Wall clock time and date at job start Tue Mar 31 2020 11:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32681 * 1 3 3 C 1.47669 * 120.00256 * 2 1 4 4 C 1.39708 * 119.99535 * 180.02562 * 3 2 1 5 5 C 1.37606 * 120.00319 * 180.02562 * 4 3 2 6 6 C 1.39750 * 119.99158 * 359.97208 * 5 4 3 7 7 C 1.47683 * 119.99739 * 179.97438 * 6 5 4 8 8 O 1.21568 * 120.00795 * 359.97438 * 7 6 5 9 9 N 1.34786 * 119.99659 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00011 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.16673 * 34.33728 * 10 9 7 12 12 C 1.50120 * 109.20816 * 153.67450 * 10 9 7 13 13 C 1.52528 * 105.41989 * 218.02912 * 12 10 9 14 14 C 1.46239 * 114.27307 * 270.59865 * 13 12 10 15 15 N 1.50170 * 107.53593 * 58.40571 * 14 13 12 16 16 C 1.36932 * 120.54376 * 109.61103 * 15 14 13 17 17 H 1.08000 * 120.00357 * 211.15729 * 16 15 14 18 18 C 1.38818 * 119.99836 * 31.15672 * 16 15 14 19 19 N 1.31616 * 119.99882 * 19.51464 * 18 16 15 20 20 Si 1.86801 * 120.00051 * 199.51642 * 18 16 15 21 21 H 1.48504 * 109.47033 * 94.73771 * 20 18 16 22 22 H 1.48491 * 109.47011 * 214.73989 * 20 18 16 23 23 H 1.48499 * 109.47024 * 334.74268 * 20 18 16 24 24 C 1.43433 * 118.91975 * 289.58560 * 15 14 13 25 25 C 1.54837 * 109.20899 * 274.99874 * 10 9 7 26 26 C 1.39740 * 119.99421 * 0.25775 * 6 5 4 27 27 C 1.37600 * 119.99449 * 359.51098 * 26 6 5 28 28 H 1.07999 * 120.00005 * 179.97438 * 1 2 3 29 29 H 1.07993 * 119.99989 * 359.97438 * 1 2 3 30 30 H 1.08007 * 119.99906 * 180.02562 * 2 1 3 31 31 H 1.07997 * 120.00223 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.00476 * 179.97438 * 5 4 3 33 33 H 0.97002 * 119.99644 * 359.97438 * 9 7 6 34 34 H 1.08999 * 110.25126 * 99.05462 * 12 10 9 35 35 H 1.08997 * 110.25157 * 337.00026 * 12 10 9 36 36 H 1.09000 * 108.52640 * 149.35721 * 13 12 10 37 37 H 1.08997 * 108.52336 * 31.83412 * 13 12 10 38 38 H 1.09008 * 109.84546 * 177.91188 * 14 13 12 39 39 H 1.09002 * 109.84929 * 298.88996 * 14 13 12 40 40 H 0.97000 * 119.99592 * 180.02562 * 19 18 16 41 41 H 1.09003 * 108.16284 * 213.28882 * 24 15 14 42 42 H 1.09003 * 108.16012 * 330.06226 * 24 15 14 43 43 H 1.09001 * 109.36310 * 80.58161 * 25 10 9 44 44 H 1.08997 * 109.25067 * 320.92665 * 25 10 9 45 45 H 1.07998 * 120.00427 * 179.72479 * 26 6 5 46 46 H 1.08004 * 119.99803 * 180.21157 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0652 1.2788 0.0000 4 6 3.4623 1.2786 -0.0005 5 6 4.1505 2.4702 0.0000 6 6 3.4518 3.6805 0.0005 7 6 4.1904 4.9594 0.0016 8 8 5.4060 4.9595 0.0026 9 7 3.5165 6.1267 0.0026 10 6 4.2490 7.3954 0.0043 11 1 5.1644 7.2809 -0.5761 12 6 3.3958 8.4592 -0.6235 13 6 4.3562 9.3228 -1.4349 14 6 4.9391 10.4373 -0.6888 15 7 5.6651 9.8606 0.4924 16 6 7.0332 9.8797 0.5456 17 1 7.5648 9.0927 1.0598 18 6 7.7370 10.9109 -0.0615 19 7 7.1302 12.0437 -0.3456 20 14 9.5452 10.6905 -0.4754 21 1 9.6792 10.2381 -1.8835 22 1 10.2540 11.9837 -0.3014 23 1 10.1399 9.6744 0.4296 24 6 4.9021 9.2897 1.5644 25 6 4.6134 7.7713 1.4615 26 6 2.0545 3.6804 0.0059 27 6 1.3666 2.4887 0.0005 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8668 -0.9354 -0.0004 31 1 4.0022 0.3433 -0.0014 32 1 5.2305 2.4701 0.0000 33 1 2.5464 6.1267 0.0022 34 1 2.9103 9.0573 0.1475 35 1 2.6502 8.0075 -1.2778 36 1 3.8190 9.7246 -2.2941 37 1 5.1651 8.6907 -1.8013 38 1 5.6386 10.9818 -1.3233 39 1 4.1498 11.1071 -0.3473 40 1 7.6219 12.7641 -0.7701 41 1 5.4371 9.4713 2.4966 42 1 3.9464 9.8114 1.6166 43 1 5.4984 7.2137 1.7680 44 1 3.7809 7.5165 2.1173 45 1 1.5144 4.6156 0.0108 46 1 0.2866 2.4886 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052737595.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:05 Heat of formation + Delta-G solvation = 33.767408 kcal Electronic energy + Delta-G solvation = -25767.424963 eV Core-core repulsion = 22236.999648 eV Total energy + Delta-G solvation = -3530.425315 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.30299 -38.91882 -37.60801 -34.72802 -34.48095 -32.61185 -31.60321 -31.28379 -30.31450 -29.32651 -26.21387 -24.71633 -23.97643 -22.94739 -22.87200 -20.86756 -20.23853 -19.77199 -19.21050 -17.91055 -16.74664 -16.43551 -15.75526 -15.19419 -15.13999 -15.02855 -14.60363 -14.40617 -14.04063 -13.91302 -13.61388 -13.44886 -13.23071 -13.00189 -12.64787 -12.52951 -12.37327 -11.91405 -11.62573 -11.54661 -11.19727 -11.15024 -10.87624 -10.74857 -10.68160 -10.51177 -10.35211 -10.14453 -9.80474 -9.63813 -9.60944 -9.41423 -9.28615 -8.75625 -8.50426 -8.37910 -6.59356 -5.75595 -3.20552 0.31881 1.12923 1.96385 3.05055 3.35208 3.42914 3.50053 3.53346 3.80349 4.33439 4.39783 4.55425 4.60263 4.77250 4.86620 5.04948 5.12549 5.20452 5.35459 5.37697 5.45577 5.51356 5.60684 5.68343 5.72349 5.88619 5.93761 5.95950 6.08973 6.12851 6.18571 6.20584 6.28493 6.38494 6.41561 6.57211 6.60323 6.62545 6.77479 6.90159 6.93089 7.01411 7.04621 7.37814 7.68877 7.72509 7.88836 8.41687 8.54763 9.21738 9.90466 10.46068 11.31751 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.025831 B = 0.002725 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.724404 B =10271.580173 C =10895.915195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.121 4.121 3 C -0.043 4.043 4 C -0.117 4.117 5 C -0.060 4.060 6 C -0.127 4.127 7 C 0.549 3.451 8 O -0.531 6.531 9 N -0.722 5.722 10 C 0.154 3.846 11 H 0.095 0.905 12 C -0.120 4.120 13 C -0.131 4.131 14 C 0.147 3.853 15 N -0.584 5.584 16 C -0.248 4.248 17 H 0.064 0.936 18 C 0.004 3.996 19 N -0.898 5.898 20 Si 0.897 3.103 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.278 1.278 24 C 0.161 3.839 25 C -0.151 4.151 26 C -0.085 4.085 27 C -0.123 4.123 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.130 0.870 32 H 0.138 0.862 33 H 0.392 0.608 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.022 0.978 40 H 0.253 0.747 41 H 0.040 0.960 42 H 0.027 0.973 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.128 0.872 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.110 -19.709 -0.421 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.139 4.139 3 C -0.043 4.043 4 C -0.135 4.135 5 C -0.079 4.079 6 C -0.130 4.130 7 C 0.335 3.665 8 O -0.408 6.408 9 N -0.373 5.373 10 C 0.052 3.948 11 H 0.113 0.887 12 C -0.158 4.158 13 C -0.171 4.171 14 C 0.023 3.977 15 N -0.305 5.305 16 C -0.378 4.378 17 H 0.081 0.919 18 C -0.194 4.194 19 N -0.542 5.542 20 Si 0.728 3.272 21 H -0.215 1.215 22 H -0.219 1.219 23 H -0.203 1.203 24 C 0.031 3.969 25 C -0.193 4.193 26 C -0.104 4.104 27 C -0.141 4.141 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.138 0.862 31 H 0.148 0.852 32 H 0.156 0.844 33 H 0.226 0.774 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.041 0.959 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.045 0.955 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.145 0.855 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.121 -19.486 -0.488 24.669 hybrid contribution 0.410 -0.215 -0.240 0.521 sum -14.712 -19.700 -0.728 24.598 Atomic orbital electron populations 1.24451 0.95674 1.02431 0.98594 1.21848 0.95272 0.95781 1.00982 1.19298 0.93427 0.93230 0.98331 1.21246 0.93146 0.98216 1.00893 1.21264 1.01053 0.90745 0.94848 1.20204 0.93670 0.94163 1.04964 1.18254 0.87440 0.83795 0.76966 1.90813 1.13302 1.87450 1.49266 1.46444 1.09844 1.06416 1.74627 1.21261 0.95453 0.80077 0.98058 0.88750 1.21342 0.97673 0.97228 0.99572 1.20996 0.97808 0.99910 0.98336 1.20342 0.95142 0.92406 0.89838 1.43936 1.02395 1.67182 1.16939 1.19147 0.81520 1.04019 1.33128 0.91866 1.25011 0.97726 0.94430 1.02260 1.70021 1.36044 1.02851 1.45267 0.86340 0.85335 0.76967 0.78608 1.21476 1.21867 1.20285 1.20267 0.94736 0.89811 0.92099 1.23336 1.00081 1.01403 0.94527 1.21234 0.93073 0.98403 0.97710 1.21198 1.00021 0.91505 1.01394 0.87627 0.87903 0.86203 0.85203 0.84386 0.77377 0.90944 0.92468 0.93880 0.92233 0.88099 0.95935 0.93741 0.94215 0.95494 0.92464 0.93160 0.85460 0.85252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.98 14.15 28.84 0.41 -0.57 16 2 C -0.12 -0.83 9.90 -37.62 -0.37 -1.20 16 3 C -0.04 -0.38 5.87 -104.95 -0.62 -1.00 16 4 C -0.12 -1.12 9.76 -39.26 -0.38 -1.50 16 5 C -0.06 -0.72 9.58 -39.25 -0.38 -1.09 16 6 C -0.13 -1.61 5.88 -104.91 -0.62 -2.22 16 7 C 0.55 8.77 7.73 -12.40 -0.10 8.68 16 8 O -0.53 -10.84 15.97 5.31 0.08 -10.75 16 9 N -0.72 -10.33 4.90 -55.25 -0.27 -10.60 16 10 C 0.15 2.69 2.24 -68.39 -0.15 2.54 16 11 H 0.09 2.04 6.22 -51.93 -0.32 1.71 16 12 C -0.12 -1.91 5.34 -28.41 -0.15 -2.06 16 13 C -0.13 -2.50 5.20 -30.19 -0.16 -2.65 16 14 C 0.15 3.38 5.36 -5.20 -0.03 3.35 16 15 N -0.58 -14.49 2.56 -175.07 -0.45 -14.94 16 16 C -0.25 -6.93 9.54 -15.06 -0.14 -7.07 16 17 H 0.06 1.80 7.90 -52.49 -0.41 1.39 16 18 C 0.00 0.12 4.93 -17.43 -0.09 0.03 16 19 N -0.90 -26.00 11.25 55.49 0.62 -25.38 16 20 Si 0.90 22.28 29.60 -169.99 -5.03 17.25 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 C 0.16 3.42 5.18 -4.66 -0.02 3.39 16 25 C -0.15 -2.82 6.00 -24.76 -0.15 -2.96 16 26 C -0.09 -0.83 9.52 -39.25 -0.37 -1.21 16 27 C -0.12 -1.06 9.38 -39.27 -0.37 -1.43 16 28 H 0.11 0.43 8.06 -52.49 -0.42 0.00 16 29 H 0.10 0.51 6.02 -52.49 -0.32 0.20 16 30 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 31 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.14 1.71 7.64 -52.49 -0.40 1.30 16 33 H 0.39 4.22 6.52 -40.82 -0.27 3.95 16 34 H 0.07 1.14 6.28 -51.93 -0.33 0.81 16 35 H 0.06 0.76 7.87 -51.93 -0.41 0.35 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 1.25 6.93 -51.93 -0.36 0.89 16 38 H 0.10 2.65 5.65 -51.92 -0.29 2.36 16 39 H 0.02 0.51 8.12 -51.93 -0.42 0.09 16 40 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 41 H 0.04 0.88 8.00 -51.93 -0.42 0.47 16 42 H 0.03 0.53 6.88 -51.93 -0.36 0.18 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 45 H 0.13 0.95 6.38 -52.49 -0.34 0.61 16 46 H 0.13 0.81 6.15 -52.48 -0.32 0.48 16 LS Contribution 364.62 15.07 5.49 5.49 Total: -1.00 -32.36 364.62 -9.86 -42.22 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.63 Total: 3.68 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -3.69 Total: -6.98 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.09 Total: -50.91 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.36 -9.86 -42.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052737595.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.988 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds