Wall clock time and date at job start Tue Mar 31 2020 10:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38385 * 119.85173 * 2 1 4 4 C 1.37939 * 120.14264 * 180.28110 * 3 2 1 5 5 C 1.39595 * 119.85460 * 359.73634 * 4 3 2 6 6 C 1.47839 * 120.14242 * 179.97438 * 5 4 3 7 7 O 1.21563 * 119.99638 * 186.66435 * 6 5 4 8 8 N 1.34767 * 120.00254 * 6.66789 * 6 5 4 9 9 C 1.47392 * 135.85451 * 5.14723 * 8 6 5 10 10 C 1.52077 * 87.41319 * 154.38907 * 9 8 6 11 11 C 1.47398 * 135.85445 * 185.52009 * 8 6 5 12 12 C 1.53506 * 117.21475 * 267.28530 * 10 9 8 13 13 C 1.54638 * 102.69900 * 262.92677 * 12 10 9 14 14 N 1.47143 * 107.37564 * 339.38510 * 13 12 10 15 15 C 1.36944 * 125.57719 * 179.06706 * 14 13 12 16 16 H 1.07992 * 120.00093 * 186.05871 * 15 14 13 17 17 C 1.38820 * 119.99917 * 6.05503 * 15 14 13 18 18 N 1.31619 * 119.99711 * 353.13459 * 17 15 14 19 19 Si 1.86793 * 119.99685 * 173.13534 * 17 15 14 20 20 H 1.48494 * 109.47455 * 94.98426 * 19 17 15 21 21 H 1.48499 * 109.47138 * 214.98643 * 19 17 15 22 22 H 1.48497 * 109.47182 * 334.98353 * 19 17 15 23 23 C 1.47752 * 108.84400 * 359.08588 * 14 13 12 24 24 C 1.39563 * 119.70955 * 0.02562 * 5 4 3 25 25 C 1.37973 * 119.85212 * 359.97438 * 24 5 4 26 26 C 1.50705 * 119.92509 * 179.97438 * 25 24 5 27 27 H 1.09000 * 109.47144 * 270.23308 * 1 2 3 28 28 H 1.09000 * 109.47503 * 30.23375 * 1 2 3 29 29 H 1.09005 * 109.47062 * 150.23800 * 1 2 3 30 30 H 1.08001 * 119.92997 * 0.02562 * 3 2 1 31 31 H 1.08003 * 120.07059 * 179.76722 * 4 3 2 32 32 H 1.08993 * 113.54588 * 268.99810 * 9 8 6 33 33 H 1.09004 * 113.54214 * 39.68383 * 9 8 6 34 34 H 1.09003 * 113.54031 * 320.32199 * 11 8 6 35 35 H 1.09002 * 113.54244 * 90.92645 * 11 8 6 36 36 H 1.09003 * 110.76722 * 21.22862 * 12 10 9 37 37 H 1.09004 * 110.76928 * 144.62812 * 12 10 9 38 38 H 1.09000 * 109.86440 * 98.83630 * 13 12 10 39 39 H 1.08996 * 109.86372 * 219.92947 * 13 12 10 40 40 H 0.97005 * 119.99160 * 179.97438 * 18 17 15 41 41 H 1.08995 * 110.40395 * 263.50788 * 23 14 13 42 42 H 1.08999 * 110.40495 * 141.07953 * 23 14 13 43 43 H 1.07995 * 120.07122 * 180.02562 * 24 5 4 44 44 H 1.09000 * 109.47057 * 90.00405 * 26 25 24 45 45 H 1.09001 * 109.46548 * 210.00038 * 26 25 24 46 46 H 1.08989 * 109.47033 * 329.99817 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5752 1.2072 -0.0059 5 6 4.2762 0.0001 -0.0062 6 6 5.7546 0.0002 -0.0130 7 8 6.3619 -1.0458 -0.1355 8 7 6.4290 1.1597 0.1166 9 6 6.0736 2.5671 0.3721 10 6 7.4689 2.7426 0.9509 11 6 7.8426 1.5734 0.0580 12 6 7.6312 2.5433 2.4643 13 6 7.5741 3.9907 3.0058 14 7 7.8951 4.8913 1.8874 15 6 7.9322 6.2587 1.9510 16 1 8.0827 6.8372 1.0516 17 6 7.7762 6.9013 3.1716 18 7 7.4587 6.2080 4.2444 19 14 8.0170 8.7498 3.2913 20 1 6.7025 9.4293 3.1669 21 1 8.6256 9.0857 4.6035 22 1 8.9143 9.2039 2.1987 23 6 8.1705 4.0789 0.6844 24 6 3.5754 -1.2068 -0.0012 25 6 2.1957 -1.1997 0.0046 26 6 1.4372 -2.5020 0.0095 27 1 -0.3633 0.0042 1.0277 28 1 -0.3634 0.8879 -0.5174 29 1 -0.3633 -0.8922 -0.5102 30 1 1.6523 2.1335 0.0004 31 1 4.1116 2.1447 -0.0096 32 1 5.9033 3.1450 -0.5362 33 1 5.2774 2.6887 1.1066 34 1 8.5234 0.8651 0.5302 35 1 8.1680 1.8718 -0.9386 36 1 6.8113 1.9478 2.8659 37 1 8.5926 2.0830 2.6927 38 1 6.5734 4.2069 3.3800 39 1 8.3052 4.1165 3.8044 40 1 7.3501 6.6570 5.0973 41 1 9.2433 3.9277 0.5653 42 1 7.7526 4.5575 -0.2013 43 1 4.1118 -2.1441 -0.0010 44 1 1.2587 -2.8146 1.0383 45 1 0.4832 -2.3686 -0.5005 46 1 2.0212 -3.2644 -0.5058 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073402936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:34 Heat of formation + Delta-G solvation = 40.528372 kcal Electronic energy + Delta-G solvation = -25996.167469 eV Core-core repulsion = 22466.035332 eV Total energy + Delta-G solvation = -3530.132137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.14700 -40.62906 -39.24178 -37.34639 -34.62831 -33.98341 -33.09453 -31.30792 -30.37982 -28.73183 -28.10935 -27.38522 -26.69968 -25.42202 -23.11017 -22.71357 -22.12895 -20.44275 -19.89446 -18.64804 -18.02704 -17.63788 -16.83646 -16.74614 -16.39096 -16.17903 -16.01378 -15.57939 -15.29113 -15.04117 -14.85166 -14.35217 -14.09633 -13.98582 -13.73144 -13.67922 -13.59142 -13.45757 -13.33159 -12.89625 -12.82584 -12.75130 -12.67817 -12.31999 -12.22616 -12.03096 -11.95621 -11.87330 -11.83143 -11.65570 -11.21256 -10.89643 -10.63982 -9.95396 -9.76232 -9.54114 -8.83919 -7.81655 -5.15221 -0.19431 0.35008 1.49673 1.51243 1.60129 1.69074 1.75209 2.53133 2.78513 3.18631 3.33719 3.42570 3.56074 3.73617 3.83503 3.89802 3.98866 4.04295 4.19641 4.22616 4.27379 4.31840 4.45997 4.51633 4.62644 4.64978 4.70605 4.73320 4.80307 4.80978 4.84287 4.91473 4.93755 4.97826 5.02576 5.15229 5.16831 5.20152 5.29547 5.36200 5.39412 5.52144 5.62114 5.67734 5.79530 5.95773 6.22971 6.58780 6.99588 7.14023 7.81706 8.46686 9.29412 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017916 B = 0.003121 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.448197 B = 8970.342804 C = 9990.107083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.063 4.063 3 C -0.130 4.130 4 C -0.102 4.102 5 C -0.154 4.154 6 C 0.580 3.420 7 O -0.586 6.586 8 N -0.638 5.638 9 C 0.120 3.880 10 C -0.099 4.099 11 C 0.126 3.874 12 C -0.103 4.103 13 C 0.191 3.809 14 N -0.624 5.624 15 C -0.235 4.235 16 H 0.088 0.912 17 C -0.067 4.067 18 N -0.951 5.951 19 Si 0.973 3.027 20 H -0.288 1.288 21 H -0.300 1.300 22 H -0.267 1.267 23 C 0.153 3.847 24 C -0.074 4.074 25 C -0.103 4.103 26 C -0.115 4.115 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.150 0.850 31 H 0.141 0.859 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.009 0.991 39 H 0.007 0.993 40 H 0.245 0.755 41 H 0.036 0.964 42 H 0.060 0.940 43 H 0.124 0.876 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.347 -13.070 -10.966 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.063 4.063 3 C -0.148 4.148 4 C -0.120 4.120 5 C -0.157 4.157 6 C 0.373 3.627 7 O -0.469 6.469 8 N -0.371 5.371 9 C -0.002 4.002 10 C -0.101 4.101 11 C 0.004 3.996 12 C -0.141 4.141 13 C 0.066 3.934 14 N -0.351 5.351 15 C -0.364 4.364 16 H 0.106 0.894 17 C -0.260 4.260 18 N -0.600 5.600 19 Si 0.802 3.198 20 H -0.215 1.215 21 H -0.226 1.226 22 H -0.192 1.192 23 C 0.028 3.972 24 C -0.093 4.093 25 C -0.103 4.103 26 C -0.171 4.171 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.168 0.832 31 H 0.159 0.841 32 H 0.132 0.868 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.131 0.869 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.028 0.972 39 H 0.026 0.974 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.079 0.921 43 H 0.142 0.858 44 H 0.098 0.902 45 H 0.110 0.890 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.148 -13.653 -10.919 21.875 hybrid contribution 0.605 1.104 0.718 1.449 sum -12.542 -12.549 -10.201 20.466 Atomic orbital electron populations 1.21012 0.88496 1.04437 1.03639 1.20411 0.98048 0.92032 0.95797 1.21341 0.93385 0.99142 1.00920 1.21932 0.95557 0.97491 0.97014 1.19826 0.91343 0.95631 1.08923 1.18193 0.87607 0.81502 0.75366 1.90710 1.70950 1.31738 1.53475 1.49645 1.10745 1.06936 1.69729 1.23112 0.97322 0.78986 1.00761 1.22021 0.96825 0.95655 0.95584 1.22855 0.83054 0.93118 1.00623 1.22257 1.01544 0.97015 0.93330 1.20904 0.97025 0.86070 0.89447 1.44810 1.81565 1.01650 1.07056 1.19459 1.41443 0.81678 0.93794 0.89439 1.25624 1.02568 1.02191 0.95571 1.70198 1.54983 1.35278 0.99574 0.85133 0.77627 0.80275 0.76737 1.21474 1.22646 1.19198 1.21300 0.97168 0.88654 0.90121 1.21199 0.94279 0.96981 0.96873 1.20043 0.92547 0.96958 1.00754 1.20926 1.00476 0.92293 1.03402 0.89796 0.90163 0.89453 0.83220 0.84126 0.86786 0.89973 0.90428 0.86859 0.91635 0.90874 0.97234 0.97440 0.94612 0.94643 0.92135 0.85772 0.90161 0.89012 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.59 71.24 0.68 -0.59 16 2 C -0.06 -1.12 5.89 -19.81 -0.12 -1.24 16 3 C -0.13 -2.58 9.68 22.23 0.22 -2.36 16 4 C -0.10 -2.46 9.15 22.53 0.21 -2.26 16 5 C -0.15 -4.39 5.87 -20.09 -0.12 -4.51 16 6 C 0.58 19.17 8.01 86.79 0.69 19.87 16 7 O -0.59 -23.04 17.14 -3.91 -0.07 -23.10 16 8 N -0.64 -18.68 3.68 -863.23 -3.17 -21.86 16 9 C 0.12 3.25 5.43 83.77 0.45 3.71 16 10 C -0.10 -3.06 1.06 -52.62 -0.06 -3.11 16 11 C 0.13 3.37 8.03 83.67 0.67 4.04 16 12 C -0.10 -3.75 6.40 31.32 0.20 -3.55 16 13 C 0.19 9.15 5.40 86.81 0.47 9.62 16 14 N -0.62 -30.07 3.41 -693.46 -2.36 -32.44 16 15 C -0.23 -12.49 10.26 84.03 0.86 -11.62 16 16 H 0.09 4.38 7.84 -2.91 -0.02 4.36 16 17 C -0.07 -3.69 5.48 84.86 0.47 -3.22 16 18 N -0.95 -56.30 10.35 21.65 0.22 -56.07 16 19 Si 0.97 44.60 29.56 68.60 2.03 46.63 16 20 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 C 0.15 5.48 6.70 86.23 0.58 6.06 16 24 C -0.07 -1.92 9.24 22.53 0.21 -1.71 16 25 C -0.10 -2.04 5.87 -19.90 -0.12 -2.16 16 26 C -0.11 -1.50 9.60 71.24 0.68 -0.81 16 27 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 29 H 0.09 0.68 5.92 -2.38 -0.01 0.66 16 30 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 31 H 0.14 3.22 4.17 -2.91 -0.01 3.21 16 32 H 0.11 2.58 8.04 -2.39 -0.02 2.56 16 33 H 0.08 2.33 6.83 -2.39 -0.02 2.31 16 34 H 0.08 2.14 8.13 -2.39 -0.02 2.12 16 35 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.06 2.31 8.07 -2.39 -0.02 2.29 16 37 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 38 H 0.01 0.51 7.55 -2.39 -0.02 0.49 16 39 H 0.01 0.41 7.36 -2.39 -0.02 0.39 16 40 H 0.24 14.20 8.31 -92.70 -0.77 13.43 16 41 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.06 1.97 8.00 -2.39 -0.02 1.95 16 43 H 0.12 3.31 7.67 -2.91 -0.02 3.29 16 44 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 45 H 0.09 0.81 5.92 -2.39 -0.01 0.80 16 46 H 0.07 0.88 8.08 -2.39 -0.02 0.87 16 Total: -1.00 -71.19 365.88 3.61 -67.58 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.98 Total: 13.11 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 5.99 Total: 6.14 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -5.31 Total: -110.37 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.07 Total: -23.10 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -71.19 3.61 -67.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073402936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.113 kcal (2) G-P(sol) polarization free energy of solvation -71.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds