Wall clock time and date at job start Tue Mar 31 2020 10:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38382 * 119.85305 * 2 1 4 4 C 1.37942 * 120.14634 * 179.97438 * 3 2 1 5 5 C 1.39589 * 119.84961 * 0.02670 * 4 3 2 6 6 C 1.47846 * 120.14278 * 180.02562 * 5 4 3 7 7 O 1.21554 * 120.00483 * 139.74452 * 6 5 4 8 8 N 1.34777 * 120.00147 * 319.75275 * 6 5 4 9 9 C 1.47395 * 135.84935 * 4.58889 * 8 6 5 10 10 C 1.52073 * 87.41039 * 154.39324 * 9 8 6 11 11 C 1.47387 * 135.85737 * 184.96211 * 8 6 5 12 12 C 1.53513 * 117.20900 * 267.27943 * 10 9 8 13 13 C 1.54631 * 102.70371 * 262.92958 * 12 10 9 14 14 N 1.47151 * 107.37561 * 339.38341 * 13 12 10 15 15 C 1.36939 * 125.58021 * 179.04012 * 14 13 12 16 16 H 1.07992 * 119.99682 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99513 * 0.02757 * 15 14 13 18 18 N 1.31612 * 120.00454 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99277 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47419 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46834 * 120.00282 * 19 17 15 22 22 H 1.48502 * 109.47052 * 239.99848 * 19 17 15 23 23 C 1.47757 * 108.83700 * 359.09260 * 14 13 12 24 24 C 1.39559 * 119.71527 * 0.27325 * 5 4 3 25 25 C 1.50696 * 120.07343 * 179.72386 * 24 5 4 26 26 C 1.37976 * 119.84786 * 359.42397 * 24 5 4 27 27 H 1.08998 * 109.47551 * 89.99406 * 1 2 3 28 28 H 1.09004 * 109.47155 * 210.00233 * 1 2 3 29 29 H 1.09004 * 109.47014 * 329.99279 * 1 2 3 30 30 H 1.08006 * 119.93157 * 359.97438 * 3 2 1 31 31 H 1.08003 * 120.07114 * 180.02562 * 4 3 2 32 32 H 1.09000 * 113.54020 * 269.00236 * 9 8 6 33 33 H 1.08998 * 113.54614 * 39.67733 * 9 8 6 34 34 H 1.08995 * 113.54664 * 320.32224 * 11 8 6 35 35 H 1.09000 * 113.54354 * 90.92853 * 11 8 6 36 36 H 1.09000 * 110.76617 * 21.23069 * 12 10 9 37 37 H 1.09004 * 110.76707 * 144.62397 * 12 10 9 38 38 H 1.08994 * 109.86674 * 98.83293 * 13 12 10 39 39 H 1.09002 * 109.86389 * 219.93734 * 13 12 10 40 40 H 0.97007 * 120.00096 * 179.97438 * 18 17 15 41 41 H 1.09005 * 110.40045 * 263.49608 * 23 14 13 42 42 H 1.09005 * 110.40546 * 141.07909 * 23 14 13 43 43 H 1.08999 * 109.47130 * 93.07399 * 25 24 5 44 44 H 1.09000 * 109.47050 * 213.07099 * 25 24 5 45 45 H 1.09004 * 109.47312 * 333.07760 * 25 24 5 46 46 H 1.08002 * 119.92381 * 180.32341 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5752 1.2073 0.0005 5 6 4.2761 0.0001 0.0005 6 6 5.7546 0.0001 0.0017 7 8 6.3619 -0.8035 0.6820 8 7 6.4291 0.8913 -0.7515 9 6 6.0723 2.0344 -1.6109 10 6 7.4599 2.5898 -1.3304 11 6 7.8438 1.1430 -1.0795 12 6 7.6014 3.5629 -0.1515 13 6 7.5391 4.9451 -0.8421 14 7 7.8768 4.7435 -2.2601 15 6 7.9146 5.7222 -3.2170 16 1 8.1745 5.4723 -4.2350 17 6 7.6190 7.0356 -2.8785 18 7 7.3018 7.3401 -1.6380 19 14 7.6713 8.3708 -4.1838 20 1 8.0515 7.7727 -5.4888 21 1 6.3321 9.0018 -4.3004 22 1 8.6713 9.3994 -3.8000 23 6 8.1670 3.3118 -2.4825 24 6 3.5754 -1.2068 -0.0058 25 6 4.3240 -2.5146 -0.0122 26 6 2.1956 -1.1997 0.0000 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5140 30 1 1.6522 2.1335 -0.0004 31 1 4.1116 2.1447 0.0010 32 1 5.9151 1.7621 -2.6546 33 1 5.2664 2.6476 -1.2076 34 1 8.5171 1.0117 -0.2325 35 1 8.1831 0.6201 -1.9737 36 1 6.7752 3.4436 0.5494 37 1 8.5588 3.4247 0.3509 38 1 6.5339 5.3573 -0.7557 39 1 8.2596 5.6216 -0.3823 40 1 7.0956 8.2579 -1.4014 41 1 9.2412 3.1312 -2.4420 42 1 7.7619 2.9863 -3.4407 43 1 4.4563 -2.8625 1.0123 44 1 3.7572 -3.2549 -0.5769 45 1 5.2999 -2.3725 -0.4765 46 1 1.6521 -2.1330 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073400044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:31 Heat of formation + Delta-G solvation = 52.957304 kcal Electronic energy + Delta-G solvation = -26209.276771 eV Core-core repulsion = 22679.683593 eV Total energy + Delta-G solvation = -3529.593178 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.88867 -39.61046 -37.89831 -35.69559 -33.53790 -32.57180 -32.01790 -29.65595 -28.82981 -27.58313 -27.13741 -26.03691 -25.50607 -23.72068 -22.55713 -21.23542 -20.31345 -19.45000 -18.39692 -17.21589 -16.74423 -16.35484 -15.80883 -15.42160 -14.98184 -14.78051 -14.55183 -14.26577 -14.05034 -13.81890 -13.63640 -13.32996 -13.14551 -12.91023 -12.56354 -12.45780 -12.32742 -12.12588 -11.97399 -11.84675 -11.73247 -11.61405 -11.17587 -10.98767 -10.93637 -10.66079 -10.43368 -10.21006 -10.09703 -9.87449 -9.69062 -9.55390 -8.95895 -8.78086 -8.63160 -8.47650 -6.86805 -5.74288 -3.07938 0.85666 1.23423 2.73927 2.94183 3.37846 3.43713 3.45982 3.64526 4.36675 4.46618 4.56875 4.63709 4.67812 4.73607 4.95770 5.09228 5.11127 5.24477 5.33803 5.34660 5.44037 5.46994 5.50665 5.57401 5.60812 5.64237 5.70054 5.71415 5.75917 5.81449 5.89058 5.93824 6.09128 6.15963 6.19473 6.21190 6.38510 6.40175 6.45059 6.49749 6.64014 6.68369 6.78542 7.53019 7.58413 7.79302 7.82176 8.20979 8.22361 9.18580 9.78634 10.44102 11.37300 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.003343 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.334954 B = 8373.198436 C = 9497.366434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.065 4.065 3 C -0.131 4.131 4 C -0.078 4.078 5 C -0.131 4.131 6 C 0.587 3.413 7 O -0.541 6.541 8 N -0.638 5.638 9 C 0.118 3.882 10 C -0.106 4.106 11 C 0.120 3.880 12 C -0.117 4.117 13 C 0.180 3.820 14 N -0.605 5.605 15 C -0.228 4.228 16 H 0.079 0.921 17 C -0.008 4.008 18 N -0.921 5.921 19 Si 0.911 3.089 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.154 3.846 24 C -0.032 4.032 25 C -0.115 4.115 26 C -0.131 4.131 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.128 0.872 31 H 0.133 0.867 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.252 0.748 41 H 0.027 0.973 42 H 0.043 0.957 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.259 -15.941 2.663 19.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.065 4.065 3 C -0.149 4.149 4 C -0.096 4.096 5 C -0.134 4.134 6 C 0.378 3.622 7 O -0.420 6.420 8 N -0.372 5.372 9 C -0.004 4.004 10 C -0.107 4.107 11 C -0.003 4.003 12 C -0.155 4.155 13 C 0.055 3.945 14 N -0.331 5.331 15 C -0.356 4.356 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.027 3.973 24 C -0.033 4.033 25 C -0.171 4.171 26 C -0.149 4.149 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.146 0.854 31 H 0.150 0.850 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.045 0.955 42 H 0.061 0.939 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.083 -16.289 3.142 19.413 hybrid contribution -0.033 0.892 -0.672 1.117 sum -10.116 -15.397 2.470 18.587 Atomic orbital electron populations 1.20840 0.90959 1.02956 1.02564 1.20084 0.96227 0.93075 0.97129 1.21002 0.93854 0.97847 1.02236 1.21473 0.94460 0.97363 0.96343 1.19738 0.92548 0.94040 1.07043 1.17786 0.86523 0.78805 0.79128 1.90757 1.69964 1.38986 1.42252 1.49751 1.10128 1.31282 1.46020 1.23005 0.98480 0.84231 0.94694 1.22194 0.95570 0.93242 0.99724 1.22784 0.83318 0.93759 1.00423 1.22473 1.00822 0.96884 0.95357 1.21224 1.00344 0.89782 0.83147 1.44551 1.81274 1.01427 1.05879 1.19093 1.40168 0.86692 0.89627 0.90340 1.24792 1.01771 0.97224 0.96609 1.69967 1.52928 1.17852 1.16131 0.86060 0.77227 0.82018 0.80538 1.20508 1.21793 1.21787 1.21138 0.96290 0.85827 0.94055 1.19888 0.93447 0.94417 0.95506 1.20857 1.00199 0.93049 1.02993 1.20820 0.92973 0.97781 1.03335 0.90854 0.91439 0.91257 0.85385 0.84961 0.89506 0.89992 0.90322 0.89681 0.92168 0.91726 0.93515 0.93780 0.93806 0.95517 0.93926 0.90427 0.91847 0.90842 0.85597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.00 36.00 0.36 -0.47 16 2 C -0.06 -0.66 5.89 -104.54 -0.62 -1.27 16 3 C -0.13 -1.46 9.68 -39.64 -0.38 -1.85 16 4 C -0.08 -1.01 8.90 -39.19 -0.35 -1.36 16 5 C -0.13 -1.86 5.71 -104.97 -0.60 -2.46 16 6 C 0.59 9.48 6.98 -12.33 -0.09 9.40 16 7 O -0.54 -10.07 15.76 5.32 0.08 -9.98 16 8 N -0.64 -9.62 3.68 -186.84 -0.69 -10.31 16 9 C 0.12 1.73 7.10 -7.33 -0.05 1.68 16 10 C -0.11 -1.70 1.06 -155.22 -0.16 -1.87 16 11 C 0.12 1.71 8.03 -7.48 -0.06 1.65 16 12 C -0.12 -2.10 6.40 -25.61 -0.16 -2.26 16 13 C 0.18 4.15 5.39 -2.83 -0.02 4.13 16 14 N -0.60 -14.56 3.41 -170.53 -0.58 -15.14 16 15 C -0.23 -6.08 10.28 -15.06 -0.15 -6.23 16 16 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 17 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 18 N -0.92 -26.28 10.30 55.49 0.57 -25.70 16 19 Si 0.91 21.53 29.55 -169.99 -5.02 16.50 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.15 2.90 6.70 -3.22 -0.02 2.88 16 24 C -0.03 -0.40 5.91 -104.23 -0.62 -1.02 16 25 C -0.11 -1.32 9.00 36.00 0.32 -0.99 16 26 C -0.13 -1.38 9.35 -39.64 -0.37 -1.76 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 29 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 31 H 0.13 1.71 5.82 -52.48 -0.31 1.41 16 32 H 0.09 1.18 8.06 -51.93 -0.42 0.77 16 33 H 0.08 1.21 5.86 -51.93 -0.30 0.91 16 34 H 0.08 1.13 8.13 -51.93 -0.42 0.71 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 1.19 7.38 -51.93 -0.38 0.81 16 39 H 0.04 1.14 7.49 -51.93 -0.39 0.76 16 40 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.04 0.77 8.00 -51.93 -0.42 0.35 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 45 H 0.07 0.98 6.29 -51.93 -0.33 0.65 16 46 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 368.25 15.07 5.55 5.55 Total: -1.00 -31.30 368.25 -10.30 -41.60 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -7.15 Total: -0.41 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -3.06 Total: -2.10 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -0.70 Total: -51.16 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.30 -10.30 -41.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073400044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.562 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds