Wall clock time and date at job start Tue Mar 31 2020 10:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37956 * 120.07312 * 2 1 4 4 C 1.38362 * 120.14405 * 180.27827 * 3 2 1 5 5 C 1.38356 * 120.29258 * 359.73718 * 4 3 2 6 6 C 1.37960 * 120.14655 * 0.02897 * 5 4 3 7 7 C 1.50701 * 120.07251 * 179.97438 * 6 5 4 8 8 C 1.39575 * 119.85084 * 359.97268 * 6 5 4 9 9 C 1.47843 * 120.14177 * 179.97438 * 8 6 5 10 10 O 1.21550 * 120.00115 * 90.00411 * 9 8 6 11 11 N 1.34778 * 119.99622 * 269.99917 * 9 8 6 12 12 C 1.47853 * 134.36072 * 180.02562 * 11 9 8 13 13 C 1.52553 * 85.66560 * 156.40881 * 12 11 9 14 14 C 1.47844 * 134.36800 * 0.06086 * 11 9 8 15 15 C 1.53855 * 115.94160 * 140.70114 * 13 12 11 16 16 C 1.55157 * 101.40978 * 163.66434 * 15 13 12 17 17 N 1.47549 * 105.00403 * 324.35060 * 16 15 13 18 18 C 1.36940 * 125.65391 * 203.90644 * 17 16 15 19 19 H 1.08001 * 119.99535 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.00356 * 0.02562 * 18 17 16 21 21 N 1.31614 * 120.00050 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99685 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47198 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.46785 * 119.99907 * 22 20 18 25 25 H 1.48493 * 109.47082 * 239.99592 * 22 20 18 26 26 C 1.47354 * 108.68084 * 23.92541 * 17 16 15 27 27 H 1.09001 * 109.47422 * 270.21159 * 1 2 3 28 28 H 1.08994 * 109.47755 * 30.21166 * 1 2 3 29 29 H 1.08997 * 109.47366 * 150.21629 * 1 2 3 30 30 H 1.08000 * 119.93250 * 0.02562 * 3 2 1 31 31 H 1.07999 * 119.85375 * 179.72303 * 4 3 2 32 32 H 1.08010 * 119.92886 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.46561 * 270.01692 * 7 6 5 34 34 H 1.08996 * 109.47510 * 30.01282 * 7 6 5 35 35 H 1.09003 * 109.47075 * 150.02118 * 7 6 5 36 36 H 1.08997 * 113.84559 * 42.22078 * 12 11 9 37 37 H 1.09006 * 113.95431 * 270.60749 * 12 11 9 38 38 H 1.09001 * 113.84457 * 89.40266 * 14 11 9 39 39 H 1.09002 * 113.83937 * 317.77390 * 14 11 9 40 40 H 1.09001 * 111.03528 * 45.63184 * 15 13 12 41 41 H 1.09000 * 111.04046 * 281.69400 * 15 13 12 42 42 H 1.08998 * 110.33591 * 83.23420 * 16 15 13 43 43 H 1.09004 * 110.33316 * 205.47085 * 16 15 13 44 44 H 0.96997 * 120.00055 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.98213 * 238.60839 * 26 17 16 46 46 H 1.09000 * 110.01845 * 117.33152 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1939 0.0000 4 6 3.5818 1.1956 -0.0058 5 6 4.2812 0.0018 -0.0062 6 6 3.6021 -1.1991 -0.0013 7 6 4.3655 -2.4984 -0.0023 8 6 2.2064 -1.2079 0.0045 9 6 1.4721 -2.4910 0.0091 10 8 1.1746 -3.0172 1.0637 11 7 1.1325 -3.0773 -1.1560 12 6 0.4192 -4.3206 -1.5183 13 6 0.1130 -3.6228 -2.8399 14 6 1.3254 -2.7337 -2.5810 15 6 0.1824 -4.5048 -4.0986 16 6 -0.5758 -3.6279 -5.1300 17 7 -1.6446 -2.9668 -4.3569 18 6 -2.8172 -2.4805 -4.8704 19 1 -3.5386 -2.0109 -4.2182 20 6 -3.0785 -2.5910 -6.2292 21 7 -2.1991 -3.1628 -7.0241 22 14 -4.6778 -1.9268 -6.9297 23 1 -5.4889 -1.3342 -5.8361 24 1 -4.3787 -0.8844 -7.9442 25 1 -5.4368 -3.0333 -7.5659 26 6 -1.2406 -2.9164 -2.9407 27 1 -0.3634 0.0038 1.0276 28 1 -0.3634 0.8880 -0.5171 29 1 -0.3634 -0.8919 -0.5104 30 1 1.6583 2.1292 0.0004 31 1 4.1183 2.1329 -0.0103 32 1 5.3613 0.0100 -0.0103 33 1 4.5456 -2.8131 -1.0303 34 1 5.3189 -2.3600 0.5075 35 1 3.7842 -3.2618 0.5149 36 1 -0.4629 -4.5162 -0.9086 37 1 1.0688 -5.1902 -1.6193 38 1 2.2527 -3.1186 -3.0054 39 1 1.1561 -1.6810 -2.8072 40 1 -0.3300 -5.4537 -3.9401 41 1 1.2153 -4.6664 -4.4068 42 1 0.0950 -2.8848 -5.5611 43 1 -1.0057 -4.2515 -5.9139 44 1 -2.3819 -3.2404 -7.9736 45 1 -1.9769 -3.4327 -2.3247 46 1 -1.1451 -1.8801 -2.6166 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073008471.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:20 Heat of formation + Delta-G solvation = 31.746649 kcal Electronic energy + Delta-G solvation = -26742.651400 eV Core-core repulsion = 23212.138459 eV Total energy + Delta-G solvation = -3530.512941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.04071 -40.63129 -39.01126 -37.24082 -34.62121 -34.13335 -33.13988 -31.35883 -29.97693 -28.64022 -27.66288 -27.49559 -27.38309 -25.51713 -23.63841 -22.17760 -21.73007 -20.56053 -19.62102 -18.84872 -18.28709 -17.52225 -17.20420 -16.85278 -16.35490 -16.08628 -15.87397 -15.56337 -15.05581 -14.96005 -14.64444 -14.24961 -14.18251 -14.03798 -13.95328 -13.81788 -13.72013 -13.55151 -13.16638 -12.94965 -12.90194 -12.79053 -12.64930 -12.59457 -12.44488 -12.02802 -11.98794 -11.93002 -11.76639 -11.52601 -11.34410 -10.83630 -10.70297 -9.83268 -9.76298 -9.58018 -8.87245 -7.76379 -5.20016 0.13795 0.35225 1.44785 1.47591 1.47939 1.58053 1.74705 2.49551 2.67524 3.20696 3.30465 3.45094 3.63963 3.66945 3.75185 3.80831 4.01214 4.11240 4.16335 4.32511 4.35489 4.37582 4.48414 4.50170 4.56465 4.57720 4.61745 4.68710 4.72085 4.74966 4.81460 4.83805 4.86794 4.94211 5.08908 5.09958 5.14336 5.19677 5.22021 5.44581 5.47521 5.48395 5.53463 5.69863 5.85520 5.97652 6.34078 6.56535 6.97738 7.13386 7.79181 8.42665 9.25130 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017574 B = 0.003638 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.912580 B = 7694.140248 C = 8305.633513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.133 4.133 4 C -0.094 4.094 5 C -0.128 4.128 6 C -0.061 4.061 7 C -0.117 4.117 8 C -0.147 4.147 9 C 0.590 3.410 10 O -0.585 6.585 11 N -0.632 5.632 12 C 0.126 3.874 13 C -0.095 4.095 14 C 0.131 3.869 15 C -0.111 4.111 16 C 0.154 3.846 17 N -0.624 5.624 18 C -0.239 4.239 19 H 0.074 0.926 20 C -0.060 4.060 21 N -0.944 5.944 22 Si 0.975 3.025 23 H -0.271 1.271 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.163 3.837 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.147 0.853 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.099 0.901 42 H -0.007 1.007 43 H 0.072 0.928 44 H 0.247 0.753 45 H 0.022 0.978 46 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.672 4.631 11.837 20.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.065 4.065 3 C -0.151 4.151 4 C -0.112 4.112 5 C -0.145 4.145 6 C -0.062 4.062 7 C -0.173 4.173 8 C -0.150 4.150 9 C 0.381 3.619 10 O -0.467 6.467 11 N -0.365 5.365 12 C 0.004 3.996 13 C -0.097 4.097 14 C 0.009 3.991 15 C -0.150 4.150 16 C 0.030 3.970 17 N -0.351 5.351 18 C -0.368 4.368 19 H 0.092 0.908 20 C -0.253 4.253 21 N -0.594 5.594 22 Si 0.804 3.196 23 H -0.196 1.196 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.038 3.962 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.063 0.937 30 H 0.164 0.836 31 H 0.176 0.824 32 H 0.174 0.826 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.117 0.883 42 H 0.011 0.989 43 H 0.090 0.910 44 H 0.057 0.943 45 H 0.039 0.961 46 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 15.441 4.467 12.395 20.298 hybrid contribution -1.354 0.324 -0.510 1.483 sum 14.087 4.792 11.885 19.044 Atomic orbital electron populations 1.20859 0.91210 1.02991 1.02607 1.20050 0.96131 0.92461 0.97868 1.21260 0.95229 0.97154 1.01446 1.21668 0.93757 0.99443 0.96284 1.21306 1.01385 0.90828 1.01000 1.20133 0.91062 0.97557 0.97407 1.20875 1.00323 0.92779 1.03365 1.19680 0.94497 0.92135 1.08698 1.18207 0.77265 0.84491 0.81916 1.90742 1.57302 1.66869 1.31775 1.50262 1.56205 1.24552 1.05481 1.23184 0.96212 0.88551 0.91631 1.22237 0.94741 0.97093 0.95586 1.23184 0.98327 1.00318 0.77230 1.22675 1.01529 0.97544 0.93248 1.21788 0.87895 0.93481 0.93859 1.44890 1.18128 1.69037 1.03003 1.19413 0.94497 1.30826 0.92080 0.90793 1.25519 1.01543 1.01968 0.96282 1.70035 1.35840 1.49896 1.03607 0.85061 0.79252 0.77266 0.78053 1.19575 1.21820 1.21709 1.20866 0.92844 0.96414 0.86120 0.90738 0.89365 0.93680 0.83555 0.82384 0.82556 0.89587 0.88668 0.93698 0.90820 0.86376 0.86383 0.90964 0.90869 0.88280 0.98915 0.90999 0.94279 0.96053 0.96667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.20 9.62 71.23 0.69 -2.51 16 2 C -0.06 -1.69 5.91 -19.61 -0.12 -1.80 16 3 C -0.13 -2.67 9.69 22.23 0.22 -2.46 16 4 C -0.09 -1.53 10.04 22.33 0.22 -1.30 16 5 C -0.13 -2.19 9.69 22.23 0.22 -1.97 16 6 C -0.06 -1.38 5.91 -19.61 -0.12 -1.49 16 7 C -0.12 -2.21 9.62 71.24 0.69 -1.53 16 8 C -0.15 -4.15 5.37 -20.09 -0.11 -4.26 16 9 C 0.59 19.24 4.42 86.79 0.38 19.63 16 10 O -0.59 -23.34 17.83 -3.87 -0.07 -23.41 16 11 N -0.63 -18.46 3.61 -863.15 -3.12 -21.58 16 12 C 0.13 3.44 8.17 85.97 0.70 4.15 16 13 C -0.10 -2.97 0.97 -52.11 -0.05 -3.02 16 14 C 0.13 3.55 7.85 85.97 0.67 4.23 16 15 C -0.11 -3.60 6.45 31.62 0.20 -3.40 16 16 C 0.15 7.14 5.90 86.92 0.51 7.65 16 17 N -0.62 -31.43 3.41 -692.86 -2.36 -33.80 16 18 C -0.24 -13.33 10.28 84.03 0.86 -12.46 16 19 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 20 C -0.06 -3.36 5.49 84.86 0.47 -2.90 16 21 N -0.94 -54.77 10.09 21.65 0.22 -54.55 16 22 Si 0.97 45.23 29.55 68.60 2.03 47.26 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 25 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 26 C 0.16 6.67 6.74 86.22 0.58 7.25 16 27 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.09 2.00 8.09 -2.39 -0.02 1.98 16 29 H 0.04 1.41 7.08 -2.39 -0.02 1.39 16 30 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 31 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 33 H 0.09 1.40 8.14 -2.38 -0.02 1.39 16 34 H 0.09 1.31 8.09 -2.39 -0.02 1.29 16 35 H 0.04 1.07 7.08 -2.39 -0.02 1.05 16 36 H 0.07 2.17 8.02 -2.39 -0.02 2.15 16 37 H 0.12 2.54 8.14 -2.38 -0.02 2.53 16 38 H 0.12 2.49 8.02 -2.39 -0.02 2.47 16 39 H 0.07 2.15 8.01 -2.39 -0.02 2.13 16 40 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.10 2.53 7.97 -2.39 -0.02 2.51 16 42 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 43 H 0.07 3.85 5.89 -2.38 -0.01 3.83 16 44 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 45 H 0.02 0.90 8.00 -2.39 -0.02 0.89 16 46 H 0.02 0.65 7.87 -2.39 -0.02 0.63 16 Total: -1.00 -72.12 373.08 3.68 -68.44 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.96 Total: 13.85 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 6.02 Total: 3.79 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -5.26 Total: -109.93 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.07 Total: -23.41 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -72.12 3.68 -68.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073008471.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.185 kcal (2) G-P(sol) polarization free energy of solvation -72.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds