Wall clock time and date at job start Tue Mar 31 2020 10:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38381 * 119.92896 * 2 1 4 4 C 1.38341 * 120.29407 * 180.02562 * 3 2 1 5 5 C 1.37975 * 120.14185 * 359.97438 * 4 3 2 6 6 C 1.39557 * 119.85659 * 0.02562 * 5 4 3 7 7 C 1.47842 * 120.14821 * 179.97438 * 6 5 4 8 8 O 1.21555 * 120.00338 * 215.79943 * 7 6 5 9 9 N 1.34776 * 119.99973 * 35.79009 * 7 6 5 10 10 C 1.47863 * 122.22603 * 5.73172 * 9 7 6 11 11 C 1.52716 * 111.05456 * 127.50494 * 10 9 7 12 12 C 1.53868 * 111.52481 * 48.54422 * 11 10 9 13 13 C 1.51085 * 107.34159 * 303.06506 * 12 11 10 14 14 H 1.08997 * 108.73421 * 309.15495 * 13 12 11 15 15 C 1.45726 * 122.23003 * 185.44086 * 9 7 6 16 16 H 1.09000 * 111.06819 * 119.47797 * 15 9 7 17 17 C 1.53333 * 116.42963 * 350.63352 * 15 9 7 18 18 C 1.55478 * 101.58302 * 206.93103 * 17 15 9 19 19 N 1.45020 * 119.19503 * 183.88799 * 13 12 11 20 20 C 1.36938 * 126.56473 * 28.73975 * 19 13 12 21 21 H 1.07998 * 119.99678 * 0.02562 * 20 19 13 22 22 C 1.38816 * 120.00173 * 179.97438 * 20 19 13 23 23 N 1.31613 * 119.99823 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99896 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47501 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47220 * 120.00265 * 24 22 20 27 27 H 1.48499 * 109.47474 * 240.00480 * 24 22 20 28 28 C 1.37931 * 119.92707 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47259 * 269.99844 * 1 2 3 30 30 H 1.09004 * 109.47065 * 30.00137 * 1 2 3 31 31 H 1.08998 * 109.47231 * 149.99961 * 1 2 3 32 32 H 1.08002 * 119.85442 * 359.97429 * 3 2 1 33 33 H 1.07999 * 119.92827 * 180.02562 * 4 3 2 34 34 H 1.08007 * 120.07246 * 180.02562 * 5 4 3 35 35 H 1.08992 * 109.15754 * 247.91524 * 10 9 7 36 36 H 1.09002 * 109.15904 * 7.15277 * 10 9 7 37 37 H 1.08998 * 109.06461 * 169.06392 * 11 10 9 38 38 H 1.08999 * 109.07165 * 288.00943 * 11 10 9 39 39 H 1.08997 * 109.88352 * 62.52009 * 12 11 10 40 40 H 1.08998 * 109.88325 * 183.60859 * 12 11 10 41 41 H 1.08996 * 111.21599 * 88.78628 * 17 15 9 42 42 H 1.08996 * 110.84533 * 324.91385 * 17 15 9 43 43 H 1.08996 * 109.96204 * 263.00747 * 18 17 15 44 44 H 1.08997 * 109.95954 * 141.76523 * 18 17 15 45 45 H 0.97004 * 120.00027 * 180.02562 * 23 22 20 46 46 H 1.08000 * 120.07187 * 0.27014 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2081 -0.0005 5 6 4.2812 0.0193 -0.0005 6 6 3.5911 -1.1937 -0.0005 7 6 4.3351 -2.4712 -0.0011 8 8 3.9030 -3.4260 -0.6169 9 7 5.4927 -2.5772 0.6810 10 6 6.0007 -1.4907 1.5457 11 6 6.3237 -2.0089 2.9454 12 6 7.1737 -3.2903 2.8907 13 6 6.4077 -4.3044 2.0737 14 1 5.3922 -4.3730 2.4636 15 6 6.3238 -3.7727 0.6204 16 1 7.3135 -3.5423 0.2261 17 6 5.7142 -4.9930 -0.0798 18 6 6.4602 -6.1617 0.6237 19 7 6.9417 -5.6449 1.9288 20 6 7.7384 -6.3070 2.8244 21 1 8.0270 -5.8271 3.7479 22 6 8.1741 -7.5952 2.5458 23 7 7.8219 -8.1801 1.4206 24 14 9.2614 -8.4979 3.7673 25 1 9.5122 -7.6278 4.9443 26 1 8.5827 -9.7429 4.2084 27 1 10.5535 -8.8410 3.1207 28 6 2.1951 -1.1954 -0.0005 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6539 2.1326 -0.0004 33 1 4.1136 2.1475 -0.0001 34 1 5.3613 0.0275 -0.0005 35 1 6.9041 -1.0728 1.1015 36 1 5.2443 -0.7093 1.6200 37 1 6.8717 -1.2412 3.4917 38 1 5.3923 -2.2215 3.4702 39 1 8.1320 -3.0796 2.4160 40 1 7.3345 -3.6719 3.8990 41 1 5.9268 -4.9815 -1.1488 42 1 4.6410 -5.0489 0.1027 43 1 7.3060 -6.4828 0.0158 44 1 5.7777 -6.9965 0.7829 45 1 8.1260 -9.0804 1.2261 46 1 1.6551 -2.1307 -0.0054 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049313740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:55 Heat of formation + Delta-G solvation = 13.334862 kcal Electronic energy + Delta-G solvation = -26868.151563 eV Core-core repulsion = 23336.840227 eV Total energy + Delta-G solvation = -3531.311336 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.97496 -40.22594 -38.88574 -37.04315 -34.47728 -34.10273 -33.43940 -32.12726 -30.71592 -29.79635 -27.80403 -26.64271 -26.31116 -24.18660 -23.04513 -22.58049 -22.37170 -21.38175 -20.19597 -18.63073 -17.63978 -17.29225 -17.25829 -16.79587 -16.54364 -16.08395 -15.70397 -15.51863 -15.47229 -14.93029 -14.78978 -14.53652 -14.30643 -14.13001 -14.09022 -13.87345 -13.43581 -13.19190 -13.04633 -12.99087 -12.81032 -12.76100 -12.52530 -12.29121 -12.06421 -12.00145 -11.83379 -11.79823 -11.73479 -11.58030 -11.45723 -10.80602 -10.43350 -9.91606 -9.62306 -9.55093 -8.93829 -7.85643 -5.23185 -0.02610 0.40533 1.44920 1.46742 1.56935 1.71618 1.92135 2.49197 2.81376 3.27319 3.32959 3.50865 3.86815 3.89222 3.97023 3.99800 4.01081 4.04669 4.18274 4.23401 4.30878 4.41197 4.44322 4.53032 4.55615 4.62402 4.69310 4.76928 4.84106 4.89009 4.92361 4.98649 5.01902 5.06671 5.11805 5.25790 5.28213 5.37604 5.43169 5.44511 5.47028 5.56459 5.58301 5.62093 5.70296 6.00304 6.15629 6.44502 7.03208 7.11999 7.73136 8.43560 9.26502 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027077 B = 0.003333 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.840154 B = 8399.791681 C = 8904.821857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.098 4.098 3 C -0.096 4.096 4 C -0.115 4.115 5 C -0.099 4.099 6 C -0.140 4.140 7 C 0.551 3.449 8 O -0.576 6.576 9 N -0.593 5.593 10 C 0.094 3.906 11 C -0.121 4.121 12 C -0.110 4.110 13 C 0.154 3.846 14 H -0.008 1.008 15 C 0.131 3.869 16 H 0.086 0.914 17 C -0.119 4.119 18 C 0.184 3.816 19 N -0.611 5.611 20 C -0.233 4.233 21 H 0.090 0.910 22 C -0.071 4.071 23 N -0.955 5.955 24 Si 0.981 3.019 25 H -0.260 1.260 26 H -0.296 1.296 27 H -0.291 1.291 28 C -0.091 4.091 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.149 0.851 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.028 0.972 44 H -0.002 1.002 45 H 0.246 0.754 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.127 26.394 -0.510 27.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.098 4.098 3 C -0.114 4.114 4 C -0.132 4.132 5 C -0.118 4.118 6 C -0.143 4.143 7 C 0.342 3.658 8 O -0.457 6.457 9 N -0.324 5.324 10 C -0.026 4.026 11 C -0.159 4.159 12 C -0.149 4.149 13 C 0.045 3.955 14 H 0.009 0.991 15 C 0.026 3.974 16 H 0.104 0.896 17 C -0.157 4.157 18 C 0.059 3.941 19 N -0.336 5.336 20 C -0.361 4.361 21 H 0.108 0.892 22 C -0.263 4.263 23 N -0.605 5.605 24 Si 0.809 3.191 25 H -0.184 1.184 26 H -0.224 1.224 27 H -0.218 1.218 28 C -0.110 4.110 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.175 0.825 33 H 0.182 0.818 34 H 0.166 0.834 35 H 0.114 0.886 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.055 0.945 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.254 25.712 -0.786 27.338 hybrid contribution 0.508 -1.948 0.276 2.032 sum -8.746 23.764 -0.511 25.327 Atomic orbital electron populations 1.20857 0.89255 1.03700 1.03277 1.20160 0.97621 0.92378 0.99608 1.21644 0.94720 0.98072 0.96920 1.21508 0.94390 0.98454 0.98881 1.21685 1.01226 0.90947 0.97903 1.19837 0.94412 0.92645 1.07411 1.18965 0.80115 0.88337 0.78403 1.90740 1.68478 1.40342 1.46102 1.47962 1.21190 1.17466 1.45786 1.22496 1.01540 0.88770 0.89820 1.21907 1.00109 0.97100 0.96787 1.21408 0.98991 0.94673 0.99806 1.20825 0.94712 0.85573 0.94350 0.99055 1.21941 0.93314 0.84601 0.97547 0.89645 1.22757 1.00269 0.94092 0.98591 1.21426 0.94660 0.92263 0.85767 1.44358 1.57900 1.12130 1.19229 1.19469 1.21570 0.96459 0.98641 0.89187 1.25733 1.02769 0.98267 0.99560 1.70194 1.50428 1.14121 1.25712 0.84963 0.77639 0.78110 0.78343 1.18429 1.22364 1.21807 1.21125 0.92557 0.98807 0.98492 0.90162 0.89296 0.92038 0.82479 0.81818 0.83380 0.88593 0.86583 0.86607 0.92573 0.91219 0.92433 0.91783 0.90950 0.95396 0.98398 0.94456 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 71.24 0.71 -0.70 16 2 C -0.10 -1.69 5.87 -19.90 -0.12 -1.81 16 3 C -0.10 -1.19 9.69 22.33 0.22 -0.97 16 4 C -0.11 -1.38 10.03 22.23 0.22 -1.15 16 5 C -0.10 -1.73 7.43 22.53 0.17 -1.56 16 6 C -0.14 -3.60 5.32 -20.09 -0.11 -3.71 16 7 C 0.55 18.83 7.40 86.79 0.64 19.47 16 8 O -0.58 -24.71 13.57 -3.89 -0.05 -24.76 16 9 N -0.59 -18.72 2.92 -795.69 -2.32 -21.05 16 10 C 0.09 1.97 4.80 86.02 0.41 2.38 16 11 C -0.12 -2.73 5.92 30.79 0.18 -2.55 16 12 C -0.11 -3.65 5.45 30.26 0.16 -3.49 16 13 C 0.15 6.66 2.58 45.32 0.12 6.78 16 14 H -0.01 -0.38 8.04 -2.39 -0.02 -0.40 16 15 C 0.13 5.18 3.28 45.93 0.15 5.33 16 16 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 17 C -0.12 -5.52 5.13 31.56 0.16 -5.35 16 18 C 0.18 10.19 5.47 86.87 0.48 10.66 16 19 N -0.61 -33.17 3.35 -671.50 -2.25 -35.42 16 20 C -0.23 -13.28 9.94 84.03 0.84 -12.44 16 21 H 0.09 4.81 7.31 -2.91 -0.02 4.79 16 22 C -0.07 -4.15 5.49 84.86 0.47 -3.68 16 23 N -0.96 -60.06 10.46 21.65 0.23 -59.84 16 24 Si 0.98 46.72 29.55 68.60 2.03 48.74 16 25 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 27 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 28 C -0.09 -2.23 9.26 22.53 0.21 -2.02 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 0.72 8.08 -2.38 -0.02 0.70 16 31 H 0.06 0.85 8.08 -2.39 -0.02 0.83 16 32 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 33 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 34 H 0.15 2.05 6.13 -2.91 -0.02 2.03 16 35 H 0.10 1.54 8.06 -2.39 -0.02 1.52 16 36 H 0.12 1.90 4.70 -2.39 -0.01 1.89 16 37 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 40 H 0.06 2.01 7.70 -2.39 -0.02 1.99 16 41 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 42 H 0.07 3.60 6.02 -2.39 -0.01 3.59 16 43 H 0.03 1.67 7.19 -2.39 -0.02 1.66 16 44 H 0.00 -0.14 7.81 -2.39 -0.02 -0.16 16 45 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 46 H 0.11 3.04 8.01 -2.91 -0.02 3.01 16 Total: -1.00 -78.30 354.63 3.51 -74.79 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.97 Total: 12.34 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 4.91 Total: 5.20 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -4.35 Total: -116.30 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.05 Total: -24.76 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Total: -78.30 3.51 -74.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049313740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.129 kcal (2) G-P(sol) polarization free energy of solvation -78.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds