Wall clock time and date at job start Tue Mar 31 2020 10:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38365 * 119.92920 * 2 1 4 4 C 1.38355 * 120.29108 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.92295 * 180.02562 * 4 3 2 6 6 C 1.37960 * 120.14875 * 0.02562 * 4 3 2 7 7 C 1.39574 * 119.84966 * 359.97438 * 6 4 3 8 8 C 1.47854 * 120.14056 * 179.97438 * 7 6 4 9 9 O 1.21545 * 120.00070 * 5.05137 * 8 7 6 10 10 N 1.34779 * 119.99554 * 185.05258 * 8 7 6 11 11 C 1.47409 * 125.58380 * 174.25840 * 10 8 7 12 12 C 1.54862 * 104.81307 * 204.43497 * 11 10 8 13 13 C 1.55159 * 101.73623 * 322.76945 * 12 11 10 14 14 H 1.09003 * 113.25637 * 158.95219 * 13 12 11 15 15 C 1.53749 * 108.31448 * 285.38755 * 13 12 11 16 16 N 1.46593 * 108.11198 * 124.37198 * 15 13 12 17 17 C 1.36933 * 125.31402 * 181.28523 * 16 15 13 18 18 H 1.08007 * 119.99610 * 0.02562 * 17 16 15 19 19 C 1.38808 * 120.00031 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00263 * 0.02562 * 19 17 16 21 21 Si 1.86810 * 119.99805 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47019 * 270.00094 * 21 19 17 23 23 H 1.48498 * 109.47138 * 30.00157 * 21 19 17 24 24 H 1.48496 * 109.46899 * 150.00210 * 21 19 17 25 25 C 1.46711 * 109.37383 * 1.55591 * 16 15 13 26 26 C 1.46706 * 125.58824 * 354.29897 * 10 8 7 27 27 H 1.08997 * 111.53062 * 56.07130 * 26 10 8 28 28 C 1.37961 * 119.92980 * 180.25275 * 2 1 3 29 29 H 1.09004 * 109.47269 * 90.00383 * 1 2 3 30 30 H 1.09003 * 109.47459 * 209.99776 * 1 2 3 31 31 H 1.09003 * 109.47246 * 330.00302 * 1 2 3 32 32 H 1.07993 * 119.85029 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.47168 * 270.01660 * 5 4 3 34 34 H 1.08996 * 109.47614 * 30.02101 * 5 4 3 35 35 H 1.09003 * 109.46602 * 150.02175 * 5 4 3 36 36 H 1.07994 * 120.07059 * 180.02562 * 6 4 3 37 37 H 1.09003 * 110.36465 * 85.60113 * 11 10 8 38 38 H 1.08998 * 110.46105 * 323.32406 * 11 10 8 39 39 H 1.08999 * 110.97588 * 204.65417 * 12 11 10 40 40 H 1.09009 * 110.97369 * 80.88398 * 12 11 10 41 41 H 1.09005 * 109.74304 * 4.70670 * 15 13 12 42 42 H 1.08998 * 109.73844 * 244.03896 * 15 13 12 43 43 H 0.96993 * 119.99992 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.98886 * 101.13593 * 25 16 15 45 45 H 1.09004 * 109.98435 * 222.44244 * 25 16 15 46 46 H 1.08011 * 120.06974 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1991 0.0000 4 6 3.5808 1.2079 0.0005 5 6 4.3243 2.5187 0.0011 6 6 4.2812 0.0193 0.0005 7 6 3.5910 -1.1938 0.0005 8 6 4.3351 -2.4714 0.0000 9 8 5.5471 -2.4689 0.0922 10 7 3.6695 -3.6389 -0.1028 11 6 4.2882 -4.9702 -0.2357 12 6 3.2103 -5.8404 -0.9278 13 6 1.9073 -5.3056 -0.2772 14 1 1.0145 -5.5154 -0.8662 15 6 1.8266 -5.8480 1.1592 16 7 1.6898 -4.7076 2.0700 17 6 1.6133 -4.7893 3.4348 18 1 1.6535 -5.7528 3.9211 19 6 1.4842 -3.6339 4.1931 20 7 1.4347 -2.4597 3.6004 21 14 1.3806 -3.7453 6.0550 22 1 -0.0408 -3.8758 6.4647 23 1 2.1415 -4.9316 6.5229 24 1 1.9586 -2.5172 6.6573 25 6 1.6412 -3.4655 1.2908 26 6 2.2106 -3.7928 -0.1016 27 1 1.7447 -3.1956 -0.8854 28 6 2.1953 -1.1956 -0.0053 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6537 2.1323 0.0004 33 1 4.5037 2.8351 -1.0264 34 1 3.7295 3.2737 0.5152 35 1 5.2777 2.3954 0.5150 36 1 5.3611 0.0276 0.0014 37 1 4.5301 -5.3759 0.7467 38 1 5.1846 -4.9139 -0.8533 39 1 3.3556 -6.8963 -0.6995 40 1 3.2060 -5.6728 -2.0050 41 1 2.7357 -6.4010 1.3956 42 1 0.9611 -6.5033 1.2571 43 1 1.3441 -1.6524 4.1303 44 1 0.6110 -3.1205 1.2035 45 1 2.2512 -2.7003 1.7710 46 1 1.6552 -2.1310 -0.0098 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076497989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:38 Heat of formation + Delta-G solvation = 48.981585 kcal Electronic energy + Delta-G solvation = -27811.109785 eV Core-core repulsion = 24281.344207 eV Total energy + Delta-G solvation = -3529.765579 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.70806 -38.83355 -37.61549 -34.61881 -33.57808 -32.53785 -31.77577 -30.66063 -29.06475 -27.07464 -26.70755 -26.13670 -24.76301 -23.80235 -21.53426 -21.03243 -20.54928 -19.54916 -18.65449 -17.14223 -16.63038 -15.87322 -15.70181 -15.13194 -14.73329 -14.65686 -14.21818 -13.86560 -13.65676 -13.31683 -13.04935 -13.02093 -12.96808 -12.70085 -12.53033 -12.31461 -12.12665 -11.95622 -11.70696 -11.54707 -11.24912 -11.18337 -11.08162 -11.03205 -10.77158 -10.74732 -10.46844 -10.21014 -10.03149 -9.82753 -9.71820 -9.36008 -8.69521 -8.45655 -8.17866 -8.08265 -6.86705 -5.70736 -3.09653 1.29879 1.74198 3.28014 3.38621 3.44286 3.44361 3.46353 4.24100 4.45844 4.70428 4.73642 4.99623 5.09119 5.12874 5.16870 5.38031 5.40168 5.47200 5.50674 5.56194 5.66187 5.69077 5.72297 5.76390 5.81740 5.84020 5.91314 5.95740 5.98794 6.03568 6.12696 6.15549 6.30951 6.33860 6.36649 6.46856 6.59784 6.63739 6.73755 6.78709 6.85689 6.92669 7.18950 7.30712 7.57566 7.74690 8.00673 8.28512 8.63953 9.17980 9.79351 10.40642 11.35383 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010290 B = 0.006461 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.512807 B = 4332.968379 C = 5658.627900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.088 4.088 3 C -0.100 4.100 4 C -0.105 4.105 5 C -0.108 4.108 6 C -0.070 4.070 7 C -0.120 4.120 8 C 0.580 3.420 9 O -0.554 6.554 10 N -0.592 5.592 11 C 0.112 3.888 12 C -0.125 4.125 13 C -0.111 4.111 14 H 0.099 0.901 15 C 0.140 3.860 16 N -0.597 5.597 17 C -0.229 4.229 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.916 5.916 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.282 1.282 24 H -0.291 1.291 25 C 0.146 3.854 26 C 0.088 3.912 27 H 0.091 0.909 28 C -0.107 4.107 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.118 0.882 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.127 0.873 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.027 0.973 42 H 0.023 0.977 43 H 0.253 0.747 44 H 0.027 0.973 45 H 0.112 0.888 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.519 3.254 -11.994 12.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.118 4.118 4 C -0.105 4.105 5 C -0.165 4.165 6 C -0.089 4.089 7 C -0.123 4.123 8 C 0.371 3.629 9 O -0.434 6.434 10 N -0.324 5.324 11 C -0.011 4.011 12 C -0.163 4.163 13 C -0.130 4.130 14 H 0.117 0.883 15 C 0.014 3.986 16 N -0.323 5.323 17 C -0.357 4.357 18 H 0.096 0.904 19 C -0.202 4.202 20 N -0.564 5.564 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.207 1.207 24 H -0.217 1.217 25 C 0.021 3.979 26 C -0.017 4.017 27 H 0.109 0.891 28 C -0.124 4.124 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.145 0.855 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.041 0.959 43 H 0.064 0.936 44 H 0.045 0.955 45 H 0.129 0.871 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.159 3.449 -11.735 12.233 hybrid contribution -0.156 -0.036 1.185 1.195 sum 0.003 3.413 -10.551 11.089 Atomic orbital electron populations 1.20766 0.91038 1.03505 1.01561 1.19822 0.96238 0.92744 0.99958 1.21034 0.93427 0.97536 0.99811 1.19712 0.93781 0.94942 1.02049 1.20724 0.99969 0.93923 1.01869 1.20994 0.99994 0.90552 0.97328 1.19752 0.93872 0.92921 1.05745 1.17892 0.86419 0.82749 0.75854 1.90696 1.13872 1.87277 1.51536 1.48058 1.07033 1.05771 1.71502 1.22158 0.95996 0.82199 1.00732 1.22831 0.94508 0.99557 0.99405 1.23090 0.97728 0.94256 0.97919 0.88315 1.21223 0.98207 0.91636 0.87491 1.44122 1.86281 1.00068 1.01823 1.19010 1.43447 0.93235 0.79966 0.90417 1.24773 1.01950 0.95324 0.98137 1.69797 1.56457 0.96836 1.33296 0.86111 0.77560 0.76950 0.85091 1.21602 1.20741 1.21676 1.22176 0.98673 0.91542 0.85551 1.23185 0.80994 0.96429 1.01044 0.89136 1.22963 0.93670 1.00819 0.94950 0.91758 0.90592 0.91825 0.86377 0.91575 0.91739 0.91633 0.85463 0.91068 0.91025 0.89873 0.91070 0.95495 0.95875 0.93628 0.95525 0.87087 0.81111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 10.01 36.00 0.36 -1.16 16 2 C -0.09 -1.42 5.87 -104.68 -0.61 -2.03 16 3 C -0.10 -1.48 9.35 -39.49 -0.37 -1.85 16 4 C -0.10 -1.59 5.87 -104.68 -0.61 -2.21 16 5 C -0.11 -1.24 10.01 36.01 0.36 -0.88 16 6 C -0.07 -1.24 9.24 -39.19 -0.36 -1.60 16 7 C -0.12 -2.34 5.66 -104.97 -0.59 -2.94 16 8 C 0.58 12.31 7.47 -12.32 -0.09 12.22 16 9 O -0.55 -12.96 16.66 5.33 0.09 -12.87 16 10 N -0.59 -11.41 3.02 -168.40 -0.51 -11.92 16 11 C 0.11 1.88 6.42 -2.56 -0.02 1.87 16 12 C -0.12 -1.66 6.30 -24.61 -0.16 -1.82 16 13 C -0.11 -1.73 4.25 -87.88 -0.37 -2.11 16 14 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 15 C 0.14 2.74 6.41 -3.60 -0.02 2.72 16 16 N -0.60 -14.64 3.38 -171.95 -0.58 -15.22 16 17 C -0.23 -6.24 10.25 -15.06 -0.15 -6.39 16 18 H 0.08 2.07 7.83 -52.48 -0.41 1.65 16 19 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 20 N -0.92 -26.02 10.16 55.49 0.56 -25.46 16 21 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 C 0.15 3.32 3.38 -3.43 -0.01 3.31 16 26 C 0.09 1.59 2.71 -66.11 -0.18 1.41 16 27 H 0.09 1.45 6.17 -51.93 -0.32 1.13 16 28 C -0.11 -1.94 6.75 -39.19 -0.26 -2.21 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.14 8.09 -51.93 -0.42 0.72 16 31 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 32 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 35 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 36 H 0.13 2.21 7.66 -52.49 -0.40 1.80 16 37 H 0.07 1.34 7.49 -51.93 -0.39 0.95 16 38 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 39 H 0.08 0.97 7.96 -51.93 -0.41 0.55 16 40 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 41 H 0.03 0.53 6.78 -51.93 -0.35 0.18 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.03 0.64 7.87 -51.93 -0.41 0.23 16 45 H 0.11 2.91 4.41 -51.93 -0.23 2.69 16 46 H 0.17 3.13 1.74 -59.43 -0.10 3.03 16 LS Contribution 354.91 15.07 5.35 5.35 Total: -1.00 -32.29 354.91 -10.11 -42.40 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -6.80 Total: 4.53 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -3.20 Total: -3.93 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.52 Total: -52.60 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.09 Total: -12.87 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.29 -10.11 -42.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076497989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.384 kcal (2) G-P(sol) polarization free energy of solvation -32.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds