Wall clock time and date at job start Tue Mar 31 2020 10:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38387 * 119.85086 * 2 1 4 4 C 1.37945 * 120.14027 * 179.71963 * 3 2 1 5 5 C 1.39593 * 119.85352 * 0.52734 * 4 3 2 6 6 C 1.47844 * 120.14054 * 179.72451 * 5 4 3 7 7 O 1.21556 * 119.99673 * 130.57393 * 6 5 4 8 8 N 1.34772 * 120.00308 * 310.57285 * 6 5 4 9 9 C 1.47409 * 125.58679 * 4.91109 * 8 6 5 10 10 C 1.54866 * 104.81520 * 204.39729 * 9 8 6 11 11 C 1.55170 * 101.73459 * 322.77200 * 10 9 8 12 12 H 1.08994 * 113.25578 * 158.11807 * 11 10 9 13 13 C 1.53757 * 108.30815 * 285.38378 * 11 10 9 14 14 N 1.46382 * 108.45187 * 123.94463 * 13 11 10 15 15 C 1.36934 * 125.49478 * 181.46155 * 14 13 11 16 16 H 1.07994 * 119.99923 * 0.31550 * 15 14 13 17 17 C 1.38810 * 119.99832 * 180.30978 * 15 14 13 18 18 N 1.31613 * 120.00493 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99595 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47480 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46867 * 120.00878 * 19 17 15 22 22 H 1.48503 * 109.47529 * 240.00230 * 19 17 15 23 23 C 1.46721 * 109.19165 * 1.71087 * 14 13 11 24 24 C 1.46708 * 125.58795 * 184.59631 * 8 6 5 25 25 H 1.09007 * 111.52805 * 56.11143 * 24 8 6 26 26 C 1.39549 * 119.71274 * 359.74315 * 5 4 3 27 27 C 1.50706 * 120.07421 * 180.02562 * 26 5 4 28 28 C 1.37980 * 119.85569 * 0.02562 * 26 5 4 29 29 H 1.09000 * 109.47191 * 269.72684 * 1 2 3 30 30 H 1.09003 * 109.46405 * 149.72735 * 1 2 3 31 31 H 1.08995 * 109.47045 * 29.73036 * 1 2 3 32 32 H 1.07998 * 119.92709 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.07022 * 180.26933 * 4 3 2 34 34 H 1.09000 * 110.36760 * 323.23028 * 9 8 6 35 35 H 1.08998 * 110.37002 * 85.56418 * 9 8 6 36 36 H 1.09001 * 110.97154 * 80.88311 * 10 9 8 37 37 H 1.08995 * 110.97054 * 204.61975 * 10 9 8 38 38 H 1.09008 * 109.74115 * 244.04519 * 13 11 10 39 39 H 1.08997 * 109.74919 * 4.70175 * 13 11 10 40 40 H 0.96999 * 120.00438 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.98529 * 222.44111 * 23 14 13 42 42 H 1.08995 * 109.98155 * 101.13723 * 23 14 13 43 43 H 1.08994 * 109.46949 * 266.11819 * 27 26 5 44 44 H 1.08995 * 109.46769 * 26.12201 * 27 26 5 45 45 H 1.09004 * 109.46966 * 146.11635 * 27 26 5 46 46 H 1.07998 * 119.93148 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5752 1.2072 0.0058 5 6 4.2763 0.0001 0.0006 6 6 5.7547 0.0002 0.0007 7 8 6.3624 -0.6880 0.7973 8 7 6.4286 0.7632 -0.8825 9 6 5.8232 1.7169 -1.8296 10 6 6.8538 1.8421 -2.9787 11 6 8.1977 1.7802 -2.2054 12 1 9.0389 1.4761 -2.8282 13 6 8.4071 3.1262 -1.4923 14 7 8.5908 2.8696 -0.0629 15 6 8.7758 3.8263 0.8992 16 1 8.7897 4.8710 0.6263 17 6 8.9455 3.4530 2.2254 18 7 8.9290 2.1797 2.5581 19 14 9.1986 4.7580 3.5378 20 1 9.1771 6.1031 2.9091 21 1 8.1109 4.6650 4.5445 22 1 10.5087 4.5432 4.2034 23 6 8.5513 1.4226 0.1763 24 6 7.8854 0.7856 -1.0544 25 1 8.2784 -0.2087 -1.2672 26 6 3.5755 -1.2067 -0.0051 27 6 4.3241 -2.5147 -0.0102 28 6 2.1957 -1.1998 -0.0060 29 1 -0.3633 -0.0049 1.0276 30 1 -0.3632 -0.8876 -0.5181 31 1 -0.3633 0.8924 -0.5096 32 1 1.6522 2.1335 -0.0004 33 1 4.1117 2.1446 0.0102 34 1 4.8782 1.3274 -2.2082 35 1 5.6710 2.6835 -1.3494 36 1 6.7654 1.0079 -3.6747 37 1 6.7453 2.7942 -3.4980 38 1 9.2885 3.6240 -1.8968 39 1 7.5304 3.7582 -1.6337 40 1 9.0479 1.9189 3.4847 41 1 7.9648 1.2086 1.0698 42 1 9.5639 1.0367 0.2937 43 1 4.4449 -2.8601 -1.0368 44 1 5.3050 -2.3736 0.4436 45 1 3.7637 -3.2562 0.5592 46 1 1.6522 -2.1330 -0.0108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076523303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:56 Heat of formation + Delta-G solvation = 22.305488 kcal Electronic energy + Delta-G solvation = -27225.851815 eV Core-core repulsion = 23694.929474 eV Total energy + Delta-G solvation = -3530.922341 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.46269 -39.18667 -37.42567 -34.73943 -33.35629 -32.53236 -31.64889 -30.78085 -28.91914 -27.45816 -27.07049 -26.07179 -24.66699 -23.03137 -22.02198 -21.36237 -20.37459 -19.52054 -18.67770 -17.17151 -16.59751 -16.11961 -15.80465 -15.13942 -14.76554 -14.59866 -14.09270 -13.90428 -13.78980 -13.71396 -13.29644 -13.19098 -13.02462 -12.85064 -12.64723 -12.33072 -12.10281 -11.88386 -11.85735 -11.56917 -11.46867 -11.38415 -11.07262 -10.99092 -10.90776 -10.70832 -10.48953 -10.26043 -10.08146 -9.76477 -9.64324 -9.24175 -8.76044 -8.56212 -8.50568 -8.03259 -6.75485 -5.59088 -3.00376 1.09829 1.40764 3.13825 3.42649 3.44286 3.47414 3.51033 3.81655 4.51973 4.65683 4.73933 4.80614 4.85978 4.93769 5.11104 5.18090 5.24805 5.31293 5.43399 5.52766 5.54229 5.56648 5.65518 5.65969 5.73450 5.76380 5.79945 5.83719 5.91200 5.94913 6.02323 6.06525 6.28257 6.28836 6.36163 6.39794 6.53414 6.56214 6.63642 6.65105 6.70258 6.90409 6.97407 7.53174 7.70681 7.99530 8.07100 8.45740 8.68725 9.28238 9.90077 10.52839 11.45513 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013718 B = 0.004538 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.577667 B = 6168.951348 C = 6810.958835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.072 4.072 3 C -0.133 4.133 4 C -0.078 4.078 5 C -0.121 4.121 6 C 0.574 3.426 7 O -0.521 6.521 8 N -0.592 5.592 9 C 0.103 3.897 10 C -0.124 4.124 11 C -0.110 4.110 12 H 0.096 0.904 13 C 0.143 3.857 14 N -0.599 5.599 15 C -0.231 4.231 16 H 0.077 0.923 17 C -0.006 4.006 18 N -0.912 5.912 19 Si 0.910 3.090 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.154 3.846 24 C 0.114 3.886 25 H 0.078 0.922 26 C -0.033 4.033 27 C -0.137 4.137 28 C -0.131 4.131 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.020 0.980 39 H 0.023 0.977 40 H 0.252 0.748 41 H 0.109 0.891 42 H 0.021 0.979 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.066 0.934 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.466 -5.267 -11.595 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.072 4.072 3 C -0.151 4.151 4 C -0.096 4.096 5 C -0.124 4.124 6 C 0.362 3.638 7 O -0.398 6.398 8 N -0.325 5.325 9 C -0.021 4.021 10 C -0.162 4.162 11 C -0.129 4.129 12 H 0.114 0.886 13 C 0.017 3.983 14 N -0.325 5.325 15 C -0.359 4.359 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.559 5.559 19 Si 0.741 3.259 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.217 1.217 23 C 0.028 3.972 24 C 0.010 3.990 25 H 0.096 0.904 26 C -0.034 4.034 27 C -0.193 4.193 28 C -0.149 4.149 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.038 0.962 39 H 0.041 0.959 40 H 0.063 0.937 41 H 0.127 0.873 42 H 0.038 0.962 43 H 0.086 0.914 44 H 0.115 0.885 45 H 0.085 0.915 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.133 -5.667 -10.879 18.714 hybrid contribution 0.179 0.849 0.726 1.131 sum -13.954 -4.818 -10.153 17.917 Atomic orbital electron populations 1.20810 0.91191 1.02693 1.02397 1.20018 0.96003 0.93128 0.98029 1.20928 0.93787 0.97599 1.02778 1.21377 0.94234 0.97451 0.96548 1.19828 0.93232 0.93905 1.05478 1.17799 0.86339 0.79550 0.80098 1.90766 1.69321 1.42524 1.37228 1.48185 1.07512 1.40256 1.36521 1.22359 0.96374 0.93525 0.89800 1.22804 0.94688 1.02182 0.96570 1.23070 0.97058 0.96975 0.95839 0.88573 1.21111 0.97713 0.93148 0.86334 1.44140 1.85250 1.02548 1.00611 1.19022 1.42850 0.87533 0.86521 0.90504 1.24823 1.02031 0.96244 0.97204 1.69920 1.55765 1.13409 1.16791 0.86075 0.77421 0.80436 0.81996 1.20562 1.21804 1.21723 1.21709 0.97872 0.82566 0.95025 1.22682 0.79903 0.98255 0.98123 0.90428 1.19866 0.93340 0.94470 0.95719 1.21112 1.02698 0.93199 1.02273 1.20808 0.93076 0.97624 1.03390 0.91061 0.91579 0.91471 0.85737 0.85192 0.91212 0.91047 0.91162 0.90029 0.96248 0.95895 0.93696 0.87340 0.96158 0.91438 0.88466 0.91497 0.85812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 2 C -0.07 -0.81 5.89 -104.53 -0.62 -1.43 16 3 C -0.13 -1.64 9.68 -39.63 -0.38 -2.02 16 4 C -0.08 -1.16 8.15 -39.18 -0.32 -1.48 16 5 C -0.12 -2.04 5.16 -104.97 -0.54 -2.58 16 6 C 0.57 11.54 6.55 -12.33 -0.08 11.46 16 7 O -0.52 -12.40 14.29 5.32 0.08 -12.32 16 8 N -0.59 -11.11 3.01 -163.36 -0.49 -11.60 16 9 C 0.10 1.54 4.99 -2.56 -0.01 1.52 16 10 C -0.12 -1.62 6.31 -24.60 -0.16 -1.78 16 11 C -0.11 -1.83 4.27 -87.86 -0.38 -2.20 16 12 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 13 C 0.14 2.90 6.39 -3.71 -0.02 2.88 16 14 N -0.60 -15.50 3.37 -172.23 -0.58 -16.08 16 15 C -0.23 -6.55 10.25 -15.06 -0.15 -6.70 16 16 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 17 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 18 N -0.91 -28.05 10.17 55.49 0.56 -27.48 16 19 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 23 C 0.15 3.95 5.15 -3.53 -0.02 3.93 16 24 C 0.11 2.28 3.68 -66.21 -0.24 2.04 16 25 H 0.08 1.50 8.14 -51.92 -0.42 1.07 16 26 C -0.03 -0.49 5.91 -104.22 -0.62 -1.10 16 27 C -0.14 -1.87 9.67 36.01 0.35 -1.52 16 28 C -0.13 -1.59 9.35 -39.64 -0.37 -1.96 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.07 0.46 8.08 -51.93 -0.42 0.05 16 32 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.13 1.99 6.80 -52.49 -0.36 1.63 16 34 H 0.07 0.90 7.06 -51.93 -0.37 0.54 16 35 H 0.07 1.15 6.92 -51.93 -0.36 0.79 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.92 7.96 -51.93 -0.41 0.50 16 38 H 0.02 0.40 8.14 -51.92 -0.42 -0.03 16 39 H 0.02 0.45 6.78 -51.93 -0.35 0.10 16 40 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.11 3.25 5.16 -51.93 -0.27 2.98 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.10 1.64 5.37 -51.93 -0.28 1.36 16 45 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 46 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -34.03 358.17 -10.36 -44.39 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -7.01 Total: 1.78 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -3.30 Total: -1.77 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.51 Total: -55.16 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.08 Total: -12.32 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.03 -10.36 -44.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076523303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.693 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds