Wall clock time and date at job start Tue Mar 31 2020 10:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38363 * 119.85352 * 2 1 4 4 C 1.37953 * 120.14617 * 180.02562 * 3 2 1 5 5 C 1.39578 * 119.85362 * 0.02562 * 4 3 2 6 6 C 1.47844 * 120.14393 * 179.97438 * 5 4 3 7 7 O 1.21552 * 120.00141 * 6.95321 * 6 5 4 8 8 N 1.34783 * 119.99605 * 186.95887 * 6 5 4 9 9 C 1.47662 * 134.45291 * 185.02473 * 8 6 5 10 10 C 1.53507 * 85.97691 * 204.29323 * 9 8 6 11 11 C 1.47663 * 134.45901 * 4.98887 * 8 6 5 12 12 C 1.52671 * 113.57798 * 91.01356 * 10 9 8 13 13 C 1.53339 * 109.11341 * 73.81533 * 12 10 9 14 14 N 1.46887 * 108.76241 * 52.40557 * 13 12 10 15 15 C 1.36931 * 120.46340 * 124.47277 * 14 13 12 16 16 H 1.08005 * 120.00142 * 326.05098 * 15 14 13 17 17 C 1.38808 * 119.99817 * 145.77829 * 15 14 13 18 18 N 1.31620 * 120.00103 * 347.76085 * 17 15 14 19 19 Si 1.86795 * 120.00032 * 167.76096 * 17 15 14 20 20 H 1.48500 * 109.47526 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47462 * 120.00082 * 19 17 15 22 22 H 1.48502 * 109.47342 * 239.99691 * 19 17 15 23 23 C 1.46879 * 119.06640 * 304.74943 * 14 13 12 24 24 C 1.52670 * 113.56553 * 222.23096 * 10 9 8 25 25 C 1.39580 * 119.70960 * 0.25030 * 5 4 3 26 26 C 1.37956 * 119.85171 * 359.47389 * 25 5 4 27 27 H 1.09003 * 109.47122 * 90.00031 * 1 2 3 28 28 H 1.08999 * 109.47063 * 209.99463 * 1 2 3 29 29 H 1.09000 * 109.46778 * 329.99603 * 1 2 3 30 30 H 1.08008 * 119.92379 * 0.02562 * 3 2 1 31 31 H 1.08004 * 120.07495 * 180.02562 * 4 3 2 32 32 H 1.08993 * 113.79767 * 90.02540 * 9 8 6 33 33 H 1.09002 * 113.79071 * 318.55252 * 9 8 6 34 34 H 1.09001 * 113.78914 * 41.43469 * 11 8 6 35 35 H 1.08996 * 113.79012 * 269.97260 * 11 8 6 36 36 H 1.08999 * 109.52860 * 313.92575 * 12 10 9 37 37 H 1.09002 * 109.53309 * 193.70541 * 12 10 9 38 38 H 1.09003 * 109.58492 * 292.62381 * 13 12 10 39 39 H 1.08995 * 109.58616 * 172.19362 * 13 12 10 40 40 H 0.96999 * 120.00002 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.59140 * 175.04376 * 23 14 13 42 42 H 1.09002 * 109.58951 * 295.47202 * 23 14 13 43 43 H 1.09002 * 109.52812 * 46.07572 * 24 10 9 44 44 H 1.09000 * 109.53567 * 166.28807 * 24 10 9 45 45 H 1.07995 * 120.07040 * 179.72854 * 25 5 4 46 46 H 1.08001 * 119.92915 * 180.26930 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5753 1.2071 -0.0005 5 6 4.2762 0.0001 -0.0016 6 6 5.7547 0.0001 -0.0028 7 8 6.3625 1.0450 0.1247 8 7 6.4285 -1.1585 -0.1452 9 6 7.8549 -1.5376 -0.0998 10 6 7.4528 -2.7354 -0.9715 11 6 6.0360 -2.5574 -0.4086 12 6 7.5545 -2.4616 -2.4700 13 6 9.0326 -2.4439 -2.8780 14 7 9.6691 -3.6788 -2.4012 15 6 10.3257 -4.5035 -3.2751 16 1 9.9698 -4.6088 -4.2894 17 6 11.4522 -5.1998 -2.8591 18 7 12.0310 -4.8933 -1.7175 19 14 12.1465 -6.5719 -3.9196 20 1 11.3195 -6.7179 -5.1443 21 1 13.5432 -6.2433 -4.3024 22 1 12.1294 -7.8451 -3.1554 23 6 9.5862 -4.0196 -0.9749 24 6 8.1172 -4.0449 -0.5534 25 6 3.5753 -1.2070 -0.0074 26 6 2.1958 -1.2000 -0.0011 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5139 30 1 1.6521 2.1333 0.0004 31 1 4.1117 2.1445 -0.0001 32 1 8.2047 -1.8150 0.8945 33 1 8.5142 -0.8298 -0.6023 34 1 5.2497 -2.6601 -1.1564 35 1 5.8453 -3.1380 0.4939 36 1 7.1027 -1.4957 -2.6954 37 1 7.0341 -3.2458 -3.0199 38 1 9.5253 -1.5817 -2.4286 39 1 9.1113 -2.3877 -3.9636 40 1 12.8179 -5.3802 -1.4266 41 1 10.0298 -5.0011 -0.8073 42 1 10.1188 -3.2708 -0.3886 43 1 8.0489 -4.1589 0.5285 44 1 7.6150 -4.8803 -1.0412 45 1 4.1118 -2.1442 -0.0127 46 1 1.6522 -2.1332 -0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050739099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:42 Heat of formation + Delta-G solvation = 47.146221 kcal Electronic energy + Delta-G solvation = -26126.304287 eV Core-core repulsion = 22596.459122 eV Total energy + Delta-G solvation = -3529.845166 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.89454 -39.45581 -37.89620 -35.86233 -33.22329 -32.41101 -31.26674 -30.57911 -29.81122 -28.09173 -26.83572 -26.04297 -24.21343 -22.78633 -22.44058 -22.14251 -20.78503 -19.62698 -18.10769 -17.34096 -16.56704 -16.32032 -15.77087 -15.34119 -15.00037 -14.84199 -14.53227 -14.24029 -13.97387 -13.77165 -13.69649 -13.56213 -13.34480 -12.96575 -12.70392 -12.58929 -12.28713 -12.13495 -12.03791 -11.77361 -11.56627 -11.42268 -11.20586 -11.02879 -10.77910 -10.48628 -10.30768 -10.15755 -9.93313 -9.80628 -9.64209 -9.31465 -9.20980 -8.96296 -8.53184 -8.48161 -6.58267 -5.80541 -3.30184 0.68332 1.15418 2.79910 2.88909 3.35128 3.43418 3.45268 3.71517 4.31989 4.46794 4.47968 4.57145 4.61838 4.77649 4.95689 5.06267 5.11389 5.22322 5.23628 5.36004 5.38437 5.40100 5.42056 5.50943 5.56850 5.63784 5.67839 5.77480 5.85691 5.93312 6.05953 6.07483 6.10336 6.24741 6.27486 6.28181 6.44039 6.56590 6.60658 6.65810 6.67992 6.82241 6.96927 7.30747 7.61614 7.79486 7.79848 8.22018 8.48507 9.21775 9.82509 10.42327 11.27587 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.030150 B = 0.002750 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.459945 B =10177.650533 C =10533.369298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.067 4.067 3 C -0.131 4.131 4 C -0.059 4.059 5 C -0.132 4.132 6 C 0.575 3.425 7 O -0.545 6.545 8 N -0.634 5.634 9 C 0.119 3.881 10 C -0.073 4.073 11 C 0.094 3.906 12 C -0.108 4.108 13 C 0.147 3.853 14 N -0.590 5.590 15 C -0.255 4.255 16 H 0.062 0.938 17 C 0.007 3.993 18 N -0.901 5.901 19 Si 0.902 3.098 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.174 3.826 24 C -0.128 4.128 25 C -0.093 4.093 26 C -0.130 4.130 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.019 0.981 39 H 0.055 0.945 40 H 0.253 0.747 41 H 0.083 0.917 42 H 0.019 0.981 43 H 0.053 0.947 44 H 0.062 0.938 45 H 0.140 0.860 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.373 6.105 5.062 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.067 4.067 3 C -0.149 4.149 4 C -0.078 4.078 5 C -0.135 4.135 6 C 0.366 3.634 7 O -0.424 6.424 8 N -0.367 5.367 9 C -0.002 4.002 10 C -0.074 4.074 11 C -0.028 4.028 12 C -0.148 4.148 13 C 0.020 3.980 14 N -0.312 5.312 15 C -0.385 4.385 16 H 0.080 0.920 17 C -0.192 4.192 18 N -0.545 5.545 19 Si 0.731 3.269 20 H -0.202 1.202 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.048 3.952 24 C -0.167 4.167 25 C -0.112 4.112 26 C -0.148 4.148 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.145 0.855 31 H 0.152 0.848 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.037 0.963 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.037 0.963 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.157 0.843 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -20.978 6.780 5.213 22.654 hybrid contribution 0.374 -0.726 -0.365 0.894 sum -20.604 6.054 4.848 22.015 Atomic orbital electron populations 1.20854 0.90959 1.02997 1.02605 1.20156 0.96293 0.93246 0.97002 1.21012 0.93793 0.97788 1.02354 1.21280 0.93832 0.97771 0.94880 1.19969 0.92854 0.94435 1.06195 1.17952 0.86664 0.82452 0.76348 1.90758 1.69934 1.30680 1.51013 1.49942 1.10089 1.06524 1.70194 1.23305 0.82074 0.95014 0.99844 1.21998 0.92936 0.95961 0.96475 1.23632 0.99138 0.80302 0.99749 1.21775 1.00448 1.00137 0.92407 1.20900 0.89722 0.89664 0.97683 1.43934 1.62277 1.20476 1.04521 1.19174 1.04873 1.19844 0.94634 0.91990 1.25221 0.95698 1.00723 0.97550 1.70001 1.21064 1.41173 1.22225 0.86241 0.78730 0.81919 0.79965 1.20213 1.21667 1.21560 1.20613 0.89146 1.01151 0.84267 1.22075 1.01079 0.94583 0.98999 1.21912 0.94606 0.98187 0.96450 1.21015 0.93912 0.97769 1.02150 0.90814 0.91303 0.91344 0.85480 0.84753 0.89701 0.89782 0.89831 0.89500 0.92952 0.91741 0.96343 0.92619 0.93646 0.89832 0.96266 0.92805 0.91925 0.84279 0.85509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.00 36.01 0.36 -0.32 16 2 C -0.07 -0.58 5.89 -104.53 -0.62 -1.20 16 3 C -0.13 -1.25 9.68 -39.64 -0.38 -1.63 16 4 C -0.06 -0.70 9.59 -39.19 -0.38 -1.08 16 5 C -0.13 -1.75 5.87 -104.97 -0.62 -2.36 16 6 C 0.58 9.31 7.99 -12.33 -0.10 9.21 16 7 O -0.54 -10.67 17.10 5.32 0.09 -10.58 16 8 N -0.63 -9.39 3.43 -181.38 -0.62 -10.02 16 9 C 0.12 1.87 7.63 -3.15 -0.02 1.85 16 10 C -0.07 -1.11 0.77 -154.43 -0.12 -1.23 16 11 C 0.09 1.15 5.35 -3.16 -0.02 1.13 16 12 C -0.11 -1.81 5.21 -26.72 -0.14 -1.95 16 13 C 0.15 3.01 6.38 -3.66 -0.02 2.99 16 14 N -0.59 -14.16 2.94 -172.50 -0.51 -14.67 16 15 C -0.26 -6.81 9.51 -15.06 -0.14 -6.95 16 16 H 0.06 1.64 7.86 -52.48 -0.41 1.23 16 17 C 0.01 0.20 4.98 -17.43 -0.09 0.11 16 18 N -0.90 -25.59 11.34 55.49 0.63 -24.96 16 19 Si 0.90 21.25 29.57 -169.99 -5.03 16.22 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.17 3.87 5.14 -3.91 -0.02 3.85 16 24 C -0.13 -2.14 5.24 -26.97 -0.14 -2.28 16 25 C -0.09 -1.02 9.09 -39.18 -0.36 -1.37 16 26 C -0.13 -1.19 9.68 -39.64 -0.38 -1.58 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 29 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 31 H 0.13 1.62 7.67 -52.48 -0.40 1.22 16 32 H 0.08 1.25 8.07 -51.93 -0.42 0.84 16 33 H 0.08 1.47 7.41 -51.93 -0.38 1.08 16 34 H 0.08 0.91 6.80 -51.93 -0.35 0.56 16 35 H 0.09 0.89 8.01 -51.93 -0.42 0.48 16 36 H 0.05 0.84 8.01 -51.93 -0.42 0.43 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.02 0.40 7.49 -51.93 -0.39 0.01 16 39 H 0.06 1.14 7.92 -51.93 -0.41 0.73 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.08 2.11 6.29 -51.93 -0.33 1.78 16 42 H 0.02 0.45 8.08 -51.93 -0.42 0.03 16 43 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.14 1.35 4.06 -52.49 -0.21 1.14 16 46 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 364.53 15.07 5.49 5.49 Total: -1.00 -31.53 364.53 -10.20 -41.73 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.07 Total: -0.42 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -3.18 Total: -2.81 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -0.50 Total: -49.64 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.53 -10.20 -41.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050739099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.880 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds