Wall clock time and date at job start Tue Mar 31 2020 11:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.47357 * 2 1 4 4 C 1.37974 * 120.07396 * 258.69624 * 3 2 1 5 5 C 1.38336 * 120.14541 * 180.02562 * 4 3 2 6 6 C 1.38385 * 120.29211 * 0.02562 * 5 4 3 7 7 C 1.37934 * 120.14183 * 0.02562 * 6 5 4 8 8 C 1.39558 * 120.06933 * 78.73642 * 3 2 1 9 9 C 1.47848 * 120.14687 * 359.97438 * 8 3 2 10 10 O 1.21555 * 119.99686 * 35.08239 * 9 8 3 11 11 N 1.34773 * 120.00019 * 215.08093 * 9 8 3 12 12 C 1.47395 * 135.85179 * 5.08475 * 11 9 8 13 13 C 1.52074 * 87.40951 * 154.38389 * 12 11 9 14 14 C 1.47388 * 135.85599 * 185.44914 * 11 9 8 15 15 C 1.53514 * 117.21045 * 267.27603 * 13 12 11 16 16 C 1.54629 * 102.70405 * 262.92861 * 15 13 12 17 17 N 1.47139 * 107.37719 * 339.38845 * 16 15 13 18 18 C 1.36943 * 125.58074 * 179.04179 * 17 16 15 19 19 H 1.07994 * 120.00068 * 174.99148 * 18 17 16 20 20 C 1.38810 * 119.99494 * 354.99191 * 18 17 16 21 21 N 1.31610 * 120.00423 * 5.33220 * 20 18 17 22 22 Si 1.86805 * 119.99431 * 185.33149 * 20 18 17 23 23 H 1.48507 * 109.46800 * 95.00028 * 22 20 18 24 24 H 1.48504 * 109.46950 * 214.99278 * 22 20 18 25 25 H 1.48490 * 109.47402 * 334.99731 * 22 20 18 26 26 C 1.47756 * 108.84167 * 359.08503 * 17 16 15 27 27 H 1.08991 * 109.47082 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47011 * 300.00418 * 1 2 3 29 29 H 1.09001 * 109.46754 * 59.99292 * 1 2 3 30 30 H 1.09002 * 109.46568 * 240.00425 * 2 1 3 31 31 H 1.08998 * 109.46686 * 120.00173 * 2 1 3 32 32 H 1.07997 * 119.92845 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.85865 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.93244 * 180.02562 * 6 5 4 35 35 H 1.08004 * 120.07361 * 179.72140 * 7 6 5 36 36 H 1.09000 * 113.54088 * 268.99186 * 12 11 9 37 37 H 1.08998 * 113.54445 * 39.67440 * 12 11 9 38 38 H 1.09009 * 113.54220 * 320.32688 * 14 11 9 39 39 H 1.08995 * 113.54817 * 90.93123 * 14 11 9 40 40 H 1.09002 * 110.76304 * 21.23902 * 15 13 12 41 41 H 1.09006 * 110.76423 * 144.62330 * 15 13 12 42 42 H 1.08993 * 109.86056 * 98.83748 * 16 15 13 43 43 H 1.09001 * 109.86490 * 219.93637 * 16 15 13 44 44 H 0.96996 * 120.00390 * 179.97438 * 21 20 18 45 45 H 1.09000 * 110.40546 * 263.50245 * 26 17 16 46 46 H 1.09002 * 110.40334 * 141.08170 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.4836 1.9947 -1.1708 5 6 2.9456 3.2986 -1.1724 6 6 2.9591 4.0358 -0.0013 7 6 2.5119 3.4736 1.1762 8 6 2.0432 2.1587 1.1845 9 6 1.5615 1.5501 2.4429 10 8 1.7523 0.3691 2.6587 11 7 0.9110 2.3046 3.3506 12 6 0.4211 3.6932 3.4155 13 6 -0.6113 3.2089 4.4216 14 6 0.3857 2.1022 4.7127 15 6 -1.9815 2.7863 3.8733 16 6 -2.8396 4.0546 4.0878 17 7 -2.1745 4.8658 5.1196 18 6 -2.6096 6.0789 5.5827 19 1 -2.0952 6.5606 6.4010 20 6 -3.7120 6.6892 5.0002 21 7 -4.4020 6.0567 4.0750 22 14 -4.2159 8.4083 5.5296 23 1 -3.6197 9.4057 4.6048 24 1 -5.6960 8.5232 5.4941 25 1 -3.7326 8.6626 6.9104 26 6 -0.9596 4.1579 5.5736 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 2.4761 1.4246 -2.0881 33 1 3.2973 3.7433 -2.0916 34 1 3.3207 5.0534 -0.0093 35 1 2.5271 4.0485 2.0904 36 1 1.1450 4.3911 3.8362 37 1 -0.0126 4.0461 2.4799 38 1 -0.0775 1.1265 4.8602 39 1 1.1001 2.3533 5.4967 40 1 -1.9143 2.5397 2.8136 41 1 -2.3831 1.9472 4.4415 42 1 -2.9049 4.6192 3.1578 43 1 -3.8378 3.7739 4.4237 44 1 -5.1725 6.4830 3.6683 45 1 -1.1664 3.5926 6.4823 46 1 -0.1478 4.8656 5.7417 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072924433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:58 Heat of formation + Delta-G solvation = 54.978006 kcal Electronic energy + Delta-G solvation = -26583.655392 eV Core-core repulsion = 23054.149837 eV Total energy + Delta-G solvation = -3529.505554 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.89953 -39.58447 -37.75686 -35.72398 -34.07394 -32.33748 -31.46829 -29.66064 -29.30279 -28.59760 -26.03477 -25.92259 -24.26099 -23.61336 -23.07156 -21.14843 -20.30918 -19.53033 -18.39743 -17.23908 -16.75157 -16.28038 -15.93452 -15.77833 -15.08423 -14.88960 -14.60644 -14.19971 -14.00146 -13.81576 -13.63471 -13.44744 -13.08750 -12.96057 -12.46660 -12.31291 -12.25478 -11.96110 -11.86196 -11.78328 -11.64460 -11.14370 -11.01790 -10.93271 -10.91190 -10.68156 -10.42149 -10.15776 -10.10480 -9.88274 -9.67855 -9.48928 -9.09005 -8.82864 -8.60980 -8.53529 -6.86294 -5.74713 -3.07972 0.84132 1.22661 2.81797 2.89493 3.38079 3.43559 3.45620 3.69456 4.36350 4.47269 4.61902 4.63992 4.69015 4.84640 4.95690 5.10453 5.22879 5.23142 5.35707 5.39459 5.46110 5.47396 5.51084 5.63499 5.64762 5.67501 5.79998 5.82432 5.85374 5.89988 5.94471 6.08865 6.15489 6.19942 6.21301 6.28996 6.29973 6.43912 6.48247 6.52590 6.64329 6.68225 6.76810 7.52372 7.60519 7.79739 7.82745 8.21407 8.22708 9.18559 9.78814 10.44705 11.37009 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017252 B = 0.003489 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.583176 B = 8023.684910 C = 8520.553702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C -0.026 4.026 4 C -0.129 4.129 5 C -0.096 4.096 6 C -0.133 4.133 7 C -0.080 4.080 8 C -0.125 4.125 9 C 0.588 3.412 10 O -0.540 6.540 11 N -0.637 5.637 12 C 0.119 3.881 13 C -0.104 4.104 14 C 0.119 3.881 15 C -0.116 4.116 16 C 0.179 3.821 17 N -0.604 5.604 18 C -0.230 4.230 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.920 5.920 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.154 3.846 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.041 0.959 44 H 0.252 0.748 45 H 0.027 0.973 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.708 -7.699 -8.523 17.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.142 4.142 3 C -0.027 4.027 4 C -0.147 4.147 5 C -0.114 4.114 6 C -0.151 4.151 7 C -0.099 4.099 8 C -0.128 4.128 9 C 0.379 3.621 10 O -0.419 6.419 11 N -0.371 5.371 12 C -0.003 4.003 13 C -0.106 4.106 14 C -0.003 4.003 15 C -0.155 4.155 16 C 0.054 3.946 17 N -0.331 5.331 18 C -0.358 4.358 19 H 0.096 0.904 20 C -0.202 4.202 21 N -0.567 5.567 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.027 3.973 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.123 0.877 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.044 0.956 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.725 -8.309 -8.603 18.205 hybrid contribution -0.274 1.152 0.173 1.197 sum 13.450 -7.157 -8.430 17.413 Atomic orbital electron populations 1.21655 0.94470 1.01796 1.01797 1.20887 0.96577 0.92304 1.04388 1.19980 0.94990 0.96107 0.91636 1.21020 1.00623 0.95629 0.97478 1.21311 0.97740 0.94204 0.98194 1.21091 1.01174 1.00273 0.92528 1.21366 0.96445 0.93288 0.98782 1.19726 1.04612 0.94999 0.93501 1.17778 0.76495 0.85282 0.82574 1.90681 1.57788 1.15129 1.78319 1.49759 1.56346 1.14589 1.16399 1.22941 0.94081 0.83181 1.00126 1.22180 0.94465 0.96151 0.97819 1.22792 0.94096 0.99956 0.83477 1.22457 0.93216 1.00165 0.99617 1.21229 0.93258 0.86985 0.93090 1.44540 1.23711 1.20011 1.44850 1.19050 1.10237 0.93379 1.13131 0.90383 1.24805 0.98111 0.98570 0.98721 1.69963 1.20228 1.36542 1.29973 0.86136 0.77590 0.84370 0.77896 1.21636 1.21777 1.20630 1.21140 0.90594 0.92558 0.93010 0.92297 0.92706 0.92984 0.91436 0.87653 0.85568 0.85727 0.85477 0.85483 0.89577 0.89997 0.90338 0.89674 0.92145 0.91809 0.93233 0.94116 0.93738 0.95585 0.93919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.83 37.16 0.37 -1.34 16 2 C -0.10 -1.27 5.41 -27.88 -0.15 -1.43 16 3 C -0.03 -0.33 5.17 -104.23 -0.54 -0.87 16 4 C -0.13 -1.36 9.66 -39.64 -0.38 -1.74 16 5 C -0.10 -0.93 10.04 -39.49 -0.40 -1.33 16 6 C -0.13 -1.37 10.03 -39.64 -0.40 -1.77 16 7 C -0.08 -0.97 8.96 -39.19 -0.35 -1.32 16 8 C -0.13 -1.74 5.73 -104.97 -0.60 -2.34 16 9 C 0.59 9.25 6.56 -12.33 -0.08 9.17 16 10 O -0.54 -9.70 14.93 5.32 0.08 -9.62 16 11 N -0.64 -9.41 3.64 -186.85 -0.68 -10.10 16 12 C 0.12 1.73 5.93 -7.33 -0.04 1.68 16 13 C -0.10 -1.68 1.06 -155.22 -0.16 -1.84 16 14 C 0.12 1.68 8.03 -7.48 -0.06 1.62 16 15 C -0.12 -2.10 6.40 -25.61 -0.16 -2.26 16 16 C 0.18 4.16 5.40 -2.84 -0.02 4.15 16 17 N -0.60 -14.59 3.41 -170.54 -0.58 -15.17 16 18 C -0.23 -6.14 10.27 -15.06 -0.15 -6.30 16 19 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 20 C -0.01 -0.15 5.48 -17.44 -0.10 -0.25 16 21 N -0.92 -26.35 10.33 55.49 0.57 -25.78 16 22 Si 0.91 21.51 29.56 -169.99 -5.02 16.49 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.15 2.89 6.70 -3.22 -0.02 2.86 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.79 7.26 -51.93 -0.38 0.41 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.67 7.99 -51.93 -0.41 0.25 16 31 H 0.11 1.51 5.65 -51.93 -0.29 1.22 16 32 H 0.13 1.03 8.03 -52.49 -0.42 0.61 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.13 1.43 6.63 -52.48 -0.35 1.08 16 36 H 0.09 1.11 7.88 -51.93 -0.41 0.70 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.08 1.11 8.13 -51.92 -0.42 0.69 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.05 1.28 7.25 -51.93 -0.38 0.91 16 43 H 0.04 1.06 7.63 -51.93 -0.40 0.66 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.04 0.76 8.00 -51.93 -0.42 0.35 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -31.01 367.49 -10.57 -41.58 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -7.22 Total: 0.37 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -3.25 Total: -3.31 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.69 Total: -51.04 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.01 -10.57 -41.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072924433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.556 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds