833 0.82452 1.15241 2.87473 3.13543 3.41522 3.46545 3.49283 3.66713 4.43149 4.51547 4.57662 4.65735 4.83470 4.89408 5.06545 5.09566 5.18366 5.26257 5.35760 5.37097 5.41029 5.45612 5.52802 5.62759 5.66459 5.76171 5.79277 5.86487 5.89645 6.02024 6.09282 6.16383 6.19647 6.28074 6.31338 6.33981 6.42282 6.58808 6.70500 6.74893 6.82056 6.93457 7.22086 7.61284 7.67412 7.72352 7.87204 8.27583 8.41041 9.21906 9.85767 10.54276 11.44457 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027077 B = 0.003333 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.840154 B = 8399.791681 C = 8904.821857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.104 4.104 4 C -0.125 4.125 5 C -0.099 4.099 6 C -0.118 4.118 7 C 0.558 3.442 8 O -0.526 6.526 9 N -0.593 5.593 10 C 0.099 3.901 11 C -0.130 4.130 12 C -0.115 4.115 13 C 0.159 3.841 14 H 0.017 0.983 15 C 0.116 3.884 16 H 0.080 0.920 17 C -0.134 4.134 18 C 0.173 3.827 19 N -0.593 5.593 20 C -0.225 4.225 21 H 0.079 0.921 22 C -0.008 4.008 23 N -0.919 5.919 24 Si 0.910 3.090 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.067 4.067 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.056 0.944 44 H 0.039 0.961 45 H 0.252 0.748 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.531 21.427 -1.747 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.122 4.122 4 C -0.143 4.143 5 C -0.118 4.118 6 C -0.121 4.121 7 C 0.346 3.654 8 O -0.403 6.403 9 N -0.325 5.325 10 C -0.023 4.023 11 C -0.169 4.169 12 C -0.154 4.154 13 C 0.050 3.950 14 H 0.034 0.966 15 C 0.012 3.988 16 H 0.098 0.902 17 C -0.173 4.173 18 C 0.048 3.952 19 N -0.317 5.317 20 C -0.353 4.353 21 H 0.097 0.903 22 C -0.204 4.204 23 N -0.567 5.567 24 Si 0.741 3.259 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.086 4.086 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.105 0.895 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.655 20.671 -2.059 22.907 hybrid contribution 0.750 -0.466 0.670 1.108 sum -8.905 20.205 -1.389 22.124 Atomic orbital electron populations 1.20800 0.90789 1.02985 1.02514 1.19885 0.96377 0.92817 1.00364 1.21188 0.94314 0.97515 0.99210 1.21079 0.94242 0.97904 1.01031 1.21504 1.00381 0.91576 0.98323 1.20078 0.94343 0.93523 1.04137 1.18278 0.80295 0.87397 0.79412 1.90779 1.67329 1.38219 1.44009 1.47885 1.21584 1.17831 1.45184 1.22119 0.99569 0.89680 0.90954 1.21916 1.00799 0.98403 0.95737 1.21429 0.98512 0.94015 1.01442 1.20652 0.95605 0.86547 0.92227 0.96590 1.22336 0.92799 0.83979 0.99700 0.90240 1.23028 1.01718 0.93881 0.98633 1.21741 0.96395 0.91799 0.85247 1.44094 1.58160 1.09891 1.19579 1.19035 1.22150 0.96119 0.98043 0.90317 1.24808 1.00849 0.97207 0.97576 1.69961 1.48901 1.14150 1.23642 0.86073 0.79997 0.79724 0.80131 1.20550 1.21807 1.21801 1.21124 0.92551 0.98307 0.96628 0.91018 0.91462 0.91251 0.85851 0.85503 0.84959 0.91482 0.89254 0.90880 0.91833 0.91758 0.91443 0.92176 0.89473 0.92590 0.94261 0.93791 0.85068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.01 0.36 -0.47 16 2 C -0.09 -0.92 5.87 -104.68 -0.61 -1.54 16 3 C -0.10 -0.89 9.69 -39.49 -0.38 -1.27 16 4 C -0.12 -1.07 10.03 -39.64 -0.40 -1.47 16 5 C -0.10 -1.04 7.43 -39.19 -0.29 -1.33 16 6 C -0.12 -1.57 5.32 -104.97 -0.56 -2.13 16 7 C 0.56 9.37 7.40 -12.33 -0.09 9.28 16 8 O -0.53 -10.62 13.57 5.32 0.07 -10.55 16 9 N -0.59 -9.56 2.92 -165.47 -0.48 -10.04 16 10 C 0.10 1.21 4.80 -3.44 -0.02 1.19 16 11 C -0.13 -1.68 5.92 -26.42 -0.16 -1.84 16 12 C -0.12 -1.99 5.45 -27.24 -0.15 -2.14 16 13 C 0.16 3.37 2.58 -68.64 -0.18 3.20 16 14 H 0.02 0.38 8.04 -51.93 -0.42 -0.03 16 15 C 0.12 2.25 3.28 -67.13 -0.22 2.03 16 16 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 17 C -0.13 -2.92 5.13 -25.24 -0.13 -3.05 16 18 C 0.17 4.43 5.47 -1.68 -0.01 4.43 16 19 N -0.59 -15.39 3.35 -163.60 -0.55 -15.93 16 20 C -0.23 -6.27 9.94 -15.06 -0.15 -6.42 16 21 H 0.08 2.10 7.31 -52.49 -0.38 1.72 16 22 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 23 N -0.92 -27.46 10.46 55.49 0.58 -26.88 16 24 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 C -0.07 -0.83 9.26 -39.19 -0.36 -1.19 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.13 1.22 6.13 -52.48 -0.32 0.90 16 35 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 36 H 0.09 0.93 4.70 -51.93 -0.24 0.68 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 40 H 0.07 1.22 7.70 -51.93 -0.40 0.82 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.09 2.00 6.02 -51.93 -0.31 1.69 16 43 H 0.06 1.56 7.19 -51.93 -0.37 1.18 16 44 H 0.04 1.11 7.81 -51.93 -0.41 0.70 16 45 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.13 1.67 8.01 -52.49 -0.42 1.25 16 LS Contribution 354.63 15.07 5.34 5.34 Total: -1.00 -32.77 354.63 -10.55 -43.32 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.05 Total: 0.55 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -3.44 Total: -3.03 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.45 Total: -52.86 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.55 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.77 -10.55 -43.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049313740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.803 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds