Wall clock time and date at job start Tue Mar 31 2020 10:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38373 * 119.93227 * 2 1 4 4 C 1.38337 * 120.29281 * 180.02562 * 3 2 1 5 5 C 1.37975 * 120.14661 * 0.25762 * 4 3 2 6 6 C 1.39558 * 119.84974 * 359.47582 * 5 4 3 7 7 C 1.47843 * 120.14243 * 180.24969 * 6 5 4 8 8 O 1.21555 * 120.00293 * 130.11627 * 7 6 5 9 9 N 1.34777 * 120.00057 * 310.11281 * 7 6 5 10 10 C 1.47398 * 125.58897 * 4.87119 * 9 7 6 11 11 C 1.54857 * 104.80976 * 204.60348 * 10 9 7 12 12 C 1.55123 * 101.77838 * 322.81352 * 11 10 9 13 13 H 1.09006 * 113.45843 * 159.24250 * 12 11 10 14 14 C 1.54036 * 108.25915 * 286.08887 * 12 11 10 15 15 N 1.46706 * 106.83049 * 135.80697 * 14 12 11 16 16 C 1.36933 * 125.32639 * 161.80077 * 15 14 12 17 17 H 1.08004 * 119.99510 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00525 * 180.02562 * 16 15 14 19 19 N 1.31626 * 119.99620 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00498 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47069 * 59.99882 * 20 18 16 22 22 H 1.48493 * 109.47406 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47019 * 300.00206 * 20 18 16 24 24 C 1.46633 * 109.35339 * 341.82030 * 15 14 12 25 25 C 1.46734 * 125.58823 * 184.55515 * 9 7 6 26 26 H 1.09001 * 111.32644 * 56.13467 * 25 9 7 27 27 C 1.37940 * 119.92189 * 180.02562 * 2 1 3 28 28 C 1.50695 * 120.07607 * 359.97438 * 27 2 1 29 29 H 1.09010 * 109.47066 * 89.99554 * 1 2 3 30 30 H 1.08995 * 109.47845 * 209.99828 * 1 2 3 31 31 H 1.09002 * 109.46970 * 330.00027 * 1 2 3 32 32 H 1.08003 * 119.85279 * 0.02562 * 3 2 1 33 33 H 1.08004 * 119.92333 * 179.97438 * 4 3 2 34 34 H 1.07996 * 120.07311 * 179.71647 * 5 4 3 35 35 H 1.08994 * 110.36715 * 323.43242 * 10 9 7 36 36 H 1.09003 * 110.37298 * 85.66063 * 10 9 7 37 37 H 1.08998 * 110.96610 * 80.93358 * 11 10 9 38 38 H 1.08997 * 110.96914 * 204.68843 * 11 10 9 39 39 H 1.08999 * 109.99307 * 255.14953 * 14 12 11 40 40 H 1.08999 * 109.98951 * 16.46689 * 14 12 11 41 41 H 0.96993 * 119.99728 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.75929 * 120.92956 * 24 15 14 43 43 H 1.08997 * 109.76074 * 241.62868 * 24 15 14 44 44 H 1.09002 * 109.47159 * 84.45321 * 28 27 2 45 45 H 1.08997 * 109.47295 * 204.45190 * 28 27 2 46 46 H 1.09001 * 109.47019 * 324.45550 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5808 1.2079 -0.0005 5 6 4.2812 0.0191 -0.0064 6 6 3.5910 -1.1938 -0.0008 7 6 4.3350 -2.4714 -0.0015 8 8 4.0584 -3.3363 0.8066 9 7 5.3200 -2.6771 -0.8982 10 6 5.8243 -1.6823 -1.8618 11 6 6.4290 -2.5198 -3.0154 12 6 7.0625 -3.7083 -2.2456 13 1 7.2293 -4.5882 -2.8670 14 6 8.3372 -3.2038 -1.5432 15 7 8.3191 -3.7544 -0.1835 16 6 9.4039 -3.8496 0.6467 17 1 10.3710 -3.5033 0.3132 18 6 9.2608 -4.3921 1.9164 19 7 8.0822 -4.8145 2.3225 20 14 10.7408 -4.5226 3.0486 21 1 11.2945 -3.1673 3.2978 22 1 10.3258 -5.1319 4.3376 23 1 11.7788 -5.3716 2.4106 24 6 6.9578 -4.1873 0.1474 25 6 6.0705 -3.9261 -1.0707 26 1 5.4033 -4.7657 -1.2661 27 6 2.1950 -1.1955 -0.0005 28 6 1.4415 -2.5006 -0.0005 29 1 -0.3634 0.0001 -1.0278 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6539 2.1325 0.0004 33 1 4.1136 2.1473 -0.0009 34 1 5.3611 0.0273 -0.0115 35 1 5.0067 -1.0630 -2.2307 36 1 6.5913 -1.0609 -1.3993 37 1 5.6508 -2.8661 -3.6955 38 1 7.1897 -1.9528 -3.5519 39 1 9.2205 -3.5560 -2.0760 40 1 8.3348 -2.1145 -1.5041 41 1 7.9822 -5.1932 3.2098 42 1 6.9569 -5.2511 0.3852 43 1 6.5875 -3.6190 1.0006 44 1 1.1734 -2.7653 -1.0234 45 1 2.0701 -3.2831 0.4244 46 1 0.5359 -2.3972 0.5973 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076520493.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:52 Heat of formation + Delta-G solvation = 24.978288 kcal Electronic energy + Delta-G solvation = -27122.527327 eV Core-core repulsion = 23591.720887 eV Total energy + Delta-G solvation = -3530.806440 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.55849 -39.28440 -37.46785 -34.82093 -33.49021 -32.34977 -31.80240 -30.84880 -28.92257 -27.64584 -26.56901 -26.21167 -24.66245 -23.72480 -21.99450 -20.91252 -20.55028 -19.63128 -18.57283 -17.07876 -16.59490 -16.08707 -15.94618 -15.75185 -14.77166 -14.58585 -14.28732 -13.92768 -13.80906 -13.72619 -13.26451 -13.07241 -12.89488 -12.77473 -12.60203 -12.58273 -12.15405 -11.93973 -11.87117 -11.71053 -11.46154 -11.40553 -11.05214 -10.98457 -10.90165 -10.68595 -10.45909 -10.21074 -10.13829 -9.84154 -9.65322 -9.32849 -8.75487 -8.60408 -8.53395 -8.12580 -6.76340 -5.62507 -2.98839 1.06382 1.32316 3.06180 3.34436 3.44124 3.47859 3.50519 3.75318 4.53015 4.59886 4.71422 4.80454 4.82004 4.94885 5.02634 5.11161 5.16314 5.28958 5.41250 5.50610 5.52348 5.54062 5.62107 5.65590 5.69769 5.75731 5.77962 5.79849 5.88677 5.91056 5.97749 6.04162 6.24281 6.27081 6.35092 6.38149 6.42308 6.52103 6.60409 6.61011 6.67004 6.88904 6.92404 7.59972 7.71020 7.94065 8.00547 8.34749 8.59456 9.28515 9.89649 10.53175 11.47104 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.004020 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.595391 B = 6963.102469 C = 7451.797998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.098 4.098 3 C -0.104 4.104 4 C -0.128 4.128 5 C -0.089 4.089 6 C -0.112 4.112 7 C 0.572 3.428 8 O -0.520 6.520 9 N -0.596 5.596 10 C 0.101 3.899 11 C -0.124 4.124 12 C -0.111 4.111 13 H 0.098 0.902 14 C 0.142 3.858 15 N -0.602 5.602 16 C -0.236 4.236 17 H 0.077 0.923 18 C -0.005 4.005 19 N -0.914 5.914 20 Si 0.911 3.089 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.175 3.825 25 C 0.116 3.884 26 H 0.078 0.922 27 C -0.038 4.038 28 C -0.138 4.138 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.034 0.966 40 H 0.017 0.983 41 H 0.253 0.747 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.095 0.905 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.180 10.966 -11.177 20.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.098 4.098 3 C -0.122 4.122 4 C -0.146 4.146 5 C -0.108 4.108 6 C -0.115 4.115 7 C 0.360 3.640 8 O -0.397 6.397 9 N -0.329 5.329 10 C -0.022 4.022 11 C -0.163 4.163 12 C -0.130 4.130 13 H 0.116 0.884 14 C 0.016 3.984 15 N -0.329 5.329 16 C -0.364 4.364 17 H 0.095 0.905 18 C -0.202 4.202 19 N -0.561 5.561 20 Si 0.741 3.259 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.050 3.950 25 C 0.013 3.987 26 H 0.096 0.904 27 C -0.038 4.038 28 C -0.194 4.194 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.052 0.948 40 H 0.035 0.965 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.113 0.887 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.351 10.410 -10.446 19.893 hybrid contribution 0.945 0.126 0.682 1.173 sum -12.405 10.536 -9.764 18.980 Atomic orbital electron populations 1.20826 0.91036 1.02930 1.02258 1.19679 0.96111 0.92335 1.01642 1.21115 0.94256 0.97305 0.99503 1.21027 0.94161 0.97849 1.01541 1.21349 1.00299 0.91385 0.97722 1.19827 0.93542 0.93508 1.04666 1.17841 0.79083 0.86744 0.80313 1.90785 1.66664 1.45227 1.37007 1.48325 1.34832 1.14405 1.35373 1.22385 0.98275 0.91991 0.89586 1.22760 1.00022 0.96923 0.96563 1.23157 0.96303 0.98082 0.95485 0.88358 1.21296 0.94178 0.95792 0.87149 1.44218 1.05762 1.72146 1.10780 1.18951 0.87567 1.35578 0.94295 0.90539 1.24837 0.96893 1.00929 0.97554 1.69987 1.20994 1.46075 1.19038 0.86228 0.81747 0.77663 0.80253 1.21242 1.21597 1.21163 1.21142 0.82274 0.99907 0.91691 1.22521 0.92753 0.85511 0.97958 0.90423 1.19714 0.91813 0.95494 0.96819 1.21150 1.00724 0.95318 1.02216 0.91237 0.91035 0.91664 0.85983 0.85644 0.85362 0.91074 0.91132 0.91081 0.89944 0.94777 0.96513 0.93602 0.92977 0.92578 0.91388 0.88652 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.60 36.00 0.35 -0.63 16 2 C -0.10 -1.14 5.87 -104.68 -0.61 -1.75 16 3 C -0.10 -1.11 9.69 -39.50 -0.38 -1.49 16 4 C -0.13 -1.46 10.03 -39.64 -0.40 -1.86 16 5 C -0.09 -1.25 8.17 -39.19 -0.32 -1.57 16 6 C -0.11 -1.81 5.15 -104.97 -0.54 -2.35 16 7 C 0.57 11.13 6.45 -12.33 -0.08 11.05 16 8 O -0.52 -12.10 14.49 5.32 0.08 -12.02 16 9 N -0.60 -10.84 2.99 -163.82 -0.49 -11.33 16 10 C 0.10 1.44 4.99 -2.57 -0.01 1.42 16 11 C -0.12 -1.57 6.35 -24.63 -0.16 -1.73 16 12 C -0.11 -1.83 4.35 -87.74 -0.38 -2.22 16 13 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 14 C 0.14 2.87 6.45 -3.39 -0.02 2.85 16 15 N -0.60 -15.66 3.38 -172.36 -0.58 -16.25 16 16 C -0.24 -6.71 10.25 -15.06 -0.15 -6.87 16 17 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 18 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 19 N -0.91 -28.24 10.24 55.49 0.57 -27.67 16 20 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 C 0.18 4.52 4.87 -4.00 -0.02 4.50 16 25 C 0.12 2.31 3.58 -66.61 -0.24 2.07 16 26 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 27 C -0.04 -0.53 5.91 -104.23 -0.62 -1.15 16 28 C -0.14 -1.83 9.17 36.00 0.33 -1.50 16 29 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.07 0.60 6.03 -51.93 -0.31 0.28 16 31 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 34 H 0.13 1.80 6.85 -52.49 -0.36 1.44 16 35 H 0.07 0.87 7.06 -51.93 -0.37 0.51 16 36 H 0.07 1.05 6.65 -51.93 -0.35 0.71 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.02 0.34 6.52 -51.93 -0.34 0.00 16 41 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 42 H 0.05 1.51 7.33 -51.93 -0.38 1.13 16 43 H 0.06 1.68 6.52 -51.93 -0.34 1.34 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.09 1.57 5.35 -51.93 -0.28 1.29 16 46 H 0.07 0.79 6.18 -51.93 -0.32 0.47 16 LS Contribution 354.10 15.07 5.34 5.34 Total: -1.00 -34.33 354.10 -10.28 -44.61 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.81 Total: 1.09 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -3.36 Total: -1.46 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.50 Total: -55.24 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.08 Total: -12.02 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.33 -10.28 -44.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076520493.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.583 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds