Wall clock time and date at job start Tue Mar 31 2020 10:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38375 * 119.92889 * 2 1 4 4 C 1.38338 * 120.29454 * 180.02562 * 3 2 1 5 5 C 1.37974 * 120.14216 * 0.02562 * 4 3 2 6 6 C 1.39557 * 119.85536 * 359.97438 * 5 4 3 7 7 C 1.47843 * 120.14353 * 179.97438 * 6 5 4 8 8 O 1.21555 * 119.99754 * 186.97831 * 7 6 5 9 9 N 1.34778 * 120.00336 * 6.97098 * 7 6 5 10 10 C 1.47666 * 134.45769 * 177.45090 * 9 7 6 11 11 C 1.53512 * 85.97860 * 204.32075 * 10 9 7 12 12 C 1.47665 * 134.45713 * 357.46073 * 9 7 6 13 13 C 1.52670 * 113.56880 * 91.02086 * 11 10 9 14 14 C 1.53330 * 109.11211 * 73.80745 * 13 11 10 15 15 N 1.46885 * 108.76422 * 52.40366 * 14 13 11 16 16 C 1.36932 * 120.46817 * 124.44292 * 15 14 13 17 17 H 1.08004 * 120.00248 * 208.08320 * 16 15 14 18 18 C 1.38816 * 120.00334 * 28.08372 * 16 15 14 19 19 N 1.31614 * 120.00135 * 216.92020 * 18 16 15 20 20 Si 1.86800 * 119.99549 * 36.91111 * 18 16 15 21 21 H 1.48502 * 109.46808 * 95.50703 * 20 18 16 22 22 H 1.48498 * 109.47180 * 215.50343 * 20 18 16 23 23 H 1.48499 * 109.47590 * 335.50645 * 20 18 16 24 24 C 1.46894 * 119.06379 * 304.46531 * 15 14 13 25 25 C 1.52676 * 113.56009 * 222.23499 * 11 10 9 26 26 C 1.37940 * 119.92649 * 180.27906 * 2 1 3 27 27 H 1.09000 * 109.47670 * 90.00249 * 1 2 3 28 28 H 1.09004 * 109.47392 * 209.99982 * 1 2 3 29 29 H 1.09006 * 109.47411 * 330.00151 * 1 2 3 30 30 H 1.07999 * 119.85323 * 359.97438 * 3 2 1 31 31 H 1.07996 * 119.92784 * 179.97438 * 4 3 2 32 32 H 1.08004 * 120.07264 * 179.97438 * 5 4 3 33 33 H 1.09007 * 113.78909 * 90.05366 * 10 9 7 34 34 H 1.08997 * 113.79513 * 318.58927 * 10 9 7 35 35 H 1.09002 * 113.78725 * 41.40730 * 12 9 7 36 36 H 1.08999 * 113.79085 * 269.95026 * 12 9 7 37 37 H 1.09004 * 109.52632 * 193.69544 * 13 11 10 38 38 H 1.08994 * 109.53078 * 313.91278 * 13 11 10 39 39 H 1.09003 * 109.59093 * 172.18849 * 14 13 11 40 40 H 1.09004 * 109.58438 * 292.62367 * 14 13 11 41 41 H 0.97002 * 120.00163 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.58812 * 295.76599 * 24 15 14 43 43 H 1.08998 * 109.70852 * 175.39307 * 24 15 14 44 44 H 1.08997 * 109.53153 * 46.09237 * 25 11 10 45 45 H 1.08997 * 109.52529 * 166.31459 * 25 11 10 46 46 H 1.08004 * 120.07546 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1992 0.0000 4 6 3.5807 1.2080 -0.0005 5 6 4.2811 0.0193 -0.0016 6 6 3.5910 -1.1937 -0.0016 7 6 4.3351 -2.4712 -0.0033 8 8 3.7379 -3.5222 -0.1312 9 7 5.6756 -2.4705 0.1368 10 6 6.7066 -3.5239 0.2262 11 6 7.5543 -2.4803 0.9671 12 6 6.7018 -1.4162 0.2625 13 6 7.3692 -2.5077 2.4823 14 6 8.0808 -3.7403 3.0528 15 7 9.4681 -3.7505 2.5702 16 6 10.5110 -3.8025 3.4559 17 1 11.4655 -3.3713 3.1923 18 6 10.3416 -4.4094 4.6929 19 7 10.9301 -3.9081 5.7580 20 14 9.2782 -5.9376 4.8455 21 1 10.1372 -7.1471 4.7779 22 1 8.5596 -5.9128 6.1447 23 1 8.2926 -5.9678 3.7351 24 6 9.7208 -3.7037 1.1239 25 6 9.0203 -2.4706 0.5407 26 6 2.1951 -1.1955 -0.0058 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6538 2.1325 -0.0004 31 1 4.1135 2.1474 -0.0009 32 1 5.3611 0.0275 -0.0024 33 1 7.1180 -3.8196 -0.7390 34 1 6.4153 -4.3730 0.8444 35 1 6.4065 -0.5902 0.9096 36 1 7.1116 -1.0855 -0.6918 37 1 7.7978 -1.6052 2.9181 38 1 6.3064 -2.5585 2.7187 39 1 8.0731 -3.6953 4.1419 40 1 7.5709 -4.6439 2.7186 41 1 10.8121 -4.3324 6.6223 42 1 9.3257 -4.6046 0.6546 43 1 10.7930 -3.6359 0.9401 44 1 9.0835 -2.4960 -0.5471 45 1 9.5023 -1.5671 0.9139 46 1 1.6551 -2.1308 -0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050422331.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:38 Heat of formation + Delta-G solvation = 59.334436 kcal Electronic energy + Delta-G solvation = -26331.894711 eV Core-core repulsion = 22802.578066 eV Total energy + Delta-G solvation = -3529.316645 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.02190 -39.52514 -37.96472 -36.11298 -33.34559 -32.45122 -31.40588 -30.57684 -30.47519 -27.66138 -27.31160 -26.16256 -24.28268 -23.14610 -22.85106 -21.99785 -20.95136 -19.45349 -18.32732 -17.06377 -16.88828 -16.39245 -16.08813 -15.66021 -15.16543 -14.91942 -14.50122 -14.37474 -14.13362 -13.80271 -13.73964 -13.58111 -13.24358 -13.13746 -12.89527 -12.53966 -12.43971 -12.22364 -12.15487 -11.92738 -11.78411 -11.68157 -11.57782 -11.21332 -10.73132 -10.63202 -10.34745 -10.14468 -10.03294 -9.90486 -9.54119 -9.42038 -9.21093 -8.97392 -8.64498 -8.41070 -6.98098 -6.06602 -3.25089 0.67663 1.10541 2.74113 2.79860 3.40660 3.52876 3.58235 3.67100 4.24424 4.39275 4.51182 4.57408 4.60301 4.81942 4.87409 4.96973 5.00876 5.01762 5.13989 5.22374 5.28658 5.30658 5.36484 5.39460 5.42751 5.49270 5.65503 5.72171 5.75806 5.85013 5.87079 5.94424 6.06596 6.11885 6.15642 6.19508 6.27228 6.32556 6.37430 6.45946 6.62905 6.65857 6.70816 6.78804 6.97508 7.68959 7.95830 8.13686 8.29714 8.95619 9.72736 10.14266 11.08198 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.021456 B = 0.003180 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.695110 B = 8802.631079 C = 9001.783365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.098 4.098 3 C -0.099 4.099 4 C -0.125 4.125 5 C -0.108 4.108 6 C -0.121 4.121 7 C 0.576 3.424 8 O -0.544 6.544 9 N -0.633 5.633 10 C 0.117 3.883 11 C -0.075 4.075 12 C 0.094 3.906 13 C -0.112 4.112 14 C 0.147 3.853 15 N -0.599 5.599 16 C -0.274 4.274 17 H 0.080 0.920 18 C 0.041 3.959 19 N -0.881 5.881 20 Si 0.833 3.167 21 H -0.293 1.293 22 H -0.295 1.295 23 H -0.257 1.257 24 C 0.146 3.854 25 C -0.120 4.120 26 C -0.064 4.064 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.143 0.857 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.027 0.973 41 H 0.262 0.738 42 H 0.021 0.979 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.070 0.930 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.376 11.522 -13.791 23.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.098 4.098 3 C -0.118 4.118 4 C -0.143 4.143 5 C -0.126 4.126 6 C -0.124 4.124 7 C 0.367 3.633 8 O -0.423 6.423 9 N -0.367 5.367 10 C -0.005 4.005 11 C -0.076 4.076 12 C -0.029 4.029 13 C -0.152 4.152 14 C 0.021 3.979 15 N -0.322 5.322 16 C -0.401 4.401 17 H 0.097 0.903 18 C -0.161 4.161 19 N -0.521 5.521 20 Si 0.660 3.340 21 H -0.220 1.220 22 H -0.222 1.222 23 H -0.181 1.181 24 C 0.020 3.980 25 C -0.159 4.159 26 C -0.083 4.083 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.160 0.840 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.039 0.961 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.844 10.943 -13.689 23.626 hybrid contribution -0.530 -0.893 0.216 1.061 sum -16.374 10.050 -13.473 23.465 Atomic orbital electron populations 1.20795 0.90714 1.03035 1.02492 1.19895 0.96428 0.92795 1.00648 1.21246 0.94397 0.97583 0.98534 1.21132 0.94234 0.98097 1.00791 1.22055 1.01444 0.91711 0.97398 1.19919 0.94118 0.92970 1.05400 1.17955 0.80418 0.88709 0.76243 1.90762 1.67645 1.33170 1.50728 1.49883 1.03744 1.11438 1.71628 1.23322 0.84108 0.93177 0.99878 1.22019 0.94991 0.93902 0.96673 1.23679 0.85673 0.93240 1.00273 1.21843 0.99623 1.01957 0.91732 1.21279 0.84926 0.93556 0.98174 1.44294 1.01554 1.85585 1.00738 1.18741 0.93544 1.32666 0.95144 0.90259 1.25240 0.96999 0.98635 0.95204 1.70117 1.45919 1.37606 0.98413 0.87588 0.81231 0.87641 0.77543 1.22039 1.22182 1.18125 1.20932 0.98425 0.93650 0.84966 1.21943 0.93292 1.01733 0.98954 1.21164 0.92656 0.98373 0.96103 0.91044 0.91275 0.91376 0.85732 0.85377 0.83986 0.89729 0.89841 0.89291 0.89295 0.91031 0.92736 0.91425 0.95553 0.92800 0.96107 0.91768 0.92316 0.91102 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.00 0.36 -0.43 16 2 C -0.10 -0.94 5.87 -104.68 -0.61 -1.56 16 3 C -0.10 -0.86 9.69 -39.49 -0.38 -1.24 16 4 C -0.12 -1.11 10.03 -39.64 -0.40 -1.50 16 5 C -0.11 -1.15 9.14 -39.19 -0.36 -1.51 16 6 C -0.12 -1.59 5.87 -104.97 -0.62 -2.20 16 7 C 0.58 9.07 7.99 -12.33 -0.10 8.97 16 8 O -0.54 -10.41 17.10 5.32 0.09 -10.32 16 9 N -0.63 -8.90 3.44 -181.34 -0.62 -9.52 16 10 C 0.12 1.68 7.62 -3.15 -0.02 1.65 16 11 C -0.07 -1.05 0.77 -154.42 -0.12 -1.17 16 12 C 0.09 1.05 5.68 -3.16 -0.02 1.03 16 13 C -0.11 -1.89 5.21 -26.73 -0.14 -2.03 16 14 C 0.15 3.08 4.27 -3.66 -0.02 3.07 16 15 N -0.60 -13.46 2.68 -172.20 -0.46 -13.92 16 16 C -0.27 -7.34 9.81 -15.06 -0.15 -7.49 16 17 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 18 C 0.04 1.14 4.79 -17.43 -0.08 1.06 16 19 N -0.88 -26.22 13.97 55.49 0.78 -25.45 16 20 Si 0.83 21.11 26.52 -169.99 -4.51 16.60 16 21 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 22 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 23 H -0.26 -6.22 5.06 56.52 0.29 -5.93 16 24 C 0.15 2.63 6.38 -3.65 -0.02 2.61 16 25 C -0.12 -1.68 5.26 -26.72 -0.14 -1.82 16 26 C -0.06 -0.77 9.24 -39.19 -0.36 -1.14 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 29 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.14 1.32 3.75 -52.48 -0.20 1.12 16 33 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 34 H 0.08 1.36 7.41 -51.93 -0.38 0.97 16 35 H 0.09 0.91 6.19 -51.93 -0.32 0.58 16 36 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.05 0.89 8.01 -51.93 -0.42 0.48 16 39 H 0.07 1.58 5.72 -51.93 -0.30 1.28 16 40 H 0.03 0.57 6.14 -51.93 -0.32 0.25 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.02 0.37 8.07 -51.93 -0.42 -0.05 16 43 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 44 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.13 1.64 7.67 -52.48 -0.40 1.24 16 LS Contribution 358.89 15.07 5.41 5.41 Total: -1.00 -32.62 358.89 -9.56 -42.18 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -7.06 Total: -1.29 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -3.18 Total: -3.69 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: -0.31 Total: -48.89 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.51 Total: 16.60 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.62 -9.56 -42.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050422331.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.512 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds