Wall clock time and date at job start Tue Mar 31 2020 11:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.47357 * 2 1 4 4 C 1.37974 * 120.07396 * 258.69624 * 3 2 1 5 5 C 1.38336 * 120.14541 * 180.02562 * 4 3 2 6 6 C 1.38385 * 120.29211 * 0.02562 * 5 4 3 7 7 C 1.37934 * 120.14183 * 0.02562 * 6 5 4 8 8 C 1.39558 * 120.06933 * 78.73642 * 3 2 1 9 9 C 1.47848 * 120.14687 * 359.97438 * 8 3 2 10 10 O 1.21555 * 119.99686 * 35.08239 * 9 8 3 11 11 N 1.34773 * 120.00019 * 215.08093 * 9 8 3 12 12 C 1.47395 * 135.85179 * 5.08475 * 11 9 8 13 13 C 1.52074 * 87.40951 * 154.38389 * 12 11 9 14 14 C 1.47388 * 135.85599 * 185.44914 * 11 9 8 15 15 C 1.53514 * 117.21045 * 267.27603 * 13 12 11 16 16 C 1.54629 * 102.70405 * 262.92861 * 15 13 12 17 17 N 1.47139 * 107.37719 * 339.38845 * 16 15 13 18 18 C 1.36943 * 125.58074 * 179.04179 * 17 16 15 19 19 H 1.07994 * 120.00068 * 174.99148 * 18 17 16 20 20 C 1.38810 * 119.99494 * 354.99191 * 18 17 16 21 21 N 1.31610 * 120.00423 * 5.33220 * 20 18 17 22 22 Si 1.86805 * 119.99431 * 185.33149 * 20 18 17 23 23 H 1.48507 * 109.46800 * 95.00028 * 22 20 18 24 24 H 1.48504 * 109.46950 * 214.99278 * 22 20 18 25 25 H 1.48490 * 109.47402 * 334.99731 * 22 20 18 26 26 C 1.47756 * 108.84167 * 359.08503 * 17 16 15 27 27 H 1.08991 * 109.47082 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47011 * 300.00418 * 1 2 3 29 29 H 1.09001 * 109.46754 * 59.99292 * 1 2 3 30 30 H 1.09002 * 109.46568 * 240.00425 * 2 1 3 31 31 H 1.08998 * 109.46686 * 120.00173 * 2 1 3 32 32 H 1.07997 * 119.92845 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.85865 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.93244 * 180.02562 * 6 5 4 35 35 H 1.08004 * 120.07361 * 179.72140 * 7 6 5 36 36 H 1.09000 * 113.54088 * 268.99186 * 12 11 9 37 37 H 1.08998 * 113.54445 * 39.67440 * 12 11 9 38 38 H 1.09009 * 113.54220 * 320.32688 * 14 11 9 39 39 H 1.08995 * 113.54817 * 90.93123 * 14 11 9 40 40 H 1.09002 * 110.76304 * 21.23902 * 15 13 12 41 41 H 1.09006 * 110.76423 * 144.62330 * 15 13 12 42 42 H 1.08993 * 109.86056 * 98.83748 * 16 15 13 43 43 H 1.09001 * 109.86490 * 219.93637 * 16 15 13 44 44 H 0.96996 * 120.00390 * 179.97438 * 21 20 18 45 45 H 1.09000 * 110.40546 * 263.50245 * 26 17 16 46 46 H 1.09002 * 110.40334 * 141.08170 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.4836 1.9947 -1.1708 5 6 2.9456 3.2986 -1.1724 6 6 2.9591 4.0358 -0.0013 7 6 2.5119 3.4736 1.1762 8 6 2.0432 2.1587 1.1845 9 6 1.5615 1.5501 2.4429 10 8 1.7523 0.3691 2.6587 11 7 0.9110 2.3046 3.3506 12 6 0.4211 3.6932 3.4155 13 6 -0.6113 3.2089 4.4216 14 6 0.3857 2.1022 4.7127 15 6 -1.9815 2.7863 3.8733 16 6 -2.8396 4.0546 4.0878 17 7 -2.1745 4.8658 5.1196 18 6 -2.6096 6.0789 5.5827 19 1 -2.0952 6.5606 6.4010 20 6 -3.7120 6.6892 5.0002 21 7 -4.4020 6.0567 4.0750 22 14 -4.2159 8.4083 5.5296 23 1 -3.6197 9.4057 4.6048 24 1 -5.6960 8.5232 5.4941 25 1 -3.7326 8.6626 6.9104 26 6 -0.9596 4.1579 5.5736 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 2.4761 1.4246 -2.0881 33 1 3.2973 3.7433 -2.0916 34 1 3.3207 5.0534 -0.0093 35 1 2.5271 4.0485 2.0904 36 1 1.1450 4.3911 3.8362 37 1 -0.0126 4.0461 2.4799 38 1 -0.0775 1.1265 4.8602 39 1 1.1001 2.3533 5.4967 40 1 -1.9143 2.5397 2.8136 41 1 -2.3831 1.9472 4.4415 42 1 -2.9049 4.6192 3.1578 43 1 -3.8378 3.7739 4.4237 44 1 -5.1725 6.4830 3.6683 45 1 -1.1664 3.5926 6.4823 46 1 -0.1478 4.8656 5.7417 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072924433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:57 Heat of formation + Delta-G solvation = 38.315723 kcal Electronic energy + Delta-G solvation = -26584.377922 eV Core-core repulsion = 23054.149837 eV Total energy + Delta-G solvation = -3530.228085 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.10077 -40.64140 -38.91408 -37.33954 -35.00337 -34.10370 -32.54800 -31.08370 -30.47674 -30.00870 -27.50085 -27.20038 -25.78181 -24.71176 -24.08597 -22.20655 -21.98524 -20.68093 -19.76594 -18.59540 -18.28594 -17.43772 -16.95376 -16.79702 -16.67392 -16.23941 -16.03439 -15.60749 -15.22985 -14.96223 -14.74386 -14.44648 -14.20058 -14.09050 -13.98495 -13.71988 -13.63347 -13.33092 -13.14084 -12.87854 -12.77859 -12.69327 -12.49803 -12.28111 -12.14656 -11.99945 -11.86848 -11.83990 -11.77651 -11.63828 -11.22917 -10.68641 -10.64680 -9.96870 -9.74790 -9.65101 -8.84709 -7.81421 -5.15844 -0.05797 0.39830 1.49967 1.50687 1.59692 1.71695 1.78221 2.52949 2.81177 3.20381 3.36392 3.47336 3.56322 3.77251 3.81427 3.86063 4.04026 4.11981 4.19979 4.28879 4.32179 4.44013 4.48532 4.51338 4.51940 4.58764 4.60810 4.67587 4.70375 4.83644 4.89388 4.92730 4.97771 5.03337 5.06041 5.13700 5.16319 5.19848 5.32058 5.38399 5.50191 5.51439 5.60643 5.66948 5.79516 5.97092 6.22750 6.64696 7.05387 7.13792 7.81443 8.46294 9.29472 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017252 B = 0.003489 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.583176 B = 8023.684910 C = 8520.553702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.101 4.101 3 C -0.045 4.045 4 C -0.131 4.131 5 C -0.090 4.090 6 C -0.135 4.135 7 C -0.090 4.090 8 C -0.153 4.153 9 C 0.585 3.415 10 O -0.571 6.571 11 N -0.638 5.638 12 C 0.127 3.873 13 C -0.099 4.099 14 C 0.126 3.874 15 C -0.102 4.102 16 C 0.191 3.809 17 N -0.625 5.625 18 C -0.236 4.236 19 H 0.087 0.913 20 C -0.065 4.065 21 N -0.952 5.952 22 Si 0.974 3.026 23 H -0.287 1.287 24 H -0.300 1.300 25 H -0.266 1.266 26 C 0.153 3.847 27 H 0.067 0.933 28 H 0.025 0.975 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.131 0.869 36 H 0.110 0.890 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.014 0.986 43 H 0.001 0.999 44 H 0.245 0.755 45 H 0.035 0.965 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.972 -7.036 -9.190 19.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.138 4.138 3 C -0.046 4.046 4 C -0.148 4.148 5 C -0.108 4.108 6 C -0.153 4.153 7 C -0.109 4.109 8 C -0.156 4.156 9 C 0.377 3.623 10 O -0.452 6.452 11 N -0.371 5.371 12 C 0.005 3.995 13 C -0.101 4.101 14 C 0.004 3.996 15 C -0.140 4.140 16 C 0.066 3.934 17 N -0.351 5.351 18 C -0.365 4.365 19 H 0.105 0.895 20 C -0.258 4.258 21 N -0.602 5.602 22 Si 0.803 3.197 23 H -0.214 1.214 24 H -0.227 1.227 25 H -0.191 1.191 26 C 0.028 3.972 27 H 0.086 0.914 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.169 0.831 33 H 0.175 0.825 34 H 0.169 0.831 35 H 0.149 0.851 36 H 0.128 0.872 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.131 0.869 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.032 0.968 43 H 0.019 0.981 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.023 -7.648 -9.241 20.016 hybrid contribution -0.955 0.934 0.367 1.385 sum 15.068 -6.714 -8.874 18.732 Atomic orbital electron populations 1.21616 0.94816 1.02061 1.00787 1.20822 0.96235 0.92483 1.04273 1.20175 0.95853 0.96274 0.92250 1.21345 0.99674 0.96304 0.97512 1.21740 0.96159 0.93718 0.99214 1.21446 1.00351 1.01425 0.92071 1.21508 0.96746 0.92711 0.99900 1.19765 1.06548 0.96157 0.93100 1.18149 0.76061 0.84939 0.83115 1.90661 1.59173 1.16380 1.78987 1.49744 1.56158 1.14600 1.16610 1.22939 0.93903 0.83492 0.99182 1.22001 0.93935 0.96798 0.97335 1.22823 0.93782 0.98956 0.84020 1.22237 0.93771 0.97794 1.00196 1.20894 0.92637 0.88584 0.91298 1.44821 1.25552 1.19845 1.44919 1.19478 1.09902 0.94250 1.12914 0.89482 1.25609 0.98661 1.02140 0.99361 1.70188 1.20612 1.37856 1.31498 0.85123 0.76447 0.80052 0.78114 1.21447 1.22687 1.19085 1.21305 0.88977 0.92996 0.93970 0.91427 0.95560 0.91969 0.89006 0.90182 0.83086 0.82480 0.83065 0.85099 0.87170 0.91110 0.90420 0.86947 0.91820 0.90861 0.96761 0.98072 0.94589 0.94677 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.83 71.98 0.71 -2.58 16 2 C -0.10 -2.41 5.41 29.85 0.16 -2.25 16 3 C -0.04 -1.08 5.17 -19.61 -0.10 -1.19 16 4 C -0.13 -2.39 9.66 22.23 0.21 -2.18 16 5 C -0.09 -1.44 10.04 22.33 0.22 -1.21 16 6 C -0.14 -2.41 10.03 22.23 0.22 -2.19 16 7 C -0.09 -2.04 8.96 22.53 0.20 -1.84 16 8 C -0.15 -4.15 5.73 -20.09 -0.12 -4.27 16 9 C 0.59 18.32 6.56 86.79 0.57 18.89 16 10 O -0.57 -20.79 14.93 -3.89 -0.06 -20.85 16 11 N -0.64 -18.23 3.64 -863.34 -3.15 -21.38 16 12 C 0.13 3.51 5.93 83.76 0.50 4.01 16 13 C -0.10 -3.07 1.06 -52.62 -0.06 -3.12 16 14 C 0.13 3.32 8.03 83.67 0.67 4.00 16 15 C -0.10 -3.71 6.40 31.32 0.20 -3.51 16 16 C 0.19 9.24 5.40 86.81 0.47 9.70 16 17 N -0.62 -30.34 3.41 -693.48 -2.36 -32.71 16 18 C -0.24 -12.66 10.27 84.03 0.86 -11.80 16 19 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 20 C -0.06 -3.60 5.48 84.86 0.47 -3.13 16 21 N -0.95 -56.58 10.33 21.65 0.22 -56.36 16 22 Si 0.97 44.63 29.56 68.60 2.03 46.66 16 23 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 26 C 0.15 5.51 6.70 86.22 0.58 6.09 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.03 0.76 7.26 -2.39 -0.02 0.75 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.67 7.99 -2.39 -0.02 1.65 16 31 H 0.08 2.34 5.65 -2.39 -0.01 2.33 16 32 H 0.15 1.93 8.03 -2.91 -0.02 1.91 16 33 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 34 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 35 H 0.13 2.73 6.63 -2.91 -0.02 2.71 16 36 H 0.11 2.55 7.88 -2.39 -0.02 2.53 16 37 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.08 2.09 8.13 -2.38 -0.02 2.07 16 39 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.06 2.27 8.07 -2.39 -0.02 2.26 16 41 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 42 H 0.01 0.78 7.25 -2.39 -0.02 0.76 16 43 H 0.00 0.06 7.63 -2.39 -0.02 0.04 16 44 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 45 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.06 1.97 8.00 -2.39 -0.02 1.95 16 Total: -1.00 -69.85 367.49 3.42 -66.44 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.96 Total: 14.77 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 5.77 Total: 3.43 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -5.29 Total: -110.44 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.06 Total: -20.85 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -69.85 3.42 -66.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072924433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.752 kcal (2) G-P(sol) polarization free energy of solvation -69.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds