Wall clock time and date at job start Tue Mar 31 2020 11:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50707 * 109.47007 * 2 1 4 4 C 1.38359 * 119.85260 * 269.72405 * 3 2 1 5 5 C 1.37958 * 120.14359 * 179.76597 * 4 3 2 6 6 C 1.39572 * 119.85262 * 0.51088 * 5 4 3 7 7 C 1.47844 * 120.14797 * 179.72652 * 6 5 4 8 8 O 1.21555 * 120.00291 * 186.68499 * 7 6 5 9 9 N 1.34778 * 119.99615 * 6.67939 * 7 6 5 10 10 C 1.47388 * 135.85551 * 5.18763 * 9 7 6 11 11 C 1.52066 * 87.40981 * 154.38930 * 10 9 7 12 12 C 1.47397 * 135.85159 * 185.56294 * 9 7 6 13 13 C 1.53516 * 117.21637 * 267.28265 * 11 10 9 14 14 C 1.54629 * 102.70164 * 262.93071 * 13 11 10 15 15 N 1.47147 * 107.38101 * 339.38527 * 14 13 11 16 16 C 1.36938 * 125.58334 * 179.12587 * 15 14 13 17 17 H 1.07996 * 120.00004 * 179.97438 * 16 15 14 18 18 C 1.38814 * 119.99748 * 359.96964 * 16 15 14 19 19 N 1.31615 * 120.00048 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99803 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47040 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47063 * 119.99877 * 20 18 16 23 23 H 1.48500 * 109.47028 * 240.00485 * 20 18 16 24 24 C 1.47755 * 108.83724 * 359.08523 * 15 14 13 25 25 C 1.39579 * 119.71417 * 359.74259 * 6 5 4 26 26 C 1.37966 * 119.85152 * 0.02562 * 25 6 5 27 27 H 1.09003 * 109.47093 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47251 * 299.99530 * 1 2 3 29 29 H 1.09000 * 109.47277 * 60.00286 * 1 2 3 30 30 H 1.09000 * 109.47277 * 119.99714 * 2 1 3 31 31 H 1.09003 * 109.47551 * 240.00023 * 2 1 3 32 32 H 1.08001 * 119.92433 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.07413 * 180.27529 * 5 4 3 34 34 H 1.08997 * 113.55071 * 269.00617 * 10 9 7 35 35 H 1.09004 * 113.53759 * 39.68072 * 10 9 7 36 36 H 1.08996 * 113.54167 * 320.32541 * 12 9 7 37 37 H 1.09001 * 113.54289 * 90.93287 * 12 9 7 38 38 H 1.08994 * 110.76596 * 21.23269 * 13 11 10 39 39 H 1.09004 * 110.76597 * 144.62808 * 13 11 10 40 40 H 1.08996 * 109.86711 * 98.83589 * 14 13 11 41 41 H 1.09006 * 109.86744 * 219.79741 * 14 13 11 42 42 H 0.97000 * 120.00250 * 179.97438 * 19 18 16 43 43 H 1.09005 * 110.40774 * 263.50758 * 24 15 14 44 44 H 1.08997 * 110.40339 * 141.07970 * 24 15 14 45 45 H 1.07998 * 120.08158 * 179.97438 * 25 6 5 46 46 H 1.07992 * 119.93041 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2673 2.0683 -1.2000 5 6 2.7225 3.3706 -1.2070 6 6 2.9562 4.0314 -0.0001 7 6 3.4499 5.4250 0.0000 8 8 3.7680 5.9571 1.0456 9 7 3.5473 6.1054 -1.1593 10 6 3.1853 5.8553 -2.5660 11 6 3.0991 7.3636 -2.7399 12 6 4.0682 7.4206 -1.5732 13 6 1.7246 8.0163 -2.5368 14 6 1.1910 8.1423 -3.9826 15 7 2.3504 8.0769 -4.8863 16 6 2.2993 8.1351 -6.2535 17 1 3.2103 8.0789 -6.8307 18 6 1.0766 8.2664 -6.8973 19 7 -0.0336 8.3354 -6.1938 20 14 1.0068 8.3452 -8.7624 21 1 2.3823 8.2479 -9.3137 22 1 0.1867 7.2184 -9.2751 23 1 0.3963 9.6325 -9.1809 24 6 3.5789 7.9390 -4.0770 25 6 2.7221 3.3708 1.2070 26 6 2.2623 2.0700 1.2000 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.0907 1.5541 -2.1332 33 1 2.9014 3.8763 -2.1444 34 1 3.9850 5.3951 -3.1463 35 1 2.2288 5.3463 -2.6855 36 1 3.8491 8.2185 -0.8637 37 1 5.1156 7.3990 -1.8743 38 1 1.0763 7.3745 -1.9402 39 1 1.8276 8.9987 -2.0758 40 1 0.5069 7.3216 -4.1978 41 1 0.6762 9.0952 -4.1057 42 1 -0.8880 8.4275 -6.6436 43 1 4.0459 8.9123 -3.9261 44 1 4.2757 7.2525 -4.5579 45 1 2.9013 3.8763 2.1444 46 1 2.0803 1.5578 2.1332 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073398704.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:01 Heat of formation + Delta-G solvation = 39.022568 kcal Electronic energy + Delta-G solvation = -25924.194469 eV Core-core repulsion = 22393.997035 eV Total energy + Delta-G solvation = -3530.197434 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.13365 -40.50892 -39.17910 -37.34468 -35.08567 -34.09082 -32.15307 -31.44527 -30.75662 -29.84692 -27.52015 -27.31208 -25.82637 -24.80246 -23.56630 -22.31968 -22.11066 -20.78012 -19.89673 -18.64093 -18.36518 -17.59763 -16.84703 -16.74269 -16.43281 -16.21348 -15.99318 -15.58476 -15.26248 -15.05440 -14.64651 -14.46460 -14.21554 -14.12188 -14.04733 -13.78027 -13.68212 -13.36698 -13.31196 -12.85805 -12.78971 -12.72006 -12.35729 -12.16775 -11.99514 -11.96309 -11.89832 -11.82829 -11.71821 -11.66443 -11.20342 -10.89729 -10.66945 -9.99220 -9.93021 -9.61963 -8.84344 -7.80062 -5.14899 -0.19190 0.38298 1.50188 1.50884 1.60803 1.70179 1.76765 2.53364 2.81823 3.19171 3.34580 3.44620 3.56573 3.74483 3.83903 3.85084 3.98427 4.05438 4.20334 4.22109 4.35832 4.41610 4.46780 4.51738 4.52329 4.58912 4.63903 4.66427 4.69798 4.83107 4.89789 4.98500 4.99159 5.03230 5.10243 5.12639 5.15600 5.20530 5.31934 5.39657 5.41006 5.52344 5.60549 5.67658 5.80689 5.92223 6.23249 6.59739 7.00380 7.14623 7.82097 8.46513 9.30568 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014283 B = 0.003313 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.945198 B = 8448.692242 C = 9843.290774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.055 4.055 4 C -0.131 4.131 5 C -0.095 4.095 6 C -0.157 4.157 7 C 0.580 3.420 8 O -0.586 6.586 9 N -0.638 5.638 10 C 0.120 3.880 11 C -0.099 4.099 12 C 0.126 3.874 13 C -0.103 4.103 14 C 0.191 3.809 15 N -0.624 5.624 16 C -0.233 4.233 17 H 0.088 0.912 18 C -0.068 4.068 19 N -0.953 5.953 20 Si 0.975 3.025 21 H -0.263 1.263 22 H -0.294 1.294 23 H -0.298 1.298 24 C 0.152 3.848 25 C -0.071 4.071 26 C -0.127 4.127 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.147 0.853 33 H 0.141 0.859 34 H 0.114 0.886 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.013 0.987 41 H 0.004 0.996 42 H 0.244 0.756 43 H 0.035 0.965 44 H 0.061 0.939 45 H 0.127 0.873 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.728 -16.034 12.151 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.055 4.055 4 C -0.149 4.149 5 C -0.113 4.113 6 C -0.160 4.160 7 C 0.373 3.627 8 O -0.468 6.468 9 N -0.371 5.371 10 C -0.002 4.002 11 C -0.101 4.101 12 C 0.003 3.997 13 C -0.142 4.142 14 C 0.066 3.934 15 N -0.351 5.351 16 C -0.362 4.362 17 H 0.106 0.894 18 C -0.261 4.261 19 N -0.602 5.602 20 Si 0.804 3.196 21 H -0.187 1.187 22 H -0.221 1.221 23 H -0.226 1.226 24 C 0.027 3.973 25 C -0.090 4.090 26 C -0.145 4.145 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.165 0.835 33 H 0.159 0.841 34 H 0.132 0.868 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.131 0.869 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.031 0.969 41 H 0.022 0.978 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.079 0.921 45 H 0.145 0.855 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.754 -15.845 12.726 21.122 hybrid contribution -0.539 0.669 -1.031 1.342 sum 5.215 -15.177 11.696 19.857 Atomic orbital electron populations 1.21756 0.94199 1.02670 1.01901 1.20679 0.96432 0.90717 1.04456 1.20509 0.94941 0.97402 0.92676 1.21319 1.00156 0.94243 0.99177 1.21945 0.96296 0.95521 0.97562 1.19859 1.07195 0.93225 0.95734 1.18212 0.77224 0.85785 0.81480 1.90711 1.53492 1.70902 1.31731 1.49654 1.60333 1.20099 1.06997 1.23109 1.01891 0.96156 0.79039 1.22012 0.96439 0.95965 0.95636 1.22849 0.99091 0.84574 0.93136 1.22260 0.94744 1.00143 0.97016 1.20890 0.88899 0.97590 0.86019 1.44822 1.02263 1.86316 1.01686 1.19506 0.93331 1.41655 0.81674 0.89422 1.25604 0.95341 1.02975 1.02133 1.70191 0.97263 1.58267 1.34518 0.85057 0.77847 0.76401 0.80325 1.18715 1.22145 1.22557 1.21310 0.89183 0.98072 0.88734 1.21343 0.95665 0.95029 0.97001 1.21266 1.00211 0.93818 0.99192 0.90760 0.92827 0.93227 0.89294 0.89621 0.83508 0.84149 0.86778 0.89985 0.90427 0.86874 0.91617 0.90890 0.96882 0.97786 0.94653 0.94676 0.92098 0.85457 0.83004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.89 71.98 0.71 -1.00 16 2 C -0.09 -0.97 6.06 29.85 0.18 -0.79 16 3 C -0.05 -0.94 5.14 -19.80 -0.10 -1.05 16 4 C -0.13 -2.53 9.68 22.23 0.22 -2.31 16 5 C -0.10 -2.23 9.15 22.53 0.21 -2.03 16 6 C -0.16 -4.32 5.87 -20.09 -0.12 -4.44 16 7 C 0.58 18.78 8.01 86.79 0.69 19.47 16 8 O -0.59 -22.65 17.14 -3.89 -0.07 -22.72 16 9 N -0.64 -18.40 3.68 -863.40 -3.17 -21.58 16 10 C 0.12 3.21 5.43 83.76 0.45 3.67 16 11 C -0.10 -3.02 1.06 -52.62 -0.06 -3.08 16 12 C 0.13 3.32 8.03 83.67 0.67 4.00 16 13 C -0.10 -3.73 6.40 31.32 0.20 -3.53 16 14 C 0.19 9.14 5.39 86.81 0.47 9.61 16 15 N -0.62 -29.97 3.41 -693.44 -2.36 -32.33 16 16 C -0.23 -12.33 10.28 84.03 0.86 -11.47 16 17 H 0.09 4.38 7.83 -2.91 -0.02 4.36 16 18 C -0.07 -3.74 5.49 84.86 0.47 -3.28 16 19 N -0.95 -56.26 10.30 21.65 0.22 -56.04 16 20 Si 0.97 44.50 29.55 68.60 2.03 46.53 16 21 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 23 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 24 C 0.15 5.43 6.70 86.23 0.58 6.00 16 25 C -0.07 -1.74 9.59 22.53 0.22 -1.53 16 26 C -0.13 -2.35 9.68 22.23 0.22 -2.14 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 0.77 8.08 -2.39 -0.02 0.75 16 31 H 0.09 0.82 8.08 -2.39 -0.02 0.80 16 32 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.14 3.15 4.18 -2.91 -0.01 3.13 16 34 H 0.11 2.55 8.04 -2.39 -0.02 2.53 16 35 H 0.08 2.30 6.83 -2.38 -0.02 2.29 16 36 H 0.08 2.11 8.13 -2.39 -0.02 2.09 16 37 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.07 2.30 8.07 -2.39 -0.02 2.29 16 39 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.01 0.70 7.39 -2.39 -0.02 0.68 16 41 H 0.00 0.21 7.49 -2.38 -0.02 0.20 16 42 H 0.24 14.13 8.31 -92.71 -0.77 13.35 16 43 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.06 1.97 8.00 -2.39 -0.02 1.95 16 45 H 0.13 3.18 7.67 -2.91 -0.02 3.16 16 46 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -70.12 370.33 3.48 -66.65 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.96 Total: 13.37 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 5.87 Total: 6.12 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -5.31 Total: -109.95 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.07 Total: -22.72 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -70.12 3.48 -66.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073398704.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.670 kcal (2) G-P(sol) polarization free energy of solvation -70.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds