Wall clock time and date at job start Tue Mar 31 2020 10:22:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38387 * 119.85086 * 2 1
4 4 C 1.37945 * 120.14027 * 179.71963 * 3 2 1
5 5 C 1.39593 * 119.85352 * 0.52734 * 4 3 2
6 6 C 1.47844 * 120.14054 * 179.72451 * 5 4 3
7 7 O 1.21556 * 119.99673 * 130.57393 * 6 5 4
8 8 N 1.34772 * 120.00308 * 310.57285 * 6 5 4
9 9 C 1.47409 * 125.58679 * 4.91109 * 8 6 5
10 10 C 1.54866 * 104.81520 * 204.39729 * 9 8 6
11 11 C 1.55170 * 101.73459 * 322.77200 * 10 9 8
12 12 H 1.08994 * 113.25578 * 158.11807 * 11 10 9
13 13 C 1.53757 * 108.30815 * 285.38378 * 11 10 9
14 14 N 1.46382 * 108.45187 * 123.94463 * 13 11 10
15 15 C 1.36934 * 125.49478 * 181.46155 * 14 13 11
16 16 H 1.07994 * 119.99923 * 0.31550 * 15 14 13
17 17 C 1.38810 * 119.99832 * 180.30978 * 15 14 13
18 18 N 1.31613 * 120.00493 * 0.02562 * 17 15 14
19 19 Si 1.86798 * 119.99595 * 179.97438 * 17 15 14
20 20 H 1.48494 * 109.47480 * 0.02562 * 19 17 15
21 21 H 1.48505 * 109.46867 * 120.00878 * 19 17 15
22 22 H 1.48503 * 109.47529 * 240.00230 * 19 17 15
23 23 C 1.46721 * 109.19165 * 1.71087 * 14 13 11
24 24 C 1.46708 * 125.58795 * 184.59631 * 8 6 5
25 25 H 1.09007 * 111.52805 * 56.11143 * 24 8 6
26 26 C 1.39549 * 119.71274 * 359.74315 * 5 4 3
27 27 C 1.50706 * 120.07421 * 180.02562 * 26 5 4
28 28 C 1.37980 * 119.85569 * 0.02562 * 26 5 4
29 29 H 1.09000 * 109.47191 * 269.72684 * 1 2 3
30 30 H 1.09003 * 109.46405 * 149.72735 * 1 2 3
31 31 H 1.08995 * 109.47045 * 29.73036 * 1 2 3
32 32 H 1.07998 * 119.92709 * 359.97438 * 3 2 1
33 33 H 1.08002 * 120.07022 * 180.26933 * 4 3 2
34 34 H 1.09000 * 110.36760 * 323.23028 * 9 8 6
35 35 H 1.08998 * 110.37002 * 85.56418 * 9 8 6
36 36 H 1.09001 * 110.97154 * 80.88311 * 10 9 8
37 37 H 1.08995 * 110.97054 * 204.61975 * 10 9 8
38 38 H 1.09008 * 109.74115 * 244.04519 * 13 11 10
39 39 H 1.08997 * 109.74919 * 4.70175 * 13 11 10
40 40 H 0.96999 * 120.00438 * 179.97438 * 18 17 15
41 41 H 1.08998 * 109.98529 * 222.44111 * 23 14 13
42 42 H 1.08995 * 109.98155 * 101.13723 * 23 14 13
43 43 H 1.08994 * 109.46949 * 266.11819 * 27 26 5
44 44 H 1.08995 * 109.46769 * 26.12201 * 27 26 5
45 45 H 1.09004 * 109.46966 * 146.11635 * 27 26 5
46 46 H 1.07998 * 119.93148 * 179.97438 * 28 26 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1958 1.2003 0.0000
4 6 3.5752 1.2072 0.0058
5 6 4.2763 0.0001 0.0006
6 6 5.7547 0.0002 0.0007
7 8 6.3624 -0.6880 0.7973
8 7 6.4286 0.7632 -0.8825
9 6 5.8232 1.7169 -1.8296
10 6 6.8538 1.8421 -2.9787
11 6 8.1977 1.7802 -2.2054
12 1 9.0389 1.4761 -2.8282
13 6 8.4071 3.1262 -1.4923
14 7 8.5908 2.8696 -0.0629
15 6 8.7758 3.8263 0.8992
16 1 8.7897 4.8710 0.6263
17 6 8.9455 3.4530 2.2254
18 7 8.9290 2.1797 2.5581
19 14 9.1986 4.7580 3.5378
20 1 9.1771 6.1031 2.9091
21 1 8.1109 4.6650 4.5445
22 1 10.5087 4.5432 4.2034
23 6 8.5513 1.4226 0.1763
24 6 7.8854 0.7856 -1.0544
25 1 8.2784 -0.2087 -1.2672
26 6 3.5755 -1.2067 -0.0051
27 6 4.3241 -2.5147 -0.0102
28 6 2.1957 -1.1998 -0.0060
29 1 -0.3633 -0.0049 1.0276
30 1 -0.3632 -0.8876 -0.5181
31 1 -0.3633 0.8924 -0.5096
32 1 1.6522 2.1335 -0.0004
33 1 4.1117 2.1446 0.0102
34 1 4.8782 1.3274 -2.2082
35 1 5.6710 2.6835 -1.3494
36 1 6.7654 1.0079 -3.6747
37 1 6.7453 2.7942 -3.4980
38 1 9.2885 3.6240 -1.8968
39 1 7.5304 3.7582 -1.6337
40 1 9.0479 1.9189 3.4847
41 1 7.9648 1.2086 1.0698
42 1 9.5639 1.0367 0.2937
43 1 4.4449 -2.8601 -1.0368
44 1 5.3050 -2.3736 0.4436
45 1 3.7637 -3.2562 0.5592
46 1 1.6522 -2.1330 -0.0108
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001076523303.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:22:56
Heat of formation + Delta-G solvation = 22.305488 kcal
Electronic energy + Delta-G solvation = -27225.851815 eV
Core-core repulsion = 23694.929474 eV
Total energy + Delta-G solvation = -3530.922341 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-40.46269 -39.18667 -37.42567 -34.73943 -33.35629 -32.53236 -31.64889 -30.78085
-28.91914 -27.45816 -27.07049 -26.07179 -24.66699 -23.03137 -22.02198 -21.36237
-20.37459 -19.52054 -18.67770 -17.17151 -16.59751 -16.11961 -15.80465 -15.13942
-14.76554 -14.59866 -14.09270 -13.90428 -13.78980 -13.71396 -13.29644 -13.19098
-13.02462 -12.85064 -12.64723 -12.33072 -12.10281 -11.88386 -11.85735 -11.56917
-11.46867 -11.38415 -11.07262 -10.99092 -10.90776 -10.70832 -10.48953 -10.26043
-10.08146 -9.76477 -9.64324 -9.24175 -8.76044 -8.56212 -8.50568 -8.03259
-6.75485 -5.59088 -3.00376 1.09829 1.40764 3.13825 3.42649 3.44286
3.47414 3.51033 3.81655 4.51973 4.65683 4.73933 4.80614 4.85978
4.93769 5.11104 5.18090 5.24805 5.31293 5.43399 5.52766 5.54229
5.56648 5.65518 5.65969 5.73450 5.76380 5.79945 5.83719 5.91200
5.94913 6.02323 6.06525 6.28257 6.28836 6.36163 6.39794 6.53414
6.56214 6.63642 6.65105 6.70258 6.90409 6.97407 7.53174 7.70681
7.99530 8.07100 8.45740 8.68725 9.28238 9.90077 10.52839 11.45513
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.013718 B = 0.004538 C = 0.004110
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2040.577667 B = 6168.951348 C = 6810.958835
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.072 4.072
3 C -0.133 4.133
4 C -0.078 4.078
5 C -0.121 4.121
6 C 0.574 3.426
7 O -0.521 6.521
8 N -0.592 5.592
9 C 0.103 3.897
10 C -0.124 4.124
11 C -0.110 4.110
12 H 0.096 0.904
13 C 0.143 3.857
14 N -0.599 5.599
15 C -0.231 4.231
16 H 0.077 0.923
17 C -0.006 4.006
18 N -0.912 5.912
19 Si 0.910 3.090
20 H -0.280 1.280
21 H -0.291 1.291
22 H -0.290 1.290
23 C 0.154 3.846
24 C 0.114 3.886
25 H 0.078 0.922
26 C -0.033 4.033
27 C -0.137 4.137
28 C -0.131 4.131
29 H 0.071 0.929
30 H 0.065 0.935
31 H 0.066 0.934
32 H 0.125 0.875
33 H 0.130 0.870
34 H 0.070 0.930
35 H 0.071 0.929
36 H 0.070 0.930
37 H 0.081 0.919
38 H 0.020 0.980
39 H 0.023 0.977
40 H 0.252 0.748
41 H 0.109 0.891
42 H 0.021 0.979
43 H 0.067 0.933
44 H 0.097 0.903
45 H 0.066 0.934
46 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.466 -5.267 -11.595 19.273
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.072 4.072
3 C -0.151 4.151
4 C -0.096 4.096
5 C -0.124 4.124
6 C 0.362 3.638
7 O -0.398 6.398
8 N -0.325 5.325
9 C -0.021 4.021
10 C -0.162 4.162
11 C -0.129 4.129
12 H 0.114 0.886
13 C 0.017 3.983
14 N -0.325 5.325
15 C -0.359 4.359
16 H 0.095 0.905
17 C -0.203 4.203
18 N -0.559 5.559
19 Si 0.741 3.259
20 H -0.206 1.206
21 H -0.218 1.218
22 H -0.217 1.217
23 C 0.028 3.972
24 C 0.010 3.990
25 H 0.096 0.904
26 C -0.034 4.034
27 C -0.193 4.193
28 C -0.149 4.149
29 H 0.089 0.911
30 H 0.084 0.916
31 H 0.085 0.915
32 H 0.143 0.857
33 H 0.148 0.852
34 H 0.088 0.912
35 H 0.090 0.910
36 H 0.088 0.912
37 H 0.100 0.900
38 H 0.038 0.962
39 H 0.041 0.959
40 H 0.063 0.937
41 H 0.127 0.873
42 H 0.038 0.962
43 H 0.086 0.914
44 H 0.115 0.885
45 H 0.085 0.915
46 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges -14.133 -5.667 -10.879 18.714
hybrid contribution 0.179 0.849 0.726 1.131
sum -13.954 -4.818 -10.153 17.917
Atomic orbital electron populations
1.20810 0.91191 1.02693 1.02397 1.20018 0.96003 0.93128 0.98029
1.20928 0.93787 0.97599 1.02778 1.21377 0.94234 0.97451 0.96548
1.19828 0.93232 0.93905 1.05478 1.17799 0.86339 0.79550 0.80098
1.90766 1.69321 1.42524 1.37228 1.48185 1.07512 1.40256 1.36521
1.22359 0.96374 0.93525 0.89800 1.22804 0.94688 1.02182 0.96570
1.23070 0.97058 0.96975 0.95839 0.88573 1.21111 0.97713 0.93148
0.86334 1.44140 1.85250 1.02548 1.00611 1.19022 1.42850 0.87533
0.86521 0.90504 1.24823 1.02031 0.96244 0.97204 1.69920 1.55765
1.13409 1.16791 0.86075 0.77421 0.80436 0.81996 1.20562 1.21804
1.21723 1.21709 0.97872 0.82566 0.95025 1.22682 0.79903 0.98255
0.98123 0.90428 1.19866 0.93340 0.94470 0.95719 1.21112 1.02698
0.93199 1.02273 1.20808 0.93076 0.97624 1.03390 0.91061 0.91579
0.91471 0.85737 0.85192 0.91212 0.91047 0.91162 0.90029 0.96248
0.95895 0.93696 0.87340 0.96158 0.91438 0.88466 0.91497 0.85812
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16
2 C -0.07 -0.81 5.89 -104.53 -0.62 -1.43 16
3 C -0.13 -1.64 9.68 -39.63 -0.38 -2.02 16
4 C -0.08 -1.16 8.15 -39.18 -0.32 -1.48 16
5 C -0.12 -2.04 5.16 -104.97 -0.54 -2.58 16
6 C 0.57 11.54 6.55 -12.33 -0.08 11.46 16
7 O -0.52 -12.40 14.29 5.32 0.08 -12.32 16
8 N -0.59 -11.11 3.01 -163.36 -0.49 -11.60 16
9 C 0.10 1.54 4.99 -2.56 -0.01 1.52 16
10 C -0.12 -1.62 6.31 -24.60 -0.16 -1.78 16
11 C -0.11 -1.83 4.27 -87.86 -0.38 -2.20 16
12 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16
13 C 0.14 2.90 6.39 -3.71 -0.02 2.88 16
14 N -0.60 -15.50 3.37 -172.23 -0.58 -16.08 16
15 C -0.23 -6.55 10.25 -15.06 -0.15 -6.70 16
16 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16
17 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16
18 N -0.91 -28.05 10.17 55.49 0.56 -27.48 16
19 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16
20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16
22 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16
23 C 0.15 3.95 5.15 -3.53 -0.02 3.93 16
24 C 0.11 2.28 3.68 -66.21 -0.24 2.04 16
25 H 0.08 1.50 8.14 -51.92 -0.42 1.07 16
26 C -0.03 -0.49 5.91 -104.22 -0.62 -1.10 16
27 C -0.14 -1.87 9.67 36.01 0.35 -1.52 16
28 C -0.13 -1.59 9.35 -39.64 -0.37 -1.96 16
29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
30 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16
31 H 0.07 0.46 8.08 -51.93 -0.42 0.05 16
32 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16
33 H 0.13 1.99 6.80 -52.49 -0.36 1.63 16
34 H 0.07 0.90 7.06 -51.93 -0.37 0.54 16
35 H 0.07 1.15 6.92 -51.93 -0.36 0.79 16
36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
37 H 0.08 0.92 7.96 -51.93 -0.41 0.50 16
38 H 0.02 0.40 8.14 -51.92 -0.42 -0.03 16
39 H 0.02 0.45 6.78 -51.93 -0.35 0.10 16
40 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16
41 H 0.11 3.25 5.16 -51.93 -0.27 2.98 16
42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16
43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
44 H 0.10 1.64 5.37 -51.93 -0.28 1.36 16
45 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16
46 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16
LS Contribution 358.17 15.07 5.40 5.40
Total: -1.00 -34.03 358.17 -10.36 -44.39
By element:
Atomic # 1 Polarization: 8.79 SS G_CDS: -7.01 Total: 1.78 kcal
Atomic # 6 Polarization: 1.53 SS G_CDS: -3.30 Total: -1.77 kcal
Atomic # 7 Polarization: -54.66 SS G_CDS: -0.51 Total: -55.16 kcal
Atomic # 8 Polarization: -12.40 SS G_CDS: 0.08 Total: -12.32 kcal
Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal
Total LS contribution 5.40 Total: 5.40 kcal
Total: -34.03 -10.36 -44.39 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001076523303.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.693 kcal
(2) G-P(sol) polarization free energy of solvation -34.025 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.668 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.387 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.305 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds