Wall clock time and date at job start Tue Mar 31 2020 10:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38363 * 119.85352 * 2 1 4 4 C 1.37953 * 120.14617 * 180.02562 * 3 2 1 5 5 C 1.39578 * 119.85362 * 0.02562 * 4 3 2 6 6 C 1.47844 * 120.14393 * 179.97438 * 5 4 3 7 7 O 1.21552 * 120.00141 * 6.95321 * 6 5 4 8 8 N 1.34783 * 119.99605 * 186.95887 * 6 5 4 9 9 C 1.47662 * 134.45291 * 185.02473 * 8 6 5 10 10 C 1.53507 * 85.97691 * 204.29323 * 9 8 6 11 11 C 1.47663 * 134.45901 * 4.98887 * 8 6 5 12 12 C 1.52671 * 113.57798 * 91.01356 * 10 9 8 13 13 C 1.53339 * 109.11341 * 73.81533 * 12 10 9 14 14 N 1.46887 * 108.76241 * 52.40557 * 13 12 10 15 15 C 1.36931 * 120.46340 * 124.47277 * 14 13 12 16 16 H 1.08005 * 120.00142 * 326.05098 * 15 14 13 17 17 C 1.38808 * 119.99817 * 145.77829 * 15 14 13 18 18 N 1.31620 * 120.00103 * 347.76085 * 17 15 14 19 19 Si 1.86795 * 120.00032 * 167.76096 * 17 15 14 20 20 H 1.48500 * 109.47526 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47462 * 120.00082 * 19 17 15 22 22 H 1.48502 * 109.47342 * 239.99691 * 19 17 15 23 23 C 1.46879 * 119.06640 * 304.74943 * 14 13 12 24 24 C 1.52670 * 113.56553 * 222.23096 * 10 9 8 25 25 C 1.39580 * 119.70960 * 0.25030 * 5 4 3 26 26 C 1.37956 * 119.85171 * 359.47389 * 25 5 4 27 27 H 1.09003 * 109.47122 * 90.00031 * 1 2 3 28 28 H 1.08999 * 109.47063 * 209.99463 * 1 2 3 29 29 H 1.09000 * 109.46778 * 329.99603 * 1 2 3 30 30 H 1.08008 * 119.92379 * 0.02562 * 3 2 1 31 31 H 1.08004 * 120.07495 * 180.02562 * 4 3 2 32 32 H 1.08993 * 113.79767 * 90.02540 * 9 8 6 33 33 H 1.09002 * 113.79071 * 318.55252 * 9 8 6 34 34 H 1.09001 * 113.78914 * 41.43469 * 11 8 6 35 35 H 1.08996 * 113.79012 * 269.97260 * 11 8 6 36 36 H 1.08999 * 109.52860 * 313.92575 * 12 10 9 37 37 H 1.09002 * 109.53309 * 193.70541 * 12 10 9 38 38 H 1.09003 * 109.58492 * 292.62381 * 13 12 10 39 39 H 1.08995 * 109.58616 * 172.19362 * 13 12 10 40 40 H 0.96999 * 120.00002 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.59140 * 175.04376 * 23 14 13 42 42 H 1.09002 * 109.58951 * 295.47202 * 23 14 13 43 43 H 1.09002 * 109.52812 * 46.07572 * 24 10 9 44 44 H 1.09000 * 109.53567 * 166.28807 * 24 10 9 45 45 H 1.07995 * 120.07040 * 179.72854 * 25 5 4 46 46 H 1.08001 * 119.92915 * 180.26930 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5753 1.2071 -0.0005 5 6 4.2762 0.0001 -0.0016 6 6 5.7547 0.0001 -0.0028 7 8 6.3625 1.0450 0.1247 8 7 6.4285 -1.1585 -0.1452 9 6 7.8549 -1.5376 -0.0998 10 6 7.4528 -2.7354 -0.9715 11 6 6.0360 -2.5574 -0.4086 12 6 7.5545 -2.4616 -2.4700 13 6 9.0326 -2.4439 -2.8780 14 7 9.6691 -3.6788 -2.4012 15 6 10.3257 -4.5035 -3.2751 16 1 9.9698 -4.6088 -4.2894 17 6 11.4522 -5.1998 -2.8591 18 7 12.0310 -4.8933 -1.7175 19 14 12.1465 -6.5719 -3.9196 20 1 11.3195 -6.7179 -5.1443 21 1 13.5432 -6.2433 -4.3024 22 1 12.1294 -7.8451 -3.1554 23 6 9.5862 -4.0196 -0.9749 24 6 8.1172 -4.0449 -0.5534 25 6 3.5753 -1.2070 -0.0074 26 6 2.1958 -1.2000 -0.0011 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5139 30 1 1.6521 2.1333 0.0004 31 1 4.1117 2.1445 -0.0001 32 1 8.2047 -1.8150 0.8945 33 1 8.5142 -0.8298 -0.6023 34 1 5.2497 -2.6601 -1.1564 35 1 5.8453 -3.1380 0.4939 36 1 7.1027 -1.4957 -2.6954 37 1 7.0341 -3.2458 -3.0199 38 1 9.5253 -1.5817 -2.4286 39 1 9.1113 -2.3877 -3.9636 40 1 12.8179 -5.3802 -1.4266 41 1 10.0298 -5.0011 -0.8073 42 1 10.1188 -3.2708 -0.3886 43 1 8.0489 -4.1589 0.5285 44 1 7.6150 -4.8803 -1.0412 45 1 4.1118 -2.1442 -0.0127 46 1 1.6522 -2.1332 -0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050739099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:41 Heat of formation + Delta-G solvation = 29.741685 kcal Electronic energy + Delta-G solvation = -26127.059005 eV Core-core repulsion = 22596.459122 eV Total energy + Delta-G solvation = -3530.599883 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.07713 -40.40894 -39.07521 -37.51037 -34.40800 -33.77162 -32.30375 -31.91414 -31.40799 -29.18214 -28.04083 -27.09602 -25.93739 -23.97091 -23.58579 -23.18524 -22.27409 -20.70656 -19.62514 -18.53299 -18.07658 -17.54432 -16.89887 -16.82342 -16.22158 -15.85225 -15.60168 -15.50682 -15.36972 -15.12768 -14.85581 -14.59211 -14.50995 -14.23612 -13.93544 -13.85420 -13.36386 -13.09228 -13.02443 -13.00078 -12.88393 -12.81009 -12.62116 -12.50588 -12.25983 -12.01592 -11.93386 -11.82573 -11.39557 -11.29483 -11.19381 -10.74175 -10.51256 -9.97304 -9.88892 -9.56838 -8.55308 -7.85028 -5.38167 -0.16597 0.40487 1.47194 1.49389 1.59558 1.71828 1.80349 2.52199 2.84547 3.24927 3.32049 3.40097 3.70499 3.81788 3.84587 3.98011 4.01127 4.06479 4.22439 4.31917 4.39467 4.43145 4.45437 4.53915 4.59080 4.68865 4.70964 4.78551 4.80649 4.87240 4.89200 4.93187 5.03714 5.08740 5.14437 5.18989 5.25470 5.33882 5.34985 5.36403 5.42454 5.54465 5.59590 5.68640 5.81611 5.96073 6.45445 6.64133 7.02412 7.20031 7.88382 8.42517 9.20328 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.030150 B = 0.002750 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.459945 B =10177.650533 C =10533.369298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.061 4.061 3 C -0.133 4.133 4 C -0.077 4.077 5 C -0.159 4.159 6 C 0.568 3.432 7 O -0.596 6.596 8 N -0.633 5.633 9 C 0.112 3.888 10 C -0.073 4.073 11 C 0.112 3.888 12 C -0.094 4.094 13 C 0.144 3.856 14 N -0.606 5.606 15 C -0.263 4.263 16 H 0.062 0.938 17 C -0.045 4.045 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.295 1.295 22 H -0.287 1.287 23 C 0.179 3.821 24 C -0.110 4.110 25 C -0.093 4.093 26 C -0.130 4.130 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.149 0.851 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.002 0.998 39 H 0.050 0.950 40 H 0.250 0.750 41 H 0.050 0.950 42 H -0.006 1.006 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.153 0.847 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.365 4.637 5.099 26.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.061 4.061 3 C -0.151 4.151 4 C -0.096 4.096 5 C -0.161 4.161 6 C 0.361 3.639 7 O -0.479 6.479 8 N -0.366 5.366 9 C -0.010 4.010 10 C -0.074 4.074 11 C -0.009 4.009 12 C -0.133 4.133 13 C 0.018 3.982 14 N -0.330 5.330 15 C -0.394 4.394 16 H 0.079 0.921 17 C -0.241 4.241 18 N -0.579 5.579 19 Si 0.794 3.206 20 H -0.190 1.190 21 H -0.223 1.223 22 H -0.214 1.214 23 C 0.053 3.947 24 C -0.150 4.150 25 C -0.111 4.111 26 C -0.148 4.148 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.167 0.833 31 H 0.137 0.863 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.125 0.875 35 H 0.138 0.862 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.020 0.980 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.012 0.988 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.170 0.830 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -25.010 5.294 5.239 26.096 hybrid contribution 1.590 -0.190 -0.395 1.649 sum -23.421 5.104 4.844 24.455 Atomic orbital electron populations 1.20936 0.88497 1.04270 1.03623 1.20592 0.98069 0.92708 0.94753 1.21273 0.92713 0.99459 1.01629 1.21325 0.95109 0.97039 0.96089 1.19851 0.90933 0.96055 1.09306 1.18529 0.88037 0.81922 0.75400 1.90717 1.71184 1.32452 1.53534 1.49977 1.09556 1.07479 1.69594 1.23294 0.82663 0.94772 1.00278 1.21885 0.95524 0.94658 0.95310 1.23748 0.97159 0.78553 1.01457 1.21568 0.97144 1.00855 0.93728 1.20973 0.92128 0.87823 0.97245 1.44193 1.62534 1.21342 1.04930 1.19474 1.04922 1.19901 0.95064 0.92057 1.25950 0.96231 1.03113 0.98830 1.70158 1.21500 1.42377 1.23869 0.85233 0.77569 0.79050 0.78727 1.19030 1.22251 1.21382 1.20456 0.92600 0.98312 0.83298 1.21841 0.96798 0.95606 1.00736 1.22042 0.95500 0.97472 0.96048 1.21397 0.93265 0.99231 1.00856 0.89723 0.89870 0.90364 0.83340 0.86306 0.88708 0.92634 0.87457 0.86210 0.92292 0.90712 0.97984 0.93149 0.94110 0.93160 0.98780 0.89997 0.91204 0.83009 0.82468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.00 71.24 0.71 -0.12 16 2 C -0.06 -0.84 5.89 -19.81 -0.12 -0.96 16 3 C -0.13 -2.24 9.68 22.23 0.22 -2.03 16 4 C -0.08 -1.81 9.59 22.53 0.22 -1.60 16 5 C -0.16 -4.06 5.87 -20.09 -0.12 -4.18 16 6 C 0.57 18.52 7.99 86.79 0.69 19.21 16 7 O -0.60 -24.54 17.10 -3.88 -0.07 -24.60 16 8 N -0.63 -18.11 3.43 -846.05 -2.90 -21.01 16 9 C 0.11 3.53 7.63 86.32 0.66 4.19 16 10 C -0.07 -2.10 0.77 -52.03 -0.04 -2.14 16 11 C 0.11 2.33 5.35 86.31 0.46 2.79 16 12 C -0.09 -3.04 5.21 30.60 0.16 -2.88 16 13 C 0.14 6.04 6.38 86.42 0.55 6.60 16 14 N -0.61 -29.75 2.94 -699.68 -2.06 -31.81 16 15 C -0.26 -14.25 9.51 84.03 0.80 -13.45 16 16 H 0.06 3.27 7.86 -2.91 -0.02 3.24 16 17 C -0.05 -2.50 4.98 84.86 0.42 -2.08 16 18 N -0.93 -54.73 11.34 21.65 0.25 -54.48 16 19 Si 0.97 44.26 29.57 68.60 2.03 46.29 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 22 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 23 C 0.18 8.12 5.14 86.26 0.44 8.57 16 24 C -0.11 -3.52 5.24 30.44 0.16 -3.36 16 25 C -0.09 -1.72 9.09 22.53 0.20 -1.52 16 26 C -0.13 -1.83 9.68 22.23 0.22 -1.61 16 27 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.08 0.40 8.08 -2.39 -0.02 0.38 16 29 H 0.08 0.44 8.08 -2.39 -0.02 0.42 16 30 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 31 H 0.12 3.06 7.67 -2.91 -0.02 3.04 16 32 H 0.09 2.78 8.07 -2.39 -0.02 2.76 16 33 H 0.06 2.05 7.41 -2.39 -0.02 2.03 16 34 H 0.11 1.82 6.80 -2.39 -0.02 1.80 16 35 H 0.12 1.83 8.01 -2.39 -0.02 1.81 16 36 H 0.06 1.84 8.01 -2.39 -0.02 1.82 16 37 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.00 0.10 7.49 -2.39 -0.02 0.08 16 39 H 0.05 2.11 7.92 -2.39 -0.02 2.09 16 40 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 41 H 0.05 2.61 6.29 -2.38 -0.01 2.59 16 42 H -0.01 -0.29 8.08 -2.39 -0.02 -0.31 16 43 H 0.08 2.18 8.12 -2.39 -0.02 2.16 16 44 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.15 2.29 4.06 -2.91 -0.01 2.28 16 46 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -72.71 364.53 3.86 -68.85 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.97 Total: 11.34 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 5.64 Total: 5.42 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -4.71 Total: -107.30 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.07 Total: -24.60 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -72.71 3.86 -68.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050739099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.591 kcal (2) G-P(sol) polarization free energy of solvation -72.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds