Wall clock time and date at job start Tue Mar 31 2020 10:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38385 * 119.85173 * 2 1 4 4 C 1.37939 * 120.14264 * 180.28110 * 3 2 1 5 5 C 1.39595 * 119.85460 * 359.73634 * 4 3 2 6 6 C 1.47839 * 120.14242 * 179.97438 * 5 4 3 7 7 O 1.21563 * 119.99638 * 186.66435 * 6 5 4 8 8 N 1.34767 * 120.00254 * 6.66789 * 6 5 4 9 9 C 1.47392 * 135.85451 * 5.14723 * 8 6 5 10 10 C 1.52077 * 87.41319 * 154.38907 * 9 8 6 11 11 C 1.47398 * 135.85445 * 185.52009 * 8 6 5 12 12 C 1.53506 * 117.21475 * 267.28530 * 10 9 8 13 13 C 1.54638 * 102.69900 * 262.92677 * 12 10 9 14 14 N 1.47143 * 107.37564 * 339.38510 * 13 12 10 15 15 C 1.36944 * 125.57719 * 179.06706 * 14 13 12 16 16 H 1.07992 * 120.00093 * 186.05871 * 15 14 13 17 17 C 1.38820 * 119.99917 * 6.05503 * 15 14 13 18 18 N 1.31619 * 119.99711 * 353.13459 * 17 15 14 19 19 Si 1.86793 * 119.99685 * 173.13534 * 17 15 14 20 20 H 1.48494 * 109.47455 * 94.98426 * 19 17 15 21 21 H 1.48499 * 109.47138 * 214.98643 * 19 17 15 22 22 H 1.48497 * 109.47182 * 334.98353 * 19 17 15 23 23 C 1.47752 * 108.84400 * 359.08588 * 14 13 12 24 24 C 1.39563 * 119.70955 * 0.02562 * 5 4 3 25 25 C 1.37973 * 119.85212 * 359.97438 * 24 5 4 26 26 C 1.50705 * 119.92509 * 179.97438 * 25 24 5 27 27 H 1.09000 * 109.47144 * 270.23308 * 1 2 3 28 28 H 1.09000 * 109.47503 * 30.23375 * 1 2 3 29 29 H 1.09005 * 109.47062 * 150.23800 * 1 2 3 30 30 H 1.08001 * 119.92997 * 0.02562 * 3 2 1 31 31 H 1.08003 * 120.07059 * 179.76722 * 4 3 2 32 32 H 1.08993 * 113.54588 * 268.99810 * 9 8 6 33 33 H 1.09004 * 113.54214 * 39.68383 * 9 8 6 34 34 H 1.09003 * 113.54031 * 320.32199 * 11 8 6 35 35 H 1.09002 * 113.54244 * 90.92645 * 11 8 6 36 36 H 1.09003 * 110.76722 * 21.22862 * 12 10 9 37 37 H 1.09004 * 110.76928 * 144.62812 * 12 10 9 38 38 H 1.09000 * 109.86440 * 98.83630 * 13 12 10 39 39 H 1.08996 * 109.86372 * 219.92947 * 13 12 10 40 40 H 0.97005 * 119.99160 * 179.97438 * 18 17 15 41 41 H 1.08995 * 110.40395 * 263.50788 * 23 14 13 42 42 H 1.08999 * 110.40495 * 141.07953 * 23 14 13 43 43 H 1.07995 * 120.07122 * 180.02562 * 24 5 4 44 44 H 1.09000 * 109.47057 * 90.00405 * 26 25 24 45 45 H 1.09001 * 109.46548 * 210.00038 * 26 25 24 46 46 H 1.08989 * 109.47033 * 329.99817 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5752 1.2072 -0.0059 5 6 4.2762 0.0001 -0.0062 6 6 5.7546 0.0002 -0.0130 7 8 6.3619 -1.0458 -0.1355 8 7 6.4290 1.1597 0.1166 9 6 6.0736 2.5671 0.3721 10 6 7.4689 2.7426 0.9509 11 6 7.8426 1.5734 0.0580 12 6 7.6312 2.5433 2.4643 13 6 7.5741 3.9907 3.0058 14 7 7.8951 4.8913 1.8874 15 6 7.9322 6.2587 1.9510 16 1 8.0827 6.8372 1.0516 17 6 7.7762 6.9013 3.1716 18 7 7.4587 6.2080 4.2444 19 14 8.0170 8.7498 3.2913 20 1 6.7025 9.4293 3.1669 21 1 8.6256 9.0857 4.6035 22 1 8.9143 9.2039 2.1987 23 6 8.1705 4.0789 0.6844 24 6 3.5754 -1.2068 -0.0012 25 6 2.1957 -1.1997 0.0046 26 6 1.4372 -2.5020 0.0095 27 1 -0.3633 0.0042 1.0277 28 1 -0.3634 0.8879 -0.5174 29 1 -0.3633 -0.8922 -0.5102 30 1 1.6523 2.1335 0.0004 31 1 4.1116 2.1447 -0.0096 32 1 5.9033 3.1450 -0.5362 33 1 5.2774 2.6887 1.1066 34 1 8.5234 0.8651 0.5302 35 1 8.1680 1.8718 -0.9386 36 1 6.8113 1.9478 2.8659 37 1 8.5926 2.0830 2.6927 38 1 6.5734 4.2069 3.3800 39 1 8.3052 4.1165 3.8044 40 1 7.3501 6.6570 5.0973 41 1 9.2433 3.9277 0.5653 42 1 7.7526 4.5575 -0.2013 43 1 4.1118 -2.1441 -0.0010 44 1 1.2587 -2.8146 1.0383 45 1 0.4832 -2.3686 -0.5005 46 1 2.0212 -3.2644 -0.5058 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073402936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:35 Heat of formation + Delta-G solvation = 58.153544 kcal Electronic energy + Delta-G solvation = -25995.403184 eV Core-core repulsion = 22466.035332 eV Total energy + Delta-G solvation = -3529.367853 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.90959 -39.62673 -37.98576 -35.70342 -33.69400 -32.30276 -32.18207 -29.70372 -28.83397 -27.91340 -27.06308 -26.03628 -25.43467 -23.77385 -22.21089 -21.74698 -20.31778 -19.29320 -18.52344 -16.94202 -16.82011 -16.44157 -15.67935 -15.38653 -15.22405 -14.88579 -14.52052 -14.50650 -14.05664 -13.84348 -13.61665 -13.27799 -13.04934 -12.92510 -12.82685 -12.46109 -12.31715 -12.17053 -11.98087 -11.85466 -11.81829 -11.49096 -11.17139 -10.97211 -10.95321 -10.64104 -10.44975 -10.22547 -10.12763 -9.87068 -9.68894 -9.57455 -8.97637 -8.78519 -8.60180 -8.51406 -6.86205 -5.75395 -3.08027 0.76248 1.22941 2.82129 2.89675 3.37882 3.44095 3.45863 3.75762 4.34723 4.46124 4.54204 4.57880 4.67849 4.81115 4.90549 4.93855 5.10495 5.17975 5.24782 5.29356 5.41202 5.44544 5.50229 5.53040 5.56702 5.59623 5.61872 5.65369 5.76280 5.79244 5.83772 5.88033 5.99722 6.14289 6.21746 6.21893 6.29531 6.41490 6.44127 6.50977 6.64054 6.68775 6.78509 7.52119 7.60274 7.79273 7.81532 8.21435 8.23017 9.18216 9.78615 10.44656 11.36526 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017916 B = 0.003121 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.448197 B = 8970.342804 C = 9990.107083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.065 4.065 3 C -0.125 4.125 4 C -0.095 4.095 5 C -0.129 4.129 6 C 0.585 3.415 7 O -0.548 6.548 8 N -0.638 5.638 9 C 0.113 3.887 10 C -0.105 4.105 11 C 0.120 3.880 12 C -0.117 4.117 13 C 0.179 3.821 14 N -0.604 5.604 15 C -0.230 4.230 16 H 0.078 0.922 17 C -0.006 4.006 18 N -0.919 5.919 19 Si 0.909 3.091 20 H -0.290 1.290 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.154 3.846 24 C -0.059 4.059 25 C -0.101 4.101 26 C -0.115 4.115 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.129 0.871 31 H 0.140 0.860 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.047 0.953 40 H 0.252 0.748 41 H 0.028 0.972 42 H 0.042 0.958 43 H 0.133 0.867 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.690 -13.062 -9.069 19.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.066 4.066 3 C -0.143 4.143 4 C -0.113 4.113 5 C -0.132 4.132 6 C 0.376 3.624 7 O -0.427 6.427 8 N -0.371 5.371 9 C -0.009 4.009 10 C -0.107 4.107 11 C -0.003 4.003 12 C -0.155 4.155 13 C 0.054 3.946 14 N -0.331 5.331 15 C -0.358 4.358 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.566 5.566 19 Si 0.740 3.260 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.206 1.206 23 C 0.027 3.973 24 C -0.078 4.078 25 C -0.101 4.101 26 C -0.172 4.172 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.146 0.854 31 H 0.157 0.843 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.060 0.940 43 H 0.151 0.849 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.498 -13.653 -8.981 19.982 hybrid contribution 0.132 1.122 0.147 1.139 sum -11.366 -12.530 -8.834 19.085 Atomic orbital electron populations 1.20923 0.91074 1.03028 1.02659 1.19981 0.96182 0.92650 0.97764 1.21019 0.93934 0.97736 1.01605 1.21875 0.94662 0.98129 0.96608 1.19858 0.92533 0.94387 1.06437 1.17796 0.86621 0.81892 0.76076 1.90745 1.70018 1.30532 1.51418 1.49652 1.10352 1.06883 1.70252 1.23051 0.98681 0.79267 0.99926 1.22207 0.95360 0.96146 0.96945 1.22793 0.83283 0.94404 0.99773 1.22467 1.00841 1.00504 0.91713 1.21234 1.00277 0.83067 0.89987 1.44537 1.81668 1.01783 1.05124 1.19032 1.43092 0.80098 0.93563 0.90400 1.24819 1.01795 0.98063 0.95599 1.69978 1.53287 1.33939 0.99410 0.86144 0.77736 0.85050 0.77099 1.21711 1.21665 1.20633 1.21136 0.96408 0.88202 0.91560 1.21104 0.93083 0.97656 0.95926 1.19693 0.93293 0.95184 1.01900 1.20850 0.99953 0.93864 1.02519 0.90772 0.91340 0.90992 0.85351 0.84296 0.89268 0.89586 0.90289 0.89615 0.92096 0.91704 0.93872 0.93488 0.93742 0.95445 0.93963 0.84866 0.91032 0.91075 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.59 36.01 0.35 -0.51 16 2 C -0.07 -0.66 5.89 -104.53 -0.62 -1.28 16 3 C -0.12 -1.36 9.68 -39.64 -0.38 -1.75 16 4 C -0.09 -1.19 9.15 -39.18 -0.36 -1.55 16 5 C -0.13 -1.85 5.87 -104.97 -0.62 -2.46 16 6 C 0.58 9.66 8.01 -12.34 -0.10 9.57 16 7 O -0.55 -10.59 17.14 5.31 0.09 -10.49 16 8 N -0.64 -9.70 3.68 -186.81 -0.69 -10.38 16 9 C 0.11 1.63 5.43 -7.33 -0.04 1.59 16 10 C -0.10 -1.69 1.06 -155.22 -0.16 -1.86 16 11 C 0.12 1.73 8.03 -7.47 -0.06 1.67 16 12 C -0.12 -2.12 6.40 -25.61 -0.16 -2.29 16 13 C 0.18 4.16 5.40 -2.83 -0.02 4.14 16 14 N -0.60 -14.55 3.41 -170.54 -0.58 -15.13 16 15 C -0.23 -6.12 10.26 -15.05 -0.15 -6.28 16 16 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 17 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 18 N -0.92 -26.29 10.35 55.49 0.57 -25.72 16 19 Si 0.91 21.51 29.56 -169.99 -5.02 16.49 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.15 2.89 6.70 -3.22 -0.02 2.87 16 24 C -0.06 -0.76 9.24 -39.18 -0.36 -1.12 16 25 C -0.10 -1.08 5.87 -104.68 -0.61 -1.69 16 26 C -0.12 -0.88 9.60 36.01 0.35 -0.54 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 29 H 0.07 0.42 5.92 -51.93 -0.31 0.12 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.14 1.68 4.17 -52.48 -0.22 1.46 16 32 H 0.09 1.14 8.04 -51.93 -0.42 0.72 16 33 H 0.09 1.26 6.83 -51.93 -0.35 0.91 16 34 H 0.08 1.15 8.13 -51.93 -0.42 0.73 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.04 1.11 7.55 -51.93 -0.39 0.72 16 39 H 0.05 1.23 7.36 -51.93 -0.38 0.85 16 40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.04 0.75 8.00 -51.93 -0.42 0.33 16 43 H 0.13 1.71 7.67 -52.49 -0.40 1.31 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.44 5.92 -51.93 -0.31 0.13 16 46 H 0.07 0.48 8.08 -51.94 -0.42 0.06 16 LS Contribution 365.88 15.07 5.51 5.51 Total: -1.00 -31.85 365.88 -10.15 -42.00 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -6.96 Total: -0.51 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -3.07 Total: -1.77 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.69 Total: -51.23 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.85 -10.15 -42.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073402936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.154 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds