Wall clock time and date at job start Tue Mar 31 2020 10:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38365 * 119.92920 * 2 1 4 4 C 1.38355 * 120.29108 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.92295 * 180.02562 * 4 3 2 6 6 C 1.37960 * 120.14875 * 0.02562 * 4 3 2 7 7 C 1.39574 * 119.84966 * 359.97438 * 6 4 3 8 8 C 1.47854 * 120.14056 * 179.97438 * 7 6 4 9 9 O 1.21545 * 120.00070 * 5.05137 * 8 7 6 10 10 N 1.34779 * 119.99554 * 185.05258 * 8 7 6 11 11 C 1.47409 * 125.58380 * 174.25840 * 10 8 7 12 12 C 1.54862 * 104.81307 * 204.43497 * 11 10 8 13 13 C 1.55159 * 101.73623 * 322.76945 * 12 11 10 14 14 H 1.09003 * 113.25637 * 158.95219 * 13 12 11 15 15 C 1.53749 * 108.31448 * 285.38755 * 13 12 11 16 16 N 1.46593 * 108.11198 * 124.37198 * 15 13 12 17 17 C 1.36933 * 125.31402 * 181.28523 * 16 15 13 18 18 H 1.08007 * 119.99610 * 0.02562 * 17 16 15 19 19 C 1.38808 * 120.00031 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00263 * 0.02562 * 19 17 16 21 21 Si 1.86810 * 119.99805 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47019 * 270.00094 * 21 19 17 23 23 H 1.48498 * 109.47138 * 30.00157 * 21 19 17 24 24 H 1.48496 * 109.46899 * 150.00210 * 21 19 17 25 25 C 1.46711 * 109.37383 * 1.55591 * 16 15 13 26 26 C 1.46706 * 125.58824 * 354.29897 * 10 8 7 27 27 H 1.08997 * 111.53062 * 56.07130 * 26 10 8 28 28 C 1.37961 * 119.92980 * 180.25275 * 2 1 3 29 29 H 1.09004 * 109.47269 * 90.00383 * 1 2 3 30 30 H 1.09003 * 109.47459 * 209.99776 * 1 2 3 31 31 H 1.09003 * 109.47246 * 330.00302 * 1 2 3 32 32 H 1.07993 * 119.85029 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.47168 * 270.01660 * 5 4 3 34 34 H 1.08996 * 109.47614 * 30.02101 * 5 4 3 35 35 H 1.09003 * 109.46602 * 150.02175 * 5 4 3 36 36 H 1.07994 * 120.07059 * 180.02562 * 6 4 3 37 37 H 1.09003 * 110.36465 * 85.60113 * 11 10 8 38 38 H 1.08998 * 110.46105 * 323.32406 * 11 10 8 39 39 H 1.08999 * 110.97588 * 204.65417 * 12 11 10 40 40 H 1.09009 * 110.97369 * 80.88398 * 12 11 10 41 41 H 1.09005 * 109.74304 * 4.70670 * 15 13 12 42 42 H 1.08998 * 109.73844 * 244.03896 * 15 13 12 43 43 H 0.96993 * 119.99992 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.98886 * 101.13593 * 25 16 15 45 45 H 1.09004 * 109.98435 * 222.44244 * 25 16 15 46 46 H 1.08011 * 120.06974 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1991 0.0000 4 6 3.5808 1.2079 0.0005 5 6 4.3243 2.5187 0.0011 6 6 4.2812 0.0193 0.0005 7 6 3.5910 -1.1938 0.0005 8 6 4.3351 -2.4714 0.0000 9 8 5.5471 -2.4689 0.0922 10 7 3.6695 -3.6389 -0.1028 11 6 4.2882 -4.9702 -0.2357 12 6 3.2103 -5.8404 -0.9278 13 6 1.9073 -5.3056 -0.2772 14 1 1.0145 -5.5154 -0.8662 15 6 1.8266 -5.8480 1.1592 16 7 1.6898 -4.7076 2.0700 17 6 1.6133 -4.7893 3.4348 18 1 1.6535 -5.7528 3.9211 19 6 1.4842 -3.6339 4.1931 20 7 1.4347 -2.4597 3.6004 21 14 1.3806 -3.7453 6.0550 22 1 -0.0408 -3.8758 6.4647 23 1 2.1415 -4.9316 6.5229 24 1 1.9586 -2.5172 6.6573 25 6 1.6412 -3.4655 1.2908 26 6 2.2106 -3.7928 -0.1016 27 1 1.7447 -3.1956 -0.8854 28 6 2.1953 -1.1956 -0.0053 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6537 2.1323 0.0004 33 1 4.5037 2.8351 -1.0264 34 1 3.7295 3.2737 0.5152 35 1 5.2777 2.3954 0.5150 36 1 5.3611 0.0276 0.0014 37 1 4.5301 -5.3759 0.7467 38 1 5.1846 -4.9139 -0.8533 39 1 3.3556 -6.8963 -0.6995 40 1 3.2060 -5.6728 -2.0050 41 1 2.7357 -6.4010 1.3956 42 1 0.9611 -6.5033 1.2571 43 1 1.3441 -1.6524 4.1303 44 1 0.6110 -3.1205 1.2035 45 1 2.2512 -2.7003 1.7710 46 1 1.6552 -2.1310 -0.0098 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076497989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:37 Heat of formation + Delta-G solvation = 30.448016 kcal Electronic energy + Delta-G solvation = -27811.913461 eV Core-core repulsion = 24281.344207 eV Total energy + Delta-G solvation = -3530.569254 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.17468 -40.15938 -39.19463 -36.38590 -34.81268 -33.96757 -33.48970 -32.05402 -30.74979 -28.24982 -28.15488 -27.37917 -26.59861 -25.22861 -22.92051 -22.68140 -21.88824 -20.89187 -20.18878 -18.91366 -18.13623 -17.33957 -17.20570 -16.67448 -16.46048 -16.00509 -15.73631 -15.60929 -14.82460 -14.68379 -14.54126 -14.38730 -14.20509 -13.95626 -13.94029 -13.73845 -13.48125 -13.32841 -13.05573 -12.94834 -12.83574 -12.73692 -12.60471 -12.40016 -12.25556 -12.13982 -12.02850 -11.86846 -11.73392 -11.45178 -11.30638 -10.89487 -10.71999 -9.87034 -9.55254 -9.43833 -8.82938 -7.78764 -5.18479 -0.06678 0.46256 1.42604 1.44431 1.51898 1.78553 2.00882 2.47454 2.88088 3.30551 3.37375 3.40485 3.65205 3.79332 3.90229 3.92165 3.96488 4.12851 4.21621 4.34491 4.41368 4.42556 4.51569 4.54906 4.56724 4.70195 4.76176 4.80471 4.84890 4.87484 4.90147 4.94256 5.04491 5.09648 5.12905 5.18667 5.25207 5.33984 5.38456 5.40349 5.45388 5.53829 5.58224 5.66914 5.82830 6.07097 6.28779 6.47594 7.05612 7.12443 7.81614 8.41054 9.23566 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010290 B = 0.006461 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.512807 B = 4332.968379 C = 5658.627900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.096 4.096 3 C -0.097 4.097 4 C -0.101 4.101 5 C -0.106 4.106 6 C -0.091 4.091 7 C -0.147 4.147 8 C 0.567 3.433 9 O -0.592 6.592 10 N -0.594 5.594 11 C 0.101 3.899 12 C -0.104 4.104 13 C -0.098 4.098 14 H 0.138 0.862 15 C 0.132 3.868 16 N -0.621 5.621 17 C -0.240 4.240 18 H 0.078 0.922 19 C -0.060 4.060 20 N -0.934 5.934 21 Si 0.969 3.031 22 H -0.282 1.282 23 H -0.275 1.275 24 H -0.300 1.300 25 C 0.157 3.843 26 C 0.094 3.906 27 H 0.117 0.883 28 C -0.121 4.121 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.154 0.846 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.043 0.957 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.024 0.976 42 H 0.032 0.968 43 H 0.244 0.756 44 H 0.008 0.992 45 H 0.074 0.926 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.822 3.497 -13.744 14.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.096 4.096 3 C -0.115 4.115 4 C -0.101 4.101 5 C -0.163 4.163 6 C -0.110 4.110 7 C -0.150 4.150 8 C 0.359 3.641 9 O -0.475 6.475 10 N -0.324 5.324 11 C -0.021 4.021 12 C -0.141 4.141 13 C -0.117 4.117 14 H 0.156 0.844 15 C 0.007 3.993 16 N -0.347 5.347 17 C -0.369 4.369 18 H 0.095 0.905 19 C -0.253 4.253 20 N -0.583 5.583 21 Si 0.799 3.201 22 H -0.209 1.209 23 H -0.201 1.201 24 H -0.227 1.227 25 C 0.031 3.969 26 C -0.010 4.010 27 H 0.134 0.866 28 C -0.139 4.139 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.172 0.828 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.138 0.862 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.042 0.958 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.026 0.974 45 H 0.092 0.908 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.166 3.640 -13.509 14.039 hybrid contribution 0.253 -0.104 1.764 1.785 sum -0.913 3.536 -11.745 12.300 Atomic orbital electron populations 1.20780 0.89182 1.03155 1.03267 1.20212 0.97715 0.92598 0.99091 1.21452 0.93417 0.98455 0.98147 1.20146 0.94353 0.95545 1.00068 1.20803 0.99748 0.92208 1.03500 1.21132 0.99899 0.91286 0.98662 1.19848 0.94612 0.92743 1.07803 1.18374 0.86297 0.84023 0.75411 1.90644 1.15313 1.87974 1.53568 1.48205 1.07714 1.06115 1.70389 1.22359 0.97923 0.81845 0.99980 1.22833 0.90901 0.99867 1.00546 1.23179 1.00597 0.91775 0.96114 0.84419 1.21467 0.98209 0.90514 0.89081 1.44428 1.86131 1.02349 1.01787 1.19320 1.42518 0.93196 0.81889 0.90451 1.25505 1.02705 0.95324 1.01802 1.70056 1.57479 0.96865 1.33881 0.85213 0.77639 0.76450 0.80840 1.20864 1.20060 1.22666 1.21862 0.97097 0.90196 0.87717 1.23119 0.80211 0.98822 0.98862 0.86571 1.22939 0.93149 1.01643 0.96152 0.88924 0.92781 0.90258 0.82811 0.89466 0.89767 0.91742 0.86245 0.93854 0.90338 0.87400 0.87822 0.95790 0.94954 0.94658 0.97396 0.90846 0.81723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.76 10.01 71.23 0.71 -2.04 16 2 C -0.10 -3.04 5.87 -19.90 -0.12 -3.15 16 3 C -0.10 -2.69 9.35 22.33 0.21 -2.48 16 4 C -0.10 -2.97 5.87 -19.90 -0.12 -3.09 16 5 C -0.11 -2.21 10.01 71.24 0.71 -1.49 16 6 C -0.09 -3.32 9.24 22.53 0.21 -3.11 16 7 C -0.15 -5.97 5.66 -20.09 -0.11 -6.09 16 8 C 0.57 25.16 7.47 86.79 0.65 25.80 16 9 O -0.59 -29.24 16.66 -3.86 -0.06 -29.31 16 10 N -0.59 -23.22 3.02 -804.98 -2.43 -25.65 16 11 C 0.10 3.37 6.42 86.84 0.56 3.93 16 12 C -0.10 -2.42 6.30 31.97 0.20 -2.22 16 13 C -0.10 -2.80 4.25 -9.02 -0.04 -2.83 16 14 H 0.14 2.97 8.14 -2.39 -0.02 2.95 16 15 C 0.13 5.03 6.41 86.61 0.56 5.58 16 16 N -0.62 -30.93 3.38 -697.91 -2.36 -33.29 16 17 C -0.24 -13.39 10.25 84.03 0.86 -12.53 16 18 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 19 C -0.06 -3.39 5.48 84.86 0.47 -2.93 16 20 N -0.93 -55.00 10.16 21.65 0.22 -54.78 16 21 Si 0.97 46.52 29.55 68.60 2.03 48.55 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 25 C 0.16 7.31 3.38 86.66 0.29 7.60 16 26 C 0.09 3.33 2.71 46.06 0.12 3.46 16 27 H 0.12 3.57 6.17 -2.39 -0.01 3.56 16 28 C -0.12 -4.51 6.75 22.53 0.15 -4.35 16 29 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 30 H 0.05 1.63 8.09 -2.39 -0.02 1.61 16 31 H 0.08 1.77 8.08 -2.39 -0.02 1.75 16 32 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 1.44 8.08 -2.39 -0.02 1.42 16 35 H 0.06 1.36 8.08 -2.39 -0.02 1.34 16 36 H 0.12 4.40 7.66 -2.91 -0.02 4.38 16 37 H 0.04 1.67 7.49 -2.39 -0.02 1.65 16 38 H 0.08 2.49 8.09 -2.39 -0.02 2.47 16 39 H 0.11 2.06 7.96 -2.39 -0.02 2.05 16 40 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.02 0.93 6.78 -2.38 -0.02 0.91 16 42 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 44 H 0.01 0.41 7.87 -2.39 -0.02 0.39 16 45 H 0.07 4.03 4.41 -2.38 -0.01 4.02 16 46 H 0.17 6.16 1.74 -9.43 -0.02 6.14 16 Total: -1.00 -74.92 354.91 3.69 -71.23 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.97 Total: 23.18 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 5.31 Total: 0.06 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -4.56 Total: -113.72 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.06 Total: -29.31 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -74.92 3.69 -71.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076497989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.676 kcal (2) G-P(sol) polarization free energy of solvation -74.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds