Wall clock time and date at job start Tue Mar 31 2020 10:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38375 * 119.92889 * 2 1 4 4 C 1.38338 * 120.29454 * 180.02562 * 3 2 1 5 5 C 1.37974 * 120.14216 * 0.02562 * 4 3 2 6 6 C 1.39557 * 119.85536 * 359.97438 * 5 4 3 7 7 C 1.47843 * 120.14353 * 179.97438 * 6 5 4 8 8 O 1.21555 * 119.99754 * 186.97831 * 7 6 5 9 9 N 1.34778 * 120.00336 * 6.97098 * 7 6 5 10 10 C 1.47666 * 134.45769 * 177.45090 * 9 7 6 11 11 C 1.53512 * 85.97860 * 204.32075 * 10 9 7 12 12 C 1.47665 * 134.45713 * 357.46073 * 9 7 6 13 13 C 1.52670 * 113.56880 * 91.02086 * 11 10 9 14 14 C 1.53330 * 109.11211 * 73.80745 * 13 11 10 15 15 N 1.46885 * 108.76422 * 52.40366 * 14 13 11 16 16 C 1.36932 * 120.46817 * 124.44292 * 15 14 13 17 17 H 1.08004 * 120.00248 * 208.08320 * 16 15 14 18 18 C 1.38816 * 120.00334 * 28.08372 * 16 15 14 19 19 N 1.31614 * 120.00135 * 216.92020 * 18 16 15 20 20 Si 1.86800 * 119.99549 * 36.91111 * 18 16 15 21 21 H 1.48502 * 109.46808 * 95.50703 * 20 18 16 22 22 H 1.48498 * 109.47180 * 215.50343 * 20 18 16 23 23 H 1.48499 * 109.47590 * 335.50645 * 20 18 16 24 24 C 1.46894 * 119.06379 * 304.46531 * 15 14 13 25 25 C 1.52676 * 113.56009 * 222.23499 * 11 10 9 26 26 C 1.37940 * 119.92649 * 180.27906 * 2 1 3 27 27 H 1.09000 * 109.47670 * 90.00249 * 1 2 3 28 28 H 1.09004 * 109.47392 * 209.99982 * 1 2 3 29 29 H 1.09006 * 109.47411 * 330.00151 * 1 2 3 30 30 H 1.07999 * 119.85323 * 359.97438 * 3 2 1 31 31 H 1.07996 * 119.92784 * 179.97438 * 4 3 2 32 32 H 1.08004 * 120.07264 * 179.97438 * 5 4 3 33 33 H 1.09007 * 113.78909 * 90.05366 * 10 9 7 34 34 H 1.08997 * 113.79513 * 318.58927 * 10 9 7 35 35 H 1.09002 * 113.78725 * 41.40730 * 12 9 7 36 36 H 1.08999 * 113.79085 * 269.95026 * 12 9 7 37 37 H 1.09004 * 109.52632 * 193.69544 * 13 11 10 38 38 H 1.08994 * 109.53078 * 313.91278 * 13 11 10 39 39 H 1.09003 * 109.59093 * 172.18849 * 14 13 11 40 40 H 1.09004 * 109.58438 * 292.62367 * 14 13 11 41 41 H 0.97002 * 120.00163 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.58812 * 295.76599 * 24 15 14 43 43 H 1.08998 * 109.70852 * 175.39307 * 24 15 14 44 44 H 1.08997 * 109.53153 * 46.09237 * 25 11 10 45 45 H 1.08997 * 109.52529 * 166.31459 * 25 11 10 46 46 H 1.08004 * 120.07546 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1992 0.0000 4 6 3.5807 1.2080 -0.0005 5 6 4.2811 0.0193 -0.0016 6 6 3.5910 -1.1937 -0.0016 7 6 4.3351 -2.4712 -0.0033 8 8 3.7379 -3.5222 -0.1312 9 7 5.6756 -2.4705 0.1368 10 6 6.7066 -3.5239 0.2262 11 6 7.5543 -2.4803 0.9671 12 6 6.7018 -1.4162 0.2625 13 6 7.3692 -2.5077 2.4823 14 6 8.0808 -3.7403 3.0528 15 7 9.4681 -3.7505 2.5702 16 6 10.5110 -3.8025 3.4559 17 1 11.4655 -3.3713 3.1923 18 6 10.3416 -4.4094 4.6929 19 7 10.9301 -3.9081 5.7580 20 14 9.2782 -5.9376 4.8455 21 1 10.1372 -7.1471 4.7779 22 1 8.5596 -5.9128 6.1447 23 1 8.2926 -5.9678 3.7351 24 6 9.7208 -3.7037 1.1239 25 6 9.0203 -2.4706 0.5407 26 6 2.1951 -1.1955 -0.0058 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6538 2.1325 -0.0004 31 1 4.1135 2.1474 -0.0009 32 1 5.3611 0.0275 -0.0024 33 1 7.1180 -3.8196 -0.7390 34 1 6.4153 -4.3730 0.8444 35 1 6.4065 -0.5902 0.9096 36 1 7.1116 -1.0855 -0.6918 37 1 7.7978 -1.6052 2.9181 38 1 6.3064 -2.5585 2.7187 39 1 8.0731 -3.6953 4.1419 40 1 7.5709 -4.6439 2.7186 41 1 10.8121 -4.3324 6.6223 42 1 9.3257 -4.6046 0.6546 43 1 10.7930 -3.6359 0.9401 44 1 9.0835 -2.4960 -0.5471 45 1 9.5023 -1.5671 0.9139 46 1 1.6551 -2.1308 -0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050422331.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:37 Heat of formation + Delta-G solvation = 39.894560 kcal Electronic energy + Delta-G solvation = -26332.737687 eV Core-core repulsion = 22802.578066 eV Total energy + Delta-G solvation = -3530.159622 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.12117 -40.44800 -39.08964 -37.66720 -34.51210 -33.87099 -32.46288 -31.95817 -31.87753 -28.82626 -28.27930 -27.05893 -25.90769 -24.35315 -24.17697 -22.84620 -22.38059 -20.47713 -19.75237 -18.42846 -17.90903 -17.72509 -17.18625 -16.91003 -16.58635 -15.96993 -15.86837 -15.42962 -15.30148 -15.14317 -14.95650 -14.68551 -14.52920 -14.28090 -14.13288 -13.85954 -13.50985 -13.40755 -13.18362 -13.08875 -13.04608 -12.85318 -12.67298 -12.48190 -12.23776 -12.14013 -11.98051 -11.52657 -11.49215 -11.29270 -11.27303 -10.75789 -10.48902 -10.05927 -9.73172 -9.65258 -8.87924 -8.23445 -5.35998 -0.15499 0.37053 1.33194 1.43513 1.50192 1.71555 1.79374 2.45620 2.83785 2.93823 3.26276 3.32713 3.50201 3.78218 3.80560 3.95287 3.97407 4.09503 4.17175 4.31781 4.37270 4.40255 4.41366 4.48098 4.52299 4.58787 4.65142 4.74375 4.80516 4.83526 4.84380 4.90506 4.95762 4.97031 5.04368 5.06689 5.22630 5.24790 5.27718 5.32038 5.35996 5.41865 5.55827 5.58780 5.91209 5.95859 6.15457 6.61014 6.97712 7.00757 7.69896 8.13423 8.95121 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.021456 B = 0.003180 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.695110 B = 8802.631079 C = 9001.783365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.101 4.101 3 C -0.094 4.094 4 C -0.121 4.121 5 C -0.110 4.110 6 C -0.146 4.146 7 C 0.568 3.432 8 O -0.596 6.596 9 N -0.635 5.635 10 C 0.112 3.888 11 C -0.075 4.075 12 C 0.108 3.892 13 C -0.101 4.101 14 C 0.145 3.855 15 N -0.611 5.611 16 C -0.254 4.254 17 H 0.055 0.945 18 C -0.010 4.010 19 N -0.928 5.928 20 Si 0.887 3.113 21 H -0.300 1.300 22 H -0.302 1.302 23 H -0.243 1.243 24 C 0.137 3.863 25 C -0.105 4.105 26 C -0.087 4.087 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.157 0.843 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.108 0.892 34 H 0.055 0.945 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.037 0.963 40 H 0.022 0.978 41 H 0.260 0.740 42 H 0.030 0.970 43 H 0.060 0.940 44 H 0.100 0.900 45 H 0.071 0.929 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.537 14.382 -16.279 27.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.101 4.101 3 C -0.112 4.112 4 C -0.139 4.139 5 C -0.128 4.128 6 C -0.149 4.149 7 C 0.360 3.640 8 O -0.479 6.479 9 N -0.367 5.367 10 C -0.010 4.010 11 C -0.076 4.076 12 C -0.012 4.012 13 C -0.140 4.140 14 C 0.019 3.981 15 N -0.335 5.335 16 C -0.383 4.383 17 H 0.073 0.927 18 C -0.208 4.208 19 N -0.571 5.571 20 Si 0.715 3.285 21 H -0.229 1.229 22 H -0.229 1.229 23 H -0.167 1.167 24 C 0.012 3.988 25 C -0.144 4.144 26 C -0.107 4.107 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.174 0.826 31 H 0.179 0.821 32 H 0.174 0.826 33 H 0.126 0.874 34 H 0.074 0.926 35 H 0.123 0.877 36 H 0.145 0.855 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.040 0.960 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.079 0.921 44 H 0.119 0.881 45 H 0.089 0.911 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.009 13.820 -16.224 27.267 hybrid contribution -0.164 -1.719 0.938 1.966 sum -17.173 12.101 -15.285 25.980 Atomic orbital electron populations 1.20854 0.89034 1.03767 1.03345 1.20199 0.97781 0.92357 0.99796 1.21681 0.94721 0.98244 0.96582 1.21547 0.94541 0.98660 0.99143 1.22220 1.02183 0.91255 0.97137 1.19863 0.94378 0.92651 1.08009 1.18485 0.80867 0.89161 0.75467 1.90719 1.68731 1.35071 1.53330 1.49973 1.03631 1.12395 1.70719 1.23397 0.84416 0.92619 1.00607 1.21886 0.95555 0.95616 0.94525 1.23846 0.83274 0.92189 1.01918 1.21632 0.98899 0.99376 0.94101 1.21205 0.84705 0.95491 0.96684 1.44444 1.00989 1.85718 1.02332 1.18754 0.93716 1.30396 0.95456 0.92692 1.25681 0.98996 1.00806 0.95324 1.70187 1.49000 1.39094 0.98852 0.86729 0.79955 0.84363 0.77477 1.22861 1.22913 1.16721 1.21190 0.99093 0.96221 0.82262 1.21817 0.92194 0.99243 1.01167 1.21208 0.92763 0.98869 0.97812 0.90058 0.91795 0.89424 0.82552 0.82138 0.82583 0.87435 0.92594 0.87697 0.85470 0.91231 0.92586 0.94437 0.96047 0.93048 0.95150 0.92105 0.88142 0.91076 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 71.23 0.71 -0.64 16 2 C -0.10 -1.76 5.87 -19.90 -0.12 -1.88 16 3 C -0.09 -1.26 9.69 22.33 0.22 -1.04 16 4 C -0.12 -1.63 10.03 22.23 0.22 -1.41 16 5 C -0.11 -1.99 9.14 22.53 0.21 -1.78 16 6 C -0.15 -3.68 5.87 -20.09 -0.12 -3.80 16 7 C 0.57 17.74 7.99 86.79 0.69 18.44 16 8 O -0.60 -23.67 17.10 -3.89 -0.07 -23.74 16 9 N -0.63 -16.59 3.44 -845.92 -2.91 -19.50 16 10 C 0.11 2.98 7.62 86.32 0.66 3.64 16 11 C -0.07 -1.87 0.77 -52.03 -0.04 -1.91 16 12 C 0.11 1.97 5.68 86.31 0.49 2.46 16 13 C -0.10 -3.28 5.21 30.60 0.16 -3.12 16 14 C 0.14 6.08 4.27 86.42 0.37 6.44 16 15 N -0.61 -27.21 2.68 -698.73 -1.87 -29.08 16 16 C -0.25 -13.84 9.81 84.04 0.82 -13.01 16 17 H 0.06 3.22 8.06 -2.91 -0.02 3.20 16 18 C -0.01 -0.60 4.79 84.86 0.41 -0.19 16 19 N -0.93 -57.07 13.97 21.65 0.30 -56.77 16 20 Si 0.89 45.06 26.52 68.60 1.82 46.88 16 21 H -0.30 -15.48 7.11 99.48 0.71 -14.77 16 22 H -0.30 -15.55 7.11 99.48 0.71 -14.84 16 23 H -0.24 -11.65 5.06 99.48 0.50 -11.14 16 24 C 0.14 4.65 6.38 86.42 0.55 5.20 16 25 C -0.11 -2.55 5.26 30.60 0.16 -2.38 16 26 C -0.09 -2.11 9.24 22.53 0.21 -1.90 16 27 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.82 8.09 -2.39 -0.02 0.80 16 29 H 0.09 0.70 8.08 -2.38 -0.02 0.68 16 30 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 31 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 32 H 0.16 2.21 3.75 -2.91 -0.01 2.19 16 33 H 0.11 2.39 8.07 -2.38 -0.02 2.37 16 34 H 0.06 1.81 7.41 -2.39 -0.02 1.79 16 35 H 0.11 1.64 6.19 -2.39 -0.01 1.63 16 36 H 0.13 1.48 8.09 -2.39 -0.02 1.46 16 37 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.06 1.80 8.01 -2.39 -0.02 1.78 16 39 H 0.04 1.78 5.72 -2.39 -0.01 1.77 16 40 H 0.02 0.93 6.14 -2.39 -0.01 0.91 16 41 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 42 H 0.03 0.99 8.07 -2.39 -0.02 0.98 16 43 H 0.06 2.10 7.93 -2.39 -0.02 2.08 16 44 H 0.10 1.70 8.12 -2.39 -0.02 1.68 16 45 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.11 3.06 7.67 -2.91 -0.02 3.04 16 Total: -1.00 -75.58 358.89 3.65 -71.94 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: 0.77 Total: 7.15 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 5.61 Total: 3.12 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -4.48 Total: -105.35 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.07 Total: -23.74 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.82 Total: 46.88 kcal Total: -75.58 3.65 -71.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050422331.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.830 kcal (2) G-P(sol) polarization free energy of solvation -75.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds