Wall clock time and date at job start Tue Mar 31 2020 10:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37956 * 120.07312 * 2 1 4 4 C 1.38362 * 120.14405 * 180.27827 * 3 2 1 5 5 C 1.38356 * 120.29258 * 359.73718 * 4 3 2 6 6 C 1.37960 * 120.14655 * 0.02897 * 5 4 3 7 7 C 1.50701 * 120.07251 * 179.97438 * 6 5 4 8 8 C 1.39575 * 119.85084 * 359.97268 * 6 5 4 9 9 C 1.47843 * 120.14177 * 179.97438 * 8 6 5 10 10 O 1.21550 * 120.00115 * 90.00411 * 9 8 6 11 11 N 1.34778 * 119.99622 * 269.99917 * 9 8 6 12 12 C 1.47853 * 134.36072 * 180.02562 * 11 9 8 13 13 C 1.52553 * 85.66560 * 156.40881 * 12 11 9 14 14 C 1.47844 * 134.36800 * 0.06086 * 11 9 8 15 15 C 1.53855 * 115.94160 * 140.70114 * 13 12 11 16 16 C 1.55157 * 101.40978 * 163.66434 * 15 13 12 17 17 N 1.47549 * 105.00403 * 324.35060 * 16 15 13 18 18 C 1.36940 * 125.65391 * 203.90644 * 17 16 15 19 19 H 1.08001 * 119.99535 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.00356 * 0.02562 * 18 17 16 21 21 N 1.31614 * 120.00050 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99685 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47198 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.46785 * 119.99907 * 22 20 18 25 25 H 1.48493 * 109.47082 * 239.99592 * 22 20 18 26 26 C 1.47354 * 108.68084 * 23.92541 * 17 16 15 27 27 H 1.09001 * 109.47422 * 270.21159 * 1 2 3 28 28 H 1.08994 * 109.47755 * 30.21166 * 1 2 3 29 29 H 1.08997 * 109.47366 * 150.21629 * 1 2 3 30 30 H 1.08000 * 119.93250 * 0.02562 * 3 2 1 31 31 H 1.07999 * 119.85375 * 179.72303 * 4 3 2 32 32 H 1.08010 * 119.92886 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.46561 * 270.01692 * 7 6 5 34 34 H 1.08996 * 109.47510 * 30.01282 * 7 6 5 35 35 H 1.09003 * 109.47075 * 150.02118 * 7 6 5 36 36 H 1.08997 * 113.84559 * 42.22078 * 12 11 9 37 37 H 1.09006 * 113.95431 * 270.60749 * 12 11 9 38 38 H 1.09001 * 113.84457 * 89.40266 * 14 11 9 39 39 H 1.09002 * 113.83937 * 317.77390 * 14 11 9 40 40 H 1.09001 * 111.03528 * 45.63184 * 15 13 12 41 41 H 1.09000 * 111.04046 * 281.69400 * 15 13 12 42 42 H 1.08998 * 110.33591 * 83.23420 * 16 15 13 43 43 H 1.09004 * 110.33316 * 205.47085 * 16 15 13 44 44 H 0.96997 * 120.00055 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.98213 * 238.60839 * 26 17 16 46 46 H 1.09000 * 110.01845 * 117.33152 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1939 0.0000 4 6 3.5818 1.1956 -0.0058 5 6 4.2812 0.0018 -0.0062 6 6 3.6021 -1.1991 -0.0013 7 6 4.3655 -2.4984 -0.0023 8 6 2.2064 -1.2079 0.0045 9 6 1.4721 -2.4910 0.0091 10 8 1.1746 -3.0172 1.0637 11 7 1.1325 -3.0773 -1.1560 12 6 0.4192 -4.3206 -1.5183 13 6 0.1130 -3.6228 -2.8399 14 6 1.3254 -2.7337 -2.5810 15 6 0.1824 -4.5048 -4.0986 16 6 -0.5758 -3.6279 -5.1300 17 7 -1.6446 -2.9668 -4.3569 18 6 -2.8172 -2.4805 -4.8704 19 1 -3.5386 -2.0109 -4.2182 20 6 -3.0785 -2.5910 -6.2292 21 7 -2.1991 -3.1628 -7.0241 22 14 -4.6778 -1.9268 -6.9297 23 1 -5.4889 -1.3342 -5.8361 24 1 -4.3787 -0.8844 -7.9442 25 1 -5.4368 -3.0333 -7.5659 26 6 -1.2406 -2.9164 -2.9407 27 1 -0.3634 0.0038 1.0276 28 1 -0.3634 0.8880 -0.5171 29 1 -0.3634 -0.8919 -0.5104 30 1 1.6583 2.1292 0.0004 31 1 4.1183 2.1329 -0.0103 32 1 5.3613 0.0100 -0.0103 33 1 4.5456 -2.8131 -1.0303 34 1 5.3189 -2.3600 0.5075 35 1 3.7842 -3.2618 0.5149 36 1 -0.4629 -4.5162 -0.9086 37 1 1.0688 -5.1902 -1.6193 38 1 2.2527 -3.1186 -3.0054 39 1 1.1561 -1.6810 -2.8072 40 1 -0.3300 -5.4537 -3.9401 41 1 1.2153 -4.6664 -4.4068 42 1 0.0950 -2.8848 -5.5611 43 1 -1.0057 -4.2515 -5.9139 44 1 -2.3819 -3.2404 -7.9736 45 1 -1.9769 -3.4327 -2.3247 46 1 -1.1451 -1.8801 -2.6166 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073008471.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:21 Heat of formation + Delta-G solvation = 49.266406 kcal Electronic energy + Delta-G solvation = -26741.891687 eV Core-core repulsion = 23212.138459 eV Total energy + Delta-G solvation = -3529.753228 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.83135 -39.55334 -37.77169 -35.58685 -33.74477 -32.46511 -32.00635 -29.69945 -28.56229 -27.52948 -26.79897 -26.20942 -25.83215 -23.90802 -22.55968 -20.85608 -20.38274 -19.39371 -18.26391 -17.30995 -16.84567 -16.30520 -16.08472 -15.50672 -15.02566 -14.72108 -14.48802 -14.13554 -13.98255 -13.71551 -13.37441 -13.19017 -13.13396 -13.03202 -12.81447 -12.55413 -12.16987 -12.03673 -11.99496 -11.73815 -11.55995 -11.51720 -11.31208 -11.18415 -10.98501 -10.84406 -10.44738 -10.10362 -10.07495 -9.92859 -9.72978 -9.42248 -8.88886 -8.73268 -8.68244 -8.56757 -6.87181 -5.68663 -3.10070 1.02805 1.20315 2.64834 2.90053 3.37940 3.44001 3.46106 3.53347 4.34262 4.46667 4.60679 4.64275 4.65640 4.78157 4.99469 5.08850 5.16925 5.24948 5.36760 5.39930 5.42941 5.47244 5.50014 5.60232 5.61200 5.65560 5.67428 5.69538 5.77284 5.80764 5.90736 5.96966 6.12072 6.14448 6.25823 6.26973 6.32039 6.41450 6.49576 6.53960 6.67691 6.72301 6.78795 7.46301 7.59828 7.77106 7.81707 8.19256 8.32151 9.18842 9.79225 10.43734 11.35424 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017574 B = 0.003638 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.912580 B = 7694.140248 C = 8305.633513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.043 4.043 3 C -0.128 4.128 4 C -0.100 4.100 5 C -0.130 4.130 6 C -0.050 4.050 7 C -0.120 4.120 8 C -0.118 4.118 9 C 0.588 3.412 10 O -0.543 6.543 11 N -0.633 5.633 12 C 0.121 3.879 13 C -0.102 4.102 14 C 0.121 3.879 15 C -0.131 4.131 16 C 0.154 3.846 17 N -0.604 5.604 18 C -0.221 4.221 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.922 5.922 22 Si 0.913 3.087 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.164 3.836 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.013 0.987 43 H 0.107 0.893 44 H 0.251 0.749 45 H 0.029 0.971 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.389 3.803 11.410 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.044 4.044 3 C -0.146 4.146 4 C -0.118 4.118 5 C -0.148 4.148 6 C -0.050 4.050 7 C -0.177 4.177 8 C -0.121 4.121 9 C 0.377 3.623 10 O -0.421 6.421 11 N -0.367 5.367 12 C -0.001 4.001 13 C -0.103 4.103 14 C -0.001 4.001 15 C -0.171 4.171 16 C 0.029 3.971 17 N -0.330 5.330 18 C -0.350 4.350 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.570 5.570 22 Si 0.744 3.256 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.038 3.962 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.031 0.969 43 H 0.124 0.876 44 H 0.062 0.938 45 H 0.047 0.953 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 13.152 3.640 11.965 18.149 hybrid contribution -0.644 0.519 -0.390 0.914 sum 12.508 4.159 11.575 17.543 Atomic orbital electron populations 1.20916 0.90513 1.03743 1.02871 1.19922 0.96284 0.91670 0.96475 1.20970 0.94275 0.97323 1.02050 1.21231 0.94199 0.98046 0.98310 1.20912 0.99806 0.91592 1.02522 1.19840 0.91789 0.95942 0.97446 1.20866 0.99930 0.94200 1.02703 1.19640 0.93402 0.92974 1.06098 1.17881 0.77847 0.84087 0.82477 1.90782 1.55358 1.65564 1.30373 1.50250 1.56642 1.24453 1.05342 1.23111 0.95785 0.87768 0.93413 1.22432 0.96204 0.96803 0.94863 1.23146 0.98037 1.01157 0.77798 1.22843 1.00365 0.98651 0.95201 1.21970 0.88285 0.93828 0.93022 1.44607 1.18337 1.68994 1.01055 1.19113 0.93365 1.30847 0.91649 0.90472 1.24762 0.98536 1.01286 0.95947 1.69796 1.34441 1.49004 1.03806 0.86017 0.82652 0.78095 0.78860 1.20538 1.21763 1.21724 1.20805 0.90560 0.96399 0.88467 0.90618 0.90707 0.90988 0.85494 0.85730 0.85642 0.90703 0.91000 0.91310 0.89939 0.89590 0.89632 0.89829 0.91371 0.91901 0.96901 0.87568 0.93780 0.95323 0.95878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.62 36.00 0.35 -1.26 16 2 C -0.04 -0.57 5.91 -104.23 -0.62 -1.19 16 3 C -0.13 -1.42 9.69 -39.64 -0.38 -1.81 16 4 C -0.10 -0.99 10.04 -39.49 -0.40 -1.38 16 5 C -0.13 -1.35 9.69 -39.64 -0.38 -1.73 16 6 C -0.05 -0.61 5.91 -104.23 -0.62 -1.23 16 7 C -0.12 -1.27 9.62 36.01 0.35 -0.93 16 8 C -0.12 -1.70 5.37 -104.97 -0.56 -2.26 16 9 C 0.59 9.53 4.42 -12.33 -0.05 9.48 16 10 O -0.54 -10.55 17.83 5.32 0.09 -10.45 16 11 N -0.63 -9.47 3.61 -186.79 -0.68 -10.14 16 12 C 0.12 1.74 8.17 -3.53 -0.03 1.71 16 13 C -0.10 -1.64 0.97 -154.72 -0.15 -1.79 16 14 C 0.12 1.73 7.85 -3.53 -0.03 1.70 16 15 C -0.13 -2.23 6.45 -25.14 -0.16 -2.40 16 16 C 0.15 3.50 5.90 -2.33 -0.01 3.49 16 17 N -0.60 -14.82 3.41 -170.35 -0.58 -15.40 16 18 C -0.22 -6.02 10.28 -15.06 -0.15 -6.17 16 19 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 20 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -26.08 10.09 55.49 0.56 -25.52 16 22 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 C 0.16 3.28 6.74 -3.57 -0.02 3.26 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 29 H 0.07 1.07 7.08 -51.93 -0.37 0.71 16 30 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 35 H 0.07 0.85 7.08 -51.93 -0.37 0.48 16 36 H 0.08 1.23 8.02 -51.93 -0.42 0.81 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.09 1.05 8.02 -51.93 -0.42 0.64 16 39 H 0.08 1.27 8.01 -51.93 -0.42 0.85 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 0.91 7.97 -51.93 -0.41 0.50 16 42 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.11 2.76 5.89 -51.93 -0.31 2.46 16 44 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.03 0.59 8.00 -51.93 -0.42 0.17 16 46 H 0.02 0.48 7.87 -51.93 -0.41 0.07 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -31.71 373.08 -10.28 -41.98 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -7.30 Total: 0.13 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -2.98 Total: -2.86 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.70 Total: -51.07 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.71 -10.28 -41.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073008471.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.251 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds