Wall clock time and date at job start Tue Mar 31 2020 10:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38373 * 119.93227 * 2 1 4 4 C 1.38337 * 120.29281 * 180.02562 * 3 2 1 5 5 C 1.37975 * 120.14661 * 0.25762 * 4 3 2 6 6 C 1.39558 * 119.84974 * 359.47582 * 5 4 3 7 7 C 1.47843 * 120.14243 * 180.24969 * 6 5 4 8 8 O 1.21555 * 120.00293 * 130.11627 * 7 6 5 9 9 N 1.34777 * 120.00057 * 310.11281 * 7 6 5 10 10 C 1.47398 * 125.58897 * 4.87119 * 9 7 6 11 11 C 1.54857 * 104.80976 * 204.60348 * 10 9 7 12 12 C 1.55123 * 101.77838 * 322.81352 * 11 10 9 13 13 H 1.09006 * 113.45843 * 159.24250 * 12 11 10 14 14 C 1.54036 * 108.25915 * 286.08887 * 12 11 10 15 15 N 1.46706 * 106.83049 * 135.80697 * 14 12 11 16 16 C 1.36933 * 125.32639 * 161.80077 * 15 14 12 17 17 H 1.08004 * 119.99510 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00525 * 180.02562 * 16 15 14 19 19 N 1.31626 * 119.99620 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00498 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47069 * 59.99882 * 20 18 16 22 22 H 1.48493 * 109.47406 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47019 * 300.00206 * 20 18 16 24 24 C 1.46633 * 109.35339 * 341.82030 * 15 14 12 25 25 C 1.46734 * 125.58823 * 184.55515 * 9 7 6 26 26 H 1.09001 * 111.32644 * 56.13467 * 25 9 7 27 27 C 1.37940 * 119.92189 * 180.02562 * 2 1 3 28 28 C 1.50695 * 120.07607 * 359.97438 * 27 2 1 29 29 H 1.09010 * 109.47066 * 89.99554 * 1 2 3 30 30 H 1.08995 * 109.47845 * 209.99828 * 1 2 3 31 31 H 1.09002 * 109.46970 * 330.00027 * 1 2 3 32 32 H 1.08003 * 119.85279 * 0.02562 * 3 2 1 33 33 H 1.08004 * 119.92333 * 179.97438 * 4 3 2 34 34 H 1.07996 * 120.07311 * 179.71647 * 5 4 3 35 35 H 1.08994 * 110.36715 * 323.43242 * 10 9 7 36 36 H 1.09003 * 110.37298 * 85.66063 * 10 9 7 37 37 H 1.08998 * 110.96610 * 80.93358 * 11 10 9 38 38 H 1.08997 * 110.96914 * 204.68843 * 11 10 9 39 39 H 1.08999 * 109.99307 * 255.14953 * 14 12 11 40 40 H 1.08999 * 109.98951 * 16.46689 * 14 12 11 41 41 H 0.96993 * 119.99728 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.75929 * 120.92956 * 24 15 14 43 43 H 1.08997 * 109.76074 * 241.62868 * 24 15 14 44 44 H 1.09002 * 109.47159 * 84.45321 * 28 27 2 45 45 H 1.08997 * 109.47295 * 204.45190 * 28 27 2 46 46 H 1.09001 * 109.47019 * 324.45550 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5808 1.2079 -0.0005 5 6 4.2812 0.0191 -0.0064 6 6 3.5910 -1.1938 -0.0008 7 6 4.3350 -2.4714 -0.0015 8 8 4.0584 -3.3363 0.8066 9 7 5.3200 -2.6771 -0.8982 10 6 5.8243 -1.6823 -1.8618 11 6 6.4290 -2.5198 -3.0154 12 6 7.0625 -3.7083 -2.2456 13 1 7.2293 -4.5882 -2.8670 14 6 8.3372 -3.2038 -1.5432 15 7 8.3191 -3.7544 -0.1835 16 6 9.4039 -3.8496 0.6467 17 1 10.3710 -3.5033 0.3132 18 6 9.2608 -4.3921 1.9164 19 7 8.0822 -4.8145 2.3225 20 14 10.7408 -4.5226 3.0486 21 1 11.2945 -3.1673 3.2978 22 1 10.3258 -5.1319 4.3376 23 1 11.7788 -5.3716 2.4106 24 6 6.9578 -4.1873 0.1474 25 6 6.0705 -3.9261 -1.0707 26 1 5.4033 -4.7657 -1.2661 27 6 2.1950 -1.1955 -0.0005 28 6 1.4415 -2.5006 -0.0005 29 1 -0.3634 0.0001 -1.0278 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6539 2.1325 0.0004 33 1 4.1136 2.1473 -0.0009 34 1 5.3611 0.0273 -0.0115 35 1 5.0067 -1.0630 -2.2307 36 1 6.5913 -1.0609 -1.3993 37 1 5.6508 -2.8661 -3.6955 38 1 7.1897 -1.9528 -3.5519 39 1 9.2205 -3.5560 -2.0760 40 1 8.3348 -2.1145 -1.5041 41 1 7.9822 -5.1932 3.2098 42 1 6.9569 -5.2511 0.3852 43 1 6.5875 -3.6190 1.0006 44 1 1.1734 -2.7653 -1.0234 45 1 2.0701 -3.2831 0.4244 46 1 0.5359 -2.3972 0.5973 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076520493.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:51 Heat of formation + Delta-G solvation = 3.573438 kcal Electronic energy + Delta-G solvation = -27123.455510 eV Core-core repulsion = 23591.720887 eV Total energy + Delta-G solvation = -3531.734624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.91719 -40.48895 -38.93028 -36.60211 -34.55630 -33.87766 -33.05965 -32.46427 -30.62428 -28.74150 -27.92142 -27.32087 -26.60417 -24.98408 -23.27474 -22.45451 -21.75680 -21.01396 -20.04169 -18.92045 -18.17702 -17.37066 -17.12411 -16.82746 -16.69940 -15.96241 -15.62439 -15.45385 -15.12744 -14.85057 -14.71159 -14.48116 -14.12591 -13.97725 -13.88361 -13.58435 -13.48930 -13.45922 -13.02754 -12.98122 -12.80760 -12.74654 -12.60187 -12.50145 -12.40569 -12.19683 -11.89034 -11.87075 -11.80498 -11.62818 -11.43766 -10.85582 -10.69405 -9.79940 -9.61983 -9.54225 -8.92164 -7.85319 -5.24488 0.02126 0.37164 1.40278 1.45124 1.51852 1.69457 1.98317 2.46659 2.72666 3.30612 3.33000 3.54592 3.69525 3.78063 3.82966 3.90291 3.98594 4.08697 4.21455 4.23312 4.36682 4.42087 4.50906 4.54385 4.61498 4.66026 4.71034 4.73199 4.83465 4.85869 4.90690 4.94411 4.95364 5.09374 5.13445 5.14882 5.25193 5.36473 5.39091 5.42302 5.43154 5.47148 5.60339 5.65638 5.77943 6.00509 6.16711 6.54753 7.05180 7.13620 7.76949 8.39079 9.22842 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.004020 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.595391 B = 6963.102469 C = 7451.797998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.094 4.094 4 C -0.121 4.121 5 C -0.101 4.101 6 C -0.139 4.139 7 C 0.563 3.437 8 O -0.578 6.578 9 N -0.598 5.598 10 C 0.096 3.904 11 C -0.105 4.105 12 C -0.096 4.096 13 H 0.121 0.879 14 C 0.135 3.865 15 N -0.624 5.624 16 C -0.244 4.244 17 H 0.090 0.910 18 C -0.072 4.072 19 N -0.953 5.953 20 Si 0.981 3.019 21 H -0.274 1.274 22 H -0.300 1.300 23 H -0.270 1.270 24 C 0.196 3.804 25 C 0.117 3.883 26 H 0.074 0.926 27 C -0.056 4.056 28 C -0.133 4.133 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.161 0.839 33 H 0.156 0.844 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.047 0.953 40 H 0.030 0.970 41 H 0.242 0.758 42 H 0.001 0.999 43 H 0.000 1.000 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.769 14.342 -14.031 24.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.111 4.111 4 C -0.139 4.139 5 C -0.120 4.120 6 C -0.142 4.142 7 C 0.353 3.647 8 O -0.458 6.458 9 N -0.329 5.329 10 C -0.025 4.025 11 C -0.143 4.143 12 C -0.116 4.116 13 H 0.139 0.861 14 C 0.010 3.990 15 N -0.350 5.350 16 C -0.373 4.373 17 H 0.108 0.892 18 C -0.264 4.264 19 N -0.602 5.602 20 Si 0.809 3.191 21 H -0.200 1.200 22 H -0.226 1.226 23 H -0.196 1.196 24 C 0.069 3.931 25 C 0.013 3.987 26 H 0.092 0.908 27 C -0.057 4.057 28 C -0.189 4.189 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.178 0.822 33 H 0.174 0.826 34 H 0.137 0.863 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.134 0.866 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.019 0.981 43 H 0.018 0.982 44 H 0.100 0.900 45 H 0.073 0.927 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.908 13.835 -13.381 23.746 hybrid contribution 1.100 -0.856 1.571 2.100 sum -12.808 12.980 -11.810 21.725 Atomic orbital electron populations 1.20906 0.88577 1.03889 1.03578 1.20065 0.97876 0.91554 1.00096 1.21586 0.94061 0.98400 0.97088 1.21367 0.94814 0.97765 0.99941 1.21354 1.00014 0.91757 0.98850 1.19684 0.94323 0.92187 1.08003 1.18615 0.79101 0.87555 0.79426 1.90744 1.68353 1.47509 1.39229 1.48420 1.34128 1.14572 1.35815 1.22645 0.99025 0.91632 0.89213 1.22805 1.01119 0.94603 0.95758 1.23163 0.93156 1.00771 0.94500 0.86137 1.21590 0.96616 0.96213 0.84542 1.44536 1.05110 1.72281 1.13088 1.19475 0.88812 1.34263 0.94786 0.89232 1.25794 0.99704 1.01407 0.99536 1.70306 1.23526 1.47696 1.18692 0.85111 0.78397 0.78064 0.77526 1.20025 1.22620 1.19557 1.20638 0.83765 0.95821 0.92829 1.22263 0.92705 0.86930 0.96825 0.90796 1.19907 0.91203 0.96798 0.97751 1.21077 1.00613 0.94166 1.03087 0.89582 0.91232 0.89604 0.82165 0.82645 0.86322 0.88424 0.91937 0.88346 0.86638 0.93490 0.95243 0.94856 0.98077 0.98174 0.90005 0.92706 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 9.60 71.24 0.68 -0.84 16 2 C -0.10 -1.97 5.87 -19.90 -0.12 -2.09 16 3 C -0.09 -1.62 9.69 22.33 0.22 -1.41 16 4 C -0.12 -2.40 10.03 22.23 0.22 -2.18 16 5 C -0.10 -2.78 8.17 22.53 0.18 -2.59 16 6 C -0.14 -4.58 5.15 -20.09 -0.10 -4.68 16 7 C 0.56 23.48 6.45 86.79 0.56 24.04 16 8 O -0.58 -29.83 14.49 -3.89 -0.06 -29.88 16 9 N -0.60 -22.53 2.99 -790.48 -2.36 -24.89 16 10 C 0.10 2.59 4.99 86.84 0.43 3.02 16 11 C -0.11 -2.26 6.35 31.96 0.20 -2.06 16 12 C -0.10 -3.04 4.35 -8.92 -0.04 -3.08 16 13 H 0.12 3.31 8.14 -2.38 -0.02 3.30 16 14 C 0.13 5.31 6.45 86.69 0.56 5.87 16 15 N -0.62 -33.61 3.38 -699.22 -2.36 -35.98 16 16 C -0.24 -14.31 10.25 84.03 0.86 -13.45 16 17 H 0.09 4.87 7.83 -2.91 -0.02 4.85 16 18 C -0.07 -4.36 5.48 84.86 0.47 -3.90 16 19 N -0.95 -63.29 10.24 21.65 0.22 -63.07 16 20 Si 0.98 48.35 29.55 68.60 2.03 50.37 16 21 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 24 C 0.20 10.91 4.87 86.34 0.42 11.33 16 25 C 0.12 4.88 3.58 45.72 0.16 5.05 16 26 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 27 C -0.06 -1.56 5.91 -19.61 -0.12 -1.68 16 28 C -0.13 -3.64 9.17 71.23 0.65 -2.99 16 29 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.07 0.98 6.03 -2.39 -0.01 0.97 16 31 H 0.09 0.83 8.08 -2.39 -0.02 0.81 16 32 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 34 H 0.12 3.38 6.85 -2.91 -0.02 3.36 16 35 H 0.10 2.14 7.06 -2.39 -0.02 2.13 16 36 H 0.06 1.79 6.65 -2.39 -0.02 1.77 16 37 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.12 1.85 8.08 -2.39 -0.02 1.83 16 39 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 40 H 0.03 1.11 6.52 -2.39 -0.02 1.10 16 41 H 0.24 15.85 8.31 -92.71 -0.77 15.08 16 42 H 0.00 0.07 7.33 -2.39 -0.02 0.05 16 43 H 0.00 0.00 6.52 -2.39 -0.02 -0.01 16 44 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.05 1.98 5.35 -2.39 -0.01 1.96 16 46 H 0.09 2.01 6.18 -2.39 -0.01 1.99 16 Total: -1.00 -85.05 354.10 3.70 -81.35 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.98 Total: 13.73 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 5.25 Total: 8.38 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -4.50 Total: -123.94 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.06 Total: -29.88 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.37 kcal Total: -85.05 3.70 -81.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076520493.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.920 kcal (2) G-P(sol) polarization free energy of solvation -85.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds