Wall clock time and date at job start Tue Mar 31 2020 11:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50707 * 109.47007 * 2 1 4 4 C 1.38359 * 119.85260 * 269.72405 * 3 2 1 5 5 C 1.37958 * 120.14359 * 179.76597 * 4 3 2 6 6 C 1.39572 * 119.85262 * 0.51088 * 5 4 3 7 7 C 1.47844 * 120.14797 * 179.72652 * 6 5 4 8 8 O 1.21555 * 120.00291 * 186.68499 * 7 6 5 9 9 N 1.34778 * 119.99615 * 6.67939 * 7 6 5 10 10 C 1.47388 * 135.85551 * 5.18763 * 9 7 6 11 11 C 1.52066 * 87.40981 * 154.38930 * 10 9 7 12 12 C 1.47397 * 135.85159 * 185.56294 * 9 7 6 13 13 C 1.53516 * 117.21637 * 267.28265 * 11 10 9 14 14 C 1.54629 * 102.70164 * 262.93071 * 13 11 10 15 15 N 1.47147 * 107.38101 * 339.38527 * 14 13 11 16 16 C 1.36938 * 125.58334 * 179.12587 * 15 14 13 17 17 H 1.07996 * 120.00004 * 179.97438 * 16 15 14 18 18 C 1.38814 * 119.99748 * 359.96964 * 16 15 14 19 19 N 1.31615 * 120.00048 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99803 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47040 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47063 * 119.99877 * 20 18 16 23 23 H 1.48500 * 109.47028 * 240.00485 * 20 18 16 24 24 C 1.47755 * 108.83724 * 359.08523 * 15 14 13 25 25 C 1.39579 * 119.71417 * 359.74259 * 6 5 4 26 26 C 1.37966 * 119.85152 * 0.02562 * 25 6 5 27 27 H 1.09003 * 109.47093 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47251 * 299.99530 * 1 2 3 29 29 H 1.09000 * 109.47277 * 60.00286 * 1 2 3 30 30 H 1.09000 * 109.47277 * 119.99714 * 2 1 3 31 31 H 1.09003 * 109.47551 * 240.00023 * 2 1 3 32 32 H 1.08001 * 119.92433 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.07413 * 180.27529 * 5 4 3 34 34 H 1.08997 * 113.55071 * 269.00617 * 10 9 7 35 35 H 1.09004 * 113.53759 * 39.68072 * 10 9 7 36 36 H 1.08996 * 113.54167 * 320.32541 * 12 9 7 37 37 H 1.09001 * 113.54289 * 90.93287 * 12 9 7 38 38 H 1.08994 * 110.76596 * 21.23269 * 13 11 10 39 39 H 1.09004 * 110.76597 * 144.62808 * 13 11 10 40 40 H 1.08996 * 109.86711 * 98.83589 * 14 13 11 41 41 H 1.09006 * 109.86744 * 219.79741 * 14 13 11 42 42 H 0.97000 * 120.00250 * 179.97438 * 19 18 16 43 43 H 1.09005 * 110.40774 * 263.50758 * 24 15 14 44 44 H 1.08997 * 110.40339 * 141.07970 * 24 15 14 45 45 H 1.07998 * 120.08158 * 179.97438 * 25 6 5 46 46 H 1.07992 * 119.93041 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2673 2.0683 -1.2000 5 6 2.7225 3.3706 -1.2070 6 6 2.9562 4.0314 -0.0001 7 6 3.4499 5.4250 0.0000 8 8 3.7680 5.9571 1.0456 9 7 3.5473 6.1054 -1.1593 10 6 3.1853 5.8553 -2.5660 11 6 3.0991 7.3636 -2.7399 12 6 4.0682 7.4206 -1.5732 13 6 1.7246 8.0163 -2.5368 14 6 1.1910 8.1423 -3.9826 15 7 2.3504 8.0769 -4.8863 16 6 2.2993 8.1351 -6.2535 17 1 3.2103 8.0789 -6.8307 18 6 1.0766 8.2664 -6.8973 19 7 -0.0336 8.3354 -6.1938 20 14 1.0068 8.3452 -8.7624 21 1 2.3823 8.2479 -9.3137 22 1 0.1867 7.2184 -9.2751 23 1 0.3963 9.6325 -9.1809 24 6 3.5789 7.9390 -4.0770 25 6 2.7221 3.3708 1.2070 26 6 2.2623 2.0700 1.2000 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.0907 1.5541 -2.1332 33 1 2.9014 3.8763 -2.1444 34 1 3.9850 5.3951 -3.1463 35 1 2.2288 5.3463 -2.6855 36 1 3.8491 8.2185 -0.8637 37 1 5.1156 7.3990 -1.8743 38 1 1.0763 7.3745 -1.9402 39 1 1.8276 8.9987 -2.0758 40 1 0.5069 7.3216 -4.1978 41 1 0.6762 9.0952 -4.1057 42 1 -0.8880 8.4275 -6.6436 43 1 4.0459 8.9123 -3.9261 44 1 4.2757 7.2525 -4.5579 45 1 2.9013 3.8763 2.1444 46 1 2.0803 1.5578 2.1332 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073398704.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:02 Heat of formation + Delta-G solvation = 56.026660 kcal Electronic energy + Delta-G solvation = -25923.457116 eV Core-core repulsion = 22393.997035 eV Total energy + Delta-G solvation = -3529.460081 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.90136 -39.49902 -37.96278 -35.70872 -34.32317 -32.28425 -31.19654 -30.27748 -29.25026 -28.53455 -26.19100 -25.94669 -24.49842 -23.55333 -22.69300 -21.47174 -20.33113 -19.65062 -18.52916 -17.27356 -16.83220 -16.38898 -15.77671 -15.43576 -15.19476 -14.94534 -14.61916 -14.19900 -14.04126 -13.84129 -13.72384 -13.57076 -13.37921 -13.01210 -12.67266 -12.43750 -12.23835 -11.99631 -11.96502 -11.85768 -11.50699 -11.31208 -11.09044 -10.96996 -10.94177 -10.64569 -10.45495 -10.22164 -10.10324 -9.88702 -9.67770 -9.59143 -9.11933 -8.92293 -8.63281 -8.52961 -6.87090 -5.74404 -3.08244 0.74947 1.24495 2.82540 2.89622 3.37590 3.43373 3.45729 3.76974 4.33478 4.44155 4.52406 4.55443 4.65090 4.83809 4.89296 4.94316 5.06444 5.18139 5.25319 5.27435 5.32421 5.44268 5.47507 5.59552 5.60386 5.63776 5.65468 5.68693 5.78893 5.80821 5.84275 5.90220 5.94292 6.12957 6.19039 6.21294 6.30145 6.38688 6.43858 6.50646 6.63529 6.67837 6.75717 7.53098 7.58678 7.79357 7.81115 8.20937 8.22307 9.18293 9.78377 10.43866 11.37117 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014283 B = 0.003313 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.945198 B = 8448.692242 C = 9843.290774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.061 4.061 4 C -0.126 4.126 5 C -0.089 4.089 6 C -0.132 4.132 7 C 0.584 3.416 8 O -0.548 6.548 9 N -0.638 5.638 10 C 0.113 3.887 11 C -0.104 4.104 12 C 0.120 3.880 13 C -0.117 4.117 14 C 0.179 3.821 15 N -0.605 5.605 16 C -0.228 4.228 17 H 0.079 0.921 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 0.911 3.089 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.153 3.847 25 C -0.059 4.059 26 C -0.130 4.130 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.128 0.872 33 H 0.140 0.860 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.044 0.956 42 H 0.252 0.748 43 H 0.027 0.973 44 H 0.043 0.957 45 H 0.134 0.866 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.367 -13.915 12.126 18.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.061 4.061 4 C -0.144 4.144 5 C -0.108 4.108 6 C -0.135 4.135 7 C 0.376 3.624 8 O -0.427 6.427 9 N -0.372 5.372 10 C -0.009 4.009 11 C -0.106 4.106 12 C -0.003 4.003 13 C -0.155 4.155 14 C 0.055 3.945 15 N -0.331 5.331 16 C -0.356 4.356 17 H 0.097 0.903 18 C -0.204 4.204 19 N -0.568 5.568 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.027 3.973 25 C -0.078 4.078 26 C -0.148 4.148 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.146 0.854 33 H 0.157 0.843 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.045 0.955 44 H 0.061 0.939 45 H 0.152 0.848 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.350 -13.722 12.708 19.202 hybrid contribution -0.116 0.045 -1.043 1.051 sum 4.234 -13.677 11.665 18.468 Atomic orbital electron populations 1.21754 0.94384 1.01841 1.02555 1.20609 0.96460 0.92409 1.03039 1.20141 0.96529 0.96214 0.93220 1.21031 1.00767 0.94787 0.97844 1.21899 0.95942 0.94752 0.98169 1.19894 1.05071 0.94068 0.94473 1.17808 0.77780 0.84946 0.81893 1.90744 1.51571 1.69840 1.30544 1.49661 1.60650 1.19907 1.06939 1.23050 1.01067 0.97530 0.79283 1.22198 0.97522 0.94761 0.96135 1.22793 0.98258 0.84787 0.94426 1.22471 0.93413 0.99141 1.00519 1.21220 0.89204 1.01097 0.82997 1.44549 1.00221 1.86528 1.01823 1.19088 0.93128 1.43304 0.80095 0.90336 1.24798 0.95421 1.02183 0.98002 1.69969 0.97084 1.56583 1.33199 0.86060 0.77395 0.77262 0.85124 1.20506 1.21787 1.21792 1.21144 0.90816 0.97128 0.88254 1.21243 0.94991 0.93975 0.97618 1.20977 1.01340 0.94731 0.97740 0.92284 0.92458 0.92247 0.90893 0.90765 0.85423 0.84270 0.89254 0.89587 0.90291 0.89618 0.92091 0.91730 0.93525 0.93777 0.93797 0.95497 0.93904 0.84830 0.85562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.15 0.37 -0.68 16 2 C -0.09 -0.64 6.06 -27.88 -0.17 -0.81 16 3 C -0.06 -0.60 5.14 -104.53 -0.54 -1.13 16 4 C -0.13 -1.35 9.68 -39.64 -0.38 -1.73 16 5 C -0.09 -1.10 9.15 -39.19 -0.36 -1.46 16 6 C -0.13 -1.85 5.87 -104.97 -0.62 -2.46 16 7 C 0.58 9.55 8.01 -12.33 -0.10 9.45 16 8 O -0.55 -10.50 17.14 5.32 0.09 -10.41 16 9 N -0.64 -9.61 3.68 -186.87 -0.69 -10.30 16 10 C 0.11 1.61 5.43 -7.33 -0.04 1.57 16 11 C -0.10 -1.68 1.06 -155.22 -0.16 -1.84 16 12 C 0.12 1.71 8.03 -7.47 -0.06 1.65 16 13 C -0.12 -2.12 6.40 -25.61 -0.16 -2.28 16 14 C 0.18 4.16 5.39 -2.83 -0.02 4.14 16 15 N -0.60 -14.51 3.41 -170.53 -0.58 -15.09 16 16 C -0.23 -6.06 10.28 -15.06 -0.15 -6.21 16 17 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 18 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 19 N -0.92 -26.28 10.30 55.49 0.57 -25.70 16 20 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.15 2.87 6.70 -3.22 -0.02 2.85 16 25 C -0.06 -0.74 9.59 -39.18 -0.38 -1.12 16 26 C -0.13 -1.33 9.68 -39.64 -0.38 -1.71 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.14 1.66 4.18 -52.49 -0.22 1.44 16 34 H 0.09 1.13 8.04 -51.93 -0.42 0.71 16 35 H 0.09 1.25 6.83 -51.93 -0.35 0.90 16 36 H 0.08 1.14 8.13 -51.93 -0.42 0.72 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.05 1.20 7.39 -51.93 -0.38 0.81 16 41 H 0.04 1.15 7.49 -51.93 -0.39 0.76 16 42 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.04 0.76 8.00 -51.93 -0.42 0.34 16 45 H 0.13 1.64 7.67 -52.49 -0.40 1.24 16 46 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 370.33 15.07 5.58 5.58 Total: -1.00 -31.51 370.33 -10.51 -42.03 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.19 Total: -0.47 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -3.27 Total: -2.09 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -0.70 Total: -51.09 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.51 -10.51 -42.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073398704.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.052 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds