Wall clock time and date at job start Tue Mar 31 2020 11:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32681 * 1 3 3 C 1.47669 * 120.00256 * 2 1 4 4 C 1.39708 * 119.99535 * 180.02562 * 3 2 1 5 5 C 1.37606 * 120.00319 * 180.02562 * 4 3 2 6 6 C 1.39750 * 119.99158 * 359.97208 * 5 4 3 7 7 C 1.47683 * 119.99739 * 179.97438 * 6 5 4 8 8 O 1.21568 * 120.00795 * 359.97438 * 7 6 5 9 9 N 1.34786 * 119.99659 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00011 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.16673 * 34.33728 * 10 9 7 12 12 C 1.50120 * 109.20816 * 153.67450 * 10 9 7 13 13 C 1.52528 * 105.41989 * 218.02912 * 12 10 9 14 14 C 1.46239 * 114.27307 * 270.59865 * 13 12 10 15 15 N 1.50170 * 107.53593 * 58.40571 * 14 13 12 16 16 C 1.36932 * 120.54376 * 109.61103 * 15 14 13 17 17 H 1.08000 * 120.00357 * 211.15729 * 16 15 14 18 18 C 1.38818 * 119.99836 * 31.15672 * 16 15 14 19 19 N 1.31616 * 119.99882 * 19.51464 * 18 16 15 20 20 Si 1.86801 * 120.00051 * 199.51642 * 18 16 15 21 21 H 1.48504 * 109.47033 * 94.73771 * 20 18 16 22 22 H 1.48491 * 109.47011 * 214.73989 * 20 18 16 23 23 H 1.48499 * 109.47024 * 334.74268 * 20 18 16 24 24 C 1.43433 * 118.91975 * 289.58560 * 15 14 13 25 25 C 1.54837 * 109.20899 * 274.99874 * 10 9 7 26 26 C 1.39740 * 119.99421 * 0.25775 * 6 5 4 27 27 C 1.37600 * 119.99449 * 359.51098 * 26 6 5 28 28 H 1.07999 * 120.00005 * 179.97438 * 1 2 3 29 29 H 1.07993 * 119.99989 * 359.97438 * 1 2 3 30 30 H 1.08007 * 119.99906 * 180.02562 * 2 1 3 31 31 H 1.07997 * 120.00223 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.00476 * 179.97438 * 5 4 3 33 33 H 0.97002 * 119.99644 * 359.97438 * 9 7 6 34 34 H 1.08999 * 110.25126 * 99.05462 * 12 10 9 35 35 H 1.08997 * 110.25157 * 337.00026 * 12 10 9 36 36 H 1.09000 * 108.52640 * 149.35721 * 13 12 10 37 37 H 1.08997 * 108.52336 * 31.83412 * 13 12 10 38 38 H 1.09008 * 109.84546 * 177.91188 * 14 13 12 39 39 H 1.09002 * 109.84929 * 298.88996 * 14 13 12 40 40 H 0.97000 * 119.99592 * 180.02562 * 19 18 16 41 41 H 1.09003 * 108.16284 * 213.28882 * 24 15 14 42 42 H 1.09003 * 108.16012 * 330.06226 * 24 15 14 43 43 H 1.09001 * 109.36310 * 80.58161 * 25 10 9 44 44 H 1.08997 * 109.25067 * 320.92665 * 25 10 9 45 45 H 1.07998 * 120.00427 * 179.72479 * 26 6 5 46 46 H 1.08004 * 119.99803 * 180.21157 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0652 1.2788 0.0000 4 6 3.4623 1.2786 -0.0005 5 6 4.1505 2.4702 0.0000 6 6 3.4518 3.6805 0.0005 7 6 4.1904 4.9594 0.0016 8 8 5.4060 4.9595 0.0026 9 7 3.5165 6.1267 0.0026 10 6 4.2490 7.3954 0.0043 11 1 5.1644 7.2809 -0.5761 12 6 3.3958 8.4592 -0.6235 13 6 4.3562 9.3228 -1.4349 14 6 4.9391 10.4373 -0.6888 15 7 5.6651 9.8606 0.4924 16 6 7.0332 9.8797 0.5456 17 1 7.5648 9.0927 1.0598 18 6 7.7370 10.9109 -0.0615 19 7 7.1302 12.0437 -0.3456 20 14 9.5452 10.6905 -0.4754 21 1 9.6792 10.2381 -1.8835 22 1 10.2540 11.9837 -0.3014 23 1 10.1399 9.6744 0.4296 24 6 4.9021 9.2897 1.5644 25 6 4.6134 7.7713 1.4615 26 6 2.0545 3.6804 0.0059 27 6 1.3666 2.4887 0.0005 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8668 -0.9354 -0.0004 31 1 4.0022 0.3433 -0.0014 32 1 5.2305 2.4701 0.0000 33 1 2.5464 6.1267 0.0022 34 1 2.9103 9.0573 0.1475 35 1 2.6502 8.0075 -1.2778 36 1 3.8190 9.7246 -2.2941 37 1 5.1651 8.6907 -1.8013 38 1 5.6386 10.9818 -1.3233 39 1 4.1498 11.1071 -0.3473 40 1 7.6219 12.7641 -0.7701 41 1 5.4371 9.4713 2.4966 42 1 3.9464 9.8114 1.6166 43 1 5.4984 7.2137 1.7680 44 1 3.7809 7.5165 2.1173 45 1 1.5144 4.6156 0.0108 46 1 0.2866 2.4886 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052737595.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:04 Heat of formation + Delta-G solvation = 14.867789 kcal Electronic energy + Delta-G solvation = -25768.244512 eV Core-core repulsion = 22236.999648 eV Total energy + Delta-G solvation = -3531.244864 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.41811 -40.00523 -39.04038 -36.34229 -35.16369 -34.25869 -33.29994 -32.35567 -31.56492 -30.31860 -28.00571 -25.93612 -25.58702 -24.29812 -23.67175 -22.13255 -21.58621 -20.87317 -20.53071 -18.95348 -18.53391 -17.50764 -17.02222 -16.86826 -16.20798 -16.13856 -15.85539 -15.69601 -15.58638 -15.16356 -15.01574 -14.52312 -14.20999 -14.13493 -13.98211 -13.82412 -13.53395 -13.19779 -13.18608 -13.15707 -12.76267 -12.58859 -12.25838 -12.19990 -12.05386 -11.84032 -11.80239 -11.59604 -11.37719 -11.32113 -11.18271 -10.97562 -10.49760 -10.06926 -10.02548 -9.19869 -8.62175 -7.89550 -5.36262 -0.44047 0.39629 1.30142 1.40949 1.43667 1.52584 2.08703 2.17148 2.48947 2.96240 3.20673 3.60105 3.63449 3.76769 3.88405 3.91325 3.95294 4.06114 4.24292 4.34037 4.34751 4.42104 4.46687 4.49718 4.63618 4.75178 4.79635 4.88739 4.94383 4.97468 5.02572 5.07373 5.20346 5.24066 5.24830 5.33477 5.34411 5.37313 5.44302 5.61017 5.63475 5.66951 5.69202 5.79999 5.82019 5.91650 6.44326 6.58081 7.12855 7.25352 7.87677 8.38143 9.14581 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.025831 B = 0.002725 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.724404 B =10271.580173 C =10895.915195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.146 4.146 3 C -0.035 4.035 4 C -0.124 4.124 5 C -0.078 4.078 6 C -0.155 4.155 7 C 0.546 3.454 8 O -0.590 6.590 9 N -0.706 5.706 10 C 0.164 3.836 11 H 0.046 0.954 12 C -0.106 4.106 13 C -0.126 4.126 14 C 0.151 3.849 15 N -0.600 5.600 16 C -0.259 4.259 17 H 0.045 0.955 18 C -0.040 4.040 19 N -0.920 5.920 20 Si 0.953 3.047 21 H -0.287 1.287 22 H -0.287 1.287 23 H -0.278 1.278 24 C 0.158 3.842 25 C -0.138 4.138 26 C -0.076 4.076 27 C -0.126 4.126 28 H 0.124 0.876 29 H 0.112 0.888 30 H 0.131 0.869 31 H 0.148 0.852 32 H 0.118 0.882 33 H 0.414 0.586 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.065 0.935 39 H 0.028 0.972 40 H 0.252 0.748 41 H 0.020 0.980 42 H 0.051 0.949 43 H 0.022 0.978 44 H 0.084 0.916 45 H 0.154 0.846 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.124 -21.535 -0.623 29.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.164 4.164 3 C -0.036 4.036 4 C -0.142 4.142 5 C -0.097 4.097 6 C -0.158 4.158 7 C 0.335 3.665 8 O -0.471 6.471 9 N -0.358 5.358 10 C 0.060 3.940 11 H 0.065 0.935 12 C -0.143 4.143 13 C -0.165 4.165 14 C 0.028 3.972 15 N -0.322 5.322 16 C -0.389 4.389 17 H 0.063 0.937 18 C -0.236 4.236 19 N -0.565 5.565 20 Si 0.782 3.218 21 H -0.214 1.214 22 H -0.213 1.213 23 H -0.203 1.203 24 C 0.029 3.971 25 C -0.180 4.180 26 C -0.094 4.094 27 C -0.143 4.143 28 H 0.142 0.858 29 H 0.130 0.870 30 H 0.149 0.851 31 H 0.166 0.834 32 H 0.136 0.864 33 H 0.253 0.747 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.083 0.917 39 H 0.046 0.954 40 H 0.061 0.939 41 H 0.039 0.961 42 H 0.069 0.931 43 H 0.041 0.959 44 H 0.102 0.898 45 H 0.172 0.828 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -19.201 -21.327 -0.682 28.705 hybrid contribution 1.531 0.222 -0.145 1.553 sum -17.670 -21.105 -0.828 27.538 Atomic orbital electron populations 1.24767 0.95209 1.03847 0.95192 1.21930 0.95908 0.95236 1.03319 1.19661 0.93178 0.94625 0.96091 1.21428 0.93934 0.97925 1.00865 1.21259 1.00422 0.91878 0.96121 1.19983 0.94954 0.92257 1.08603 1.18853 0.86946 0.85192 0.75517 1.90782 1.16021 1.88294 1.52047 1.46148 1.10758 1.04910 1.73948 1.20871 0.94621 0.82084 0.96419 0.93531 1.21268 0.97164 0.95967 0.99928 1.20827 0.97923 0.98539 0.99191 1.20252 0.94279 0.93601 0.89091 1.44139 1.01796 1.67718 1.18571 1.19216 0.83423 1.03341 1.32935 0.93730 1.25593 1.01081 0.94301 1.02639 1.70119 1.37161 1.03245 1.46020 0.85478 0.81458 0.76830 0.78081 1.21420 1.21316 1.20311 1.20379 0.94989 0.91458 0.90247 1.23150 0.99856 0.98752 0.96246 1.21472 0.91535 1.00211 0.96225 1.21570 1.01555 0.90745 1.00460 0.85793 0.86965 0.85122 0.83422 0.86436 0.74745 0.89642 0.88506 0.91144 0.95046 0.91684 0.95370 0.93904 0.96127 0.93077 0.95919 0.89777 0.82850 0.82135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 14.15 66.65 0.94 -0.09 16 2 C -0.15 -1.51 9.90 23.59 0.23 -1.27 16 3 C -0.04 -0.53 5.87 -20.08 -0.12 -0.65 16 4 C -0.12 -2.25 9.76 22.48 0.22 -2.03 16 5 C -0.08 -1.91 9.58 22.49 0.22 -1.70 16 6 C -0.15 -3.87 5.88 -20.05 -0.12 -3.99 16 7 C 0.55 17.82 7.73 86.74 0.67 18.49 16 8 O -0.59 -25.82 15.97 -3.93 -0.06 -25.89 16 9 N -0.71 -19.26 4.90 -446.99 -2.19 -21.46 16 10 C 0.16 5.68 2.24 44.69 0.10 5.78 16 11 H 0.05 2.11 6.22 -2.39 -0.01 2.09 16 12 C -0.11 -3.08 5.34 29.51 0.16 -2.92 16 13 C -0.13 -4.70 5.20 28.36 0.15 -4.55 16 14 C 0.15 7.05 5.36 83.58 0.45 7.49 16 15 N -0.60 -30.64 2.56 -707.81 -1.81 -32.45 16 16 C -0.26 -15.04 9.54 84.04 0.80 -14.24 16 17 H 0.04 2.70 7.90 -2.91 -0.02 2.68 16 18 C -0.04 -2.31 4.93 84.86 0.42 -1.89 16 19 N -0.92 -54.68 11.25 21.65 0.24 -54.43 16 20 Si 0.95 47.33 29.60 68.60 2.03 49.36 16 21 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 22 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 23 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 24 C 0.16 6.76 5.18 87.59 0.45 7.21 16 25 C -0.14 -5.16 6.00 31.87 0.19 -4.97 16 26 C -0.08 -1.27 9.52 22.48 0.21 -1.05 16 27 C -0.13 -1.71 9.38 22.47 0.21 -1.50 16 28 H 0.12 0.41 8.06 -2.91 -0.02 0.39 16 29 H 0.11 0.53 6.02 -2.91 -0.02 0.52 16 30 H 0.13 1.03 8.06 -2.91 -0.02 1.00 16 31 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 32 H 0.12 3.25 7.64 -2.91 -0.02 3.22 16 33 H 0.41 7.47 6.52 -92.71 -0.60 6.87 16 34 H 0.09 2.34 6.28 -2.39 -0.01 2.33 16 35 H 0.10 2.11 7.87 -2.39 -0.02 2.09 16 36 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.03 1.35 6.93 -2.39 -0.02 1.33 16 38 H 0.06 3.52 5.65 -2.38 -0.01 3.51 16 39 H 0.03 1.26 8.12 -2.39 -0.02 1.24 16 40 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 41 H 0.02 0.94 8.00 -2.39 -0.02 0.92 16 42 H 0.05 1.94 6.88 -2.39 -0.02 1.92 16 43 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.08 2.55 8.12 -2.39 -0.02 2.53 16 45 H 0.15 1.61 6.38 -2.91 -0.02 1.59 16 46 H 0.16 1.15 6.15 -2.91 -0.02 1.13 16 Total: -1.00 -75.98 364.62 3.78 -72.20 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.38 Total: 14.52 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 5.19 Total: -1.86 kcal Atomic # 7 Polarization: -104.58 SS G_CDS: -3.76 Total: -108.34 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.06 Total: -25.89 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -75.98 3.78 -72.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052737595.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.070 kcal (2) G-P(sol) polarization free energy of solvation -75.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds