Wall clock time and date at job start Tue Mar 31 2020 10:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38382 * 119.85305 * 2 1 4 4 C 1.37942 * 120.14634 * 179.97438 * 3 2 1 5 5 C 1.39589 * 119.84961 * 0.02670 * 4 3 2 6 6 C 1.47846 * 120.14278 * 180.02562 * 5 4 3 7 7 O 1.21554 * 120.00483 * 139.74452 * 6 5 4 8 8 N 1.34777 * 120.00147 * 319.75275 * 6 5 4 9 9 C 1.47395 * 135.84935 * 4.58889 * 8 6 5 10 10 C 1.52073 * 87.41039 * 154.39324 * 9 8 6 11 11 C 1.47387 * 135.85737 * 184.96211 * 8 6 5 12 12 C 1.53513 * 117.20900 * 267.27943 * 10 9 8 13 13 C 1.54631 * 102.70371 * 262.92958 * 12 10 9 14 14 N 1.47151 * 107.37561 * 339.38341 * 13 12 10 15 15 C 1.36939 * 125.58021 * 179.04012 * 14 13 12 16 16 H 1.07992 * 119.99682 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99513 * 0.02757 * 15 14 13 18 18 N 1.31612 * 120.00454 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99277 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47419 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46834 * 120.00282 * 19 17 15 22 22 H 1.48502 * 109.47052 * 239.99848 * 19 17 15 23 23 C 1.47757 * 108.83700 * 359.09260 * 14 13 12 24 24 C 1.39559 * 119.71527 * 0.27325 * 5 4 3 25 25 C 1.50696 * 120.07343 * 179.72386 * 24 5 4 26 26 C 1.37976 * 119.84786 * 359.42397 * 24 5 4 27 27 H 1.08998 * 109.47551 * 89.99406 * 1 2 3 28 28 H 1.09004 * 109.47155 * 210.00233 * 1 2 3 29 29 H 1.09004 * 109.47014 * 329.99279 * 1 2 3 30 30 H 1.08006 * 119.93157 * 359.97438 * 3 2 1 31 31 H 1.08003 * 120.07114 * 180.02562 * 4 3 2 32 32 H 1.09000 * 113.54020 * 269.00236 * 9 8 6 33 33 H 1.08998 * 113.54614 * 39.67733 * 9 8 6 34 34 H 1.08995 * 113.54664 * 320.32224 * 11 8 6 35 35 H 1.09000 * 113.54354 * 90.92853 * 11 8 6 36 36 H 1.09000 * 110.76617 * 21.23069 * 12 10 9 37 37 H 1.09004 * 110.76707 * 144.62397 * 12 10 9 38 38 H 1.08994 * 109.86674 * 98.83293 * 13 12 10 39 39 H 1.09002 * 109.86389 * 219.93734 * 13 12 10 40 40 H 0.97007 * 120.00096 * 179.97438 * 18 17 15 41 41 H 1.09005 * 110.40045 * 263.49608 * 23 14 13 42 42 H 1.09005 * 110.40546 * 141.07909 * 23 14 13 43 43 H 1.08999 * 109.47130 * 93.07399 * 25 24 5 44 44 H 1.09000 * 109.47050 * 213.07099 * 25 24 5 45 45 H 1.09004 * 109.47312 * 333.07760 * 25 24 5 46 46 H 1.08002 * 119.92381 * 180.32341 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5752 1.2073 0.0005 5 6 4.2761 0.0001 0.0005 6 6 5.7546 0.0001 0.0017 7 8 6.3619 -0.8035 0.6820 8 7 6.4291 0.8913 -0.7515 9 6 6.0723 2.0344 -1.6109 10 6 7.4599 2.5898 -1.3304 11 6 7.8438 1.1430 -1.0795 12 6 7.6014 3.5629 -0.1515 13 6 7.5391 4.9451 -0.8421 14 7 7.8768 4.7435 -2.2601 15 6 7.9146 5.7222 -3.2170 16 1 8.1745 5.4723 -4.2350 17 6 7.6190 7.0356 -2.8785 18 7 7.3018 7.3401 -1.6380 19 14 7.6713 8.3708 -4.1838 20 1 8.0515 7.7727 -5.4888 21 1 6.3321 9.0018 -4.3004 22 1 8.6713 9.3994 -3.8000 23 6 8.1670 3.3118 -2.4825 24 6 3.5754 -1.2068 -0.0058 25 6 4.3240 -2.5146 -0.0122 26 6 2.1956 -1.1997 0.0000 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5140 30 1 1.6522 2.1335 -0.0004 31 1 4.1116 2.1447 0.0010 32 1 5.9151 1.7621 -2.6546 33 1 5.2664 2.6476 -1.2076 34 1 8.5171 1.0117 -0.2325 35 1 8.1831 0.6201 -1.9737 36 1 6.7752 3.4436 0.5494 37 1 8.5588 3.4247 0.3509 38 1 6.5339 5.3573 -0.7557 39 1 8.2596 5.6216 -0.3823 40 1 7.0956 8.2579 -1.4014 41 1 9.2412 3.1312 -2.4420 42 1 7.7619 2.9863 -3.4407 43 1 4.4563 -2.8625 1.0123 44 1 3.7572 -3.2549 -0.5769 45 1 5.2999 -2.3725 -0.4765 46 1 1.6521 -2.1330 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073400044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:30 Heat of formation + Delta-G solvation = 36.104112 kcal Electronic energy + Delta-G solvation = -26210.007580 eV Core-core repulsion = 22679.683593 eV Total energy + Delta-G solvation = -3530.323988 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.11679 -40.66135 -39.10521 -37.33362 -34.38615 -34.14759 -33.22343 -31.25332 -30.34377 -28.48433 -28.14507 -27.28235 -26.97434 -25.38735 -23.46597 -22.22763 -22.09030 -20.57852 -19.77964 -18.60389 -18.30741 -17.51525 -17.00154 -16.73617 -16.38925 -16.15274 -15.77448 -15.58880 -15.18536 -15.10486 -14.63383 -14.19342 -14.16154 -14.06941 -13.96475 -13.73082 -13.68029 -13.38243 -13.23006 -12.88776 -12.85979 -12.80067 -12.59930 -12.48133 -12.28071 -11.98475 -11.95334 -11.89000 -11.81971 -11.66451 -11.23085 -10.84150 -10.67427 -9.89385 -9.78575 -9.52474 -8.84920 -7.80776 -5.15530 -0.07776 0.35533 1.49702 1.50143 1.59131 1.60231 1.80083 2.52771 2.71480 3.19586 3.34967 3.45182 3.56732 3.74672 3.80855 3.85390 3.92769 4.04144 4.19960 4.30055 4.33613 4.39624 4.49067 4.56053 4.60472 4.62313 4.66967 4.73790 4.79081 4.79887 4.84213 4.86762 4.92241 4.98475 5.02462 5.15162 5.18036 5.20137 5.27116 5.31571 5.50664 5.51428 5.57802 5.67644 5.80064 5.95043 6.22760 6.60695 7.01001 7.14208 7.81416 8.45789 9.29830 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.003343 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.334954 B = 8373.198436 C = 9497.366434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.060 4.060 3 C -0.139 4.139 4 C -0.088 4.088 5 C -0.157 4.157 6 C 0.585 3.415 7 O -0.573 6.573 8 N -0.638 5.638 9 C 0.124 3.876 10 C -0.099 4.099 11 C 0.126 3.874 12 C -0.103 4.103 13 C 0.191 3.809 14 N -0.625 5.625 15 C -0.234 4.234 16 H 0.087 0.913 17 C -0.067 4.067 18 N -0.952 5.952 19 Si 0.975 3.025 20 H -0.264 1.264 21 H -0.294 1.294 22 H -0.297 1.297 23 C 0.153 3.847 24 C -0.044 4.044 25 C -0.110 4.110 26 C -0.130 4.130 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.144 0.856 31 H 0.124 0.876 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.014 0.986 39 H 0.005 0.995 40 H 0.245 0.755 41 H 0.036 0.964 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.050 0.950 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.827 -17.780 1.536 21.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.060 4.060 3 C -0.156 4.156 4 C -0.107 4.107 5 C -0.160 4.160 6 C 0.377 3.623 7 O -0.455 6.455 8 N -0.371 5.371 9 C 0.002 3.998 10 C -0.101 4.101 11 C 0.004 3.996 12 C -0.141 4.141 13 C 0.066 3.934 14 N -0.351 5.351 15 C -0.363 4.363 16 H 0.105 0.895 17 C -0.260 4.260 18 N -0.602 5.602 19 Si 0.804 3.196 20 H -0.188 1.188 21 H -0.221 1.221 22 H -0.224 1.224 23 C 0.027 3.973 24 C -0.045 4.045 25 C -0.166 4.166 26 C -0.147 4.147 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.162 0.838 31 H 0.142 0.858 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.129 0.871 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.032 0.968 39 H 0.023 0.977 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.109 0.891 45 H 0.069 0.931 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.641 -18.155 1.987 21.658 hybrid contribution 0.424 1.437 -0.320 1.532 sum -11.217 -16.718 1.666 20.201 Atomic orbital electron populations 1.20916 0.88471 1.04168 1.03623 1.20488 0.98004 0.92438 0.95084 1.21264 0.93222 0.99241 1.01910 1.21467 0.95378 0.96650 0.97188 1.19740 0.91465 0.95255 1.09551 1.18136 0.87420 0.78271 0.78481 1.90726 1.70813 1.40331 1.43582 1.49740 1.10471 1.31119 1.45797 1.23011 0.97388 0.83869 0.95534 1.22003 0.96762 0.93734 0.97558 1.22827 0.83143 0.92052 1.01578 1.22266 1.01683 0.94316 0.95828 1.20903 0.97152 0.91873 0.83467 1.44829 1.81157 1.03401 1.05758 1.19501 1.38786 0.87498 0.90522 0.89548 1.25595 1.02444 0.99465 0.98459 1.70187 1.54441 1.17604 1.17935 0.85058 0.76571 0.79125 0.78883 1.18802 1.22128 1.22435 1.21297 0.97059 0.83206 0.95719 1.20137 0.94534 0.94148 0.95672 1.20820 0.99393 0.93424 1.02991 1.21151 0.92173 0.99234 1.02163 0.89682 0.89881 0.90497 0.83814 0.85814 0.87831 0.90313 0.90247 0.87123 0.91416 0.90799 0.96812 0.97717 0.94612 0.94630 0.92455 0.90752 0.89129 0.93091 0.82770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 10.00 71.23 0.71 -0.52 16 2 C -0.06 -1.06 5.89 -19.81 -0.12 -1.17 16 3 C -0.14 -2.87 9.68 22.23 0.22 -2.65 16 4 C -0.09 -2.25 8.90 22.53 0.20 -2.05 16 5 C -0.16 -4.40 5.71 -20.09 -0.11 -4.52 16 6 C 0.58 18.78 6.98 86.79 0.61 19.38 16 7 O -0.57 -21.47 15.76 -3.89 -0.06 -21.53 16 8 N -0.64 -18.64 3.68 -863.32 -3.18 -21.83 16 9 C 0.12 3.50 7.10 83.76 0.59 4.09 16 10 C -0.10 -3.07 1.06 -52.62 -0.06 -3.13 16 11 C 0.13 3.38 8.03 83.67 0.67 4.05 16 12 C -0.10 -3.69 6.40 31.32 0.20 -3.49 16 13 C 0.19 9.14 5.39 86.81 0.47 9.61 16 14 N -0.62 -30.31 3.41 -693.45 -2.36 -32.67 16 15 C -0.23 -12.53 10.28 84.03 0.86 -11.67 16 16 H 0.09 4.38 7.83 -2.91 -0.02 4.36 16 17 C -0.07 -3.71 5.49 84.86 0.47 -3.24 16 18 N -0.95 -56.29 10.30 21.65 0.22 -56.06 16 19 Si 0.97 44.74 29.55 68.60 2.03 46.77 16 20 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 23 C 0.15 5.55 6.70 86.22 0.58 6.13 16 24 C -0.04 -1.05 5.91 -19.61 -0.12 -1.17 16 25 C -0.11 -2.41 9.00 71.23 0.64 -1.77 16 26 C -0.13 -2.39 9.35 22.23 0.21 -2.18 16 27 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.08 0.66 8.08 -2.38 -0.02 0.65 16 29 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 30 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 31 H 0.12 3.25 5.82 -2.91 -0.02 3.23 16 32 H 0.10 2.61 8.06 -2.39 -0.02 2.59 16 33 H 0.08 2.30 5.86 -2.39 -0.01 2.29 16 34 H 0.08 2.15 8.13 -2.39 -0.02 2.13 16 35 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 37 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.01 0.73 7.38 -2.39 -0.02 0.72 16 39 H 0.00 0.25 7.49 -2.39 -0.02 0.23 16 40 H 0.24 14.14 8.31 -92.70 -0.77 13.37 16 41 H 0.04 1.26 8.14 -2.38 -0.02 1.25 16 42 H 0.06 1.93 8.00 -2.38 -0.02 1.91 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.09 1.42 8.11 -2.39 -0.02 1.40 16 45 H 0.05 1.34 6.29 -2.39 -0.02 1.33 16 46 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -69.69 368.25 3.63 -66.06 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.97 Total: 13.56 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 6.02 Total: 5.70 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -5.32 Total: -110.56 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.06 Total: -21.53 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -69.69 3.63 -66.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073400044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.164 kcal (2) G-P(sol) polarization free energy of solvation -69.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds