Wall clock time and date at job start Tue Mar 31 2020 10:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38387 * 119.85086 * 2 1 4 4 C 1.37945 * 120.14027 * 179.71963 * 3 2 1 5 5 C 1.39593 * 119.85352 * 0.52734 * 4 3 2 6 6 C 1.47844 * 120.14054 * 179.72451 * 5 4 3 7 7 O 1.21556 * 119.99673 * 130.57393 * 6 5 4 8 8 N 1.34772 * 120.00308 * 310.57285 * 6 5 4 9 9 C 1.47409 * 125.58679 * 4.91109 * 8 6 5 10 10 C 1.54866 * 104.81520 * 204.39729 * 9 8 6 11 11 C 1.55170 * 101.73459 * 322.77200 * 10 9 8 12 12 H 1.08994 * 113.25578 * 158.11807 * 11 10 9 13 13 C 1.53757 * 108.30815 * 285.38378 * 11 10 9 14 14 N 1.46382 * 108.45187 * 123.94463 * 13 11 10 15 15 C 1.36934 * 125.49478 * 181.46155 * 14 13 11 16 16 H 1.07994 * 119.99923 * 0.31550 * 15 14 13 17 17 C 1.38810 * 119.99832 * 180.30978 * 15 14 13 18 18 N 1.31613 * 120.00493 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99595 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47480 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46867 * 120.00878 * 19 17 15 22 22 H 1.48503 * 109.47529 * 240.00230 * 19 17 15 23 23 C 1.46721 * 109.19165 * 1.71087 * 14 13 11 24 24 C 1.46708 * 125.58795 * 184.59631 * 8 6 5 25 25 H 1.09007 * 111.52805 * 56.11143 * 24 8 6 26 26 C 1.39549 * 119.71274 * 359.74315 * 5 4 3 27 27 C 1.50706 * 120.07421 * 180.02562 * 26 5 4 28 28 C 1.37980 * 119.85569 * 0.02562 * 26 5 4 29 29 H 1.09000 * 109.47191 * 269.72684 * 1 2 3 30 30 H 1.09003 * 109.46405 * 149.72735 * 1 2 3 31 31 H 1.08995 * 109.47045 * 29.73036 * 1 2 3 32 32 H 1.07998 * 119.92709 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.07022 * 180.26933 * 4 3 2 34 34 H 1.09000 * 110.36760 * 323.23028 * 9 8 6 35 35 H 1.08998 * 110.37002 * 85.56418 * 9 8 6 36 36 H 1.09001 * 110.97154 * 80.88311 * 10 9 8 37 37 H 1.08995 * 110.97054 * 204.61975 * 10 9 8 38 38 H 1.09008 * 109.74115 * 244.04519 * 13 11 10 39 39 H 1.08997 * 109.74919 * 4.70175 * 13 11 10 40 40 H 0.96999 * 120.00438 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.98529 * 222.44111 * 23 14 13 42 42 H 1.08995 * 109.98155 * 101.13723 * 23 14 13 43 43 H 1.08994 * 109.46949 * 266.11819 * 27 26 5 44 44 H 1.08995 * 109.46769 * 26.12201 * 27 26 5 45 45 H 1.09004 * 109.46966 * 146.11635 * 27 26 5 46 46 H 1.07998 * 119.93148 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5752 1.2072 0.0058 5 6 4.2763 0.0001 0.0006 6 6 5.7547 0.0002 0.0007 7 8 6.3624 -0.6880 0.7973 8 7 6.4286 0.7632 -0.8825 9 6 5.8232 1.7169 -1.8296 10 6 6.8538 1.8421 -2.9787 11 6 8.1977 1.7802 -2.2054 12 1 9.0389 1.4761 -2.8282 13 6 8.4071 3.1262 -1.4923 14 7 8.5908 2.8696 -0.0629 15 6 8.7758 3.8263 0.8992 16 1 8.7897 4.8710 0.6263 17 6 8.9455 3.4530 2.2254 18 7 8.9290 2.1797 2.5581 19 14 9.1986 4.7580 3.5378 20 1 9.1771 6.1031 2.9091 21 1 8.1109 4.6650 4.5445 22 1 10.5087 4.5432 4.2034 23 6 8.5513 1.4226 0.1763 24 6 7.8854 0.7856 -1.0544 25 1 8.2784 -0.2087 -1.2672 26 6 3.5755 -1.2067 -0.0051 27 6 4.3241 -2.5147 -0.0102 28 6 2.1957 -1.1998 -0.0060 29 1 -0.3633 -0.0049 1.0276 30 1 -0.3632 -0.8876 -0.5181 31 1 -0.3633 0.8924 -0.5096 32 1 1.6522 2.1335 -0.0004 33 1 4.1117 2.1446 0.0102 34 1 4.8782 1.3274 -2.2082 35 1 5.6710 2.6835 -1.3494 36 1 6.7654 1.0079 -3.6747 37 1 6.7453 2.7942 -3.4980 38 1 9.2885 3.6240 -1.8968 39 1 7.5304 3.7582 -1.6337 40 1 9.0479 1.9189 3.4847 41 1 7.9648 1.2086 1.0698 42 1 9.5639 1.0367 0.2937 43 1 4.4449 -2.8601 -1.0368 44 1 5.3050 -2.3736 0.4436 45 1 3.7637 -3.2562 0.5592 46 1 1.6522 -2.1330 -0.0108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076523303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:55 Heat of formation + Delta-G solvation = 1.550332 kcal Electronic energy + Delta-G solvation = -27226.751826 eV Core-core repulsion = 23694.929474 eV Total energy + Delta-G solvation = -3531.822352 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.85969 -40.42461 -38.90338 -36.54276 -34.38867 -34.10941 -33.00063 -32.37136 -30.63109 -28.56897 -28.17141 -27.52617 -26.60941 -24.30749 -23.13753 -22.87939 -21.82830 -20.89536 -20.12129 -18.96724 -18.24469 -17.53948 -17.06580 -16.73159 -16.26145 -15.89893 -15.62462 -15.34841 -15.08481 -14.88551 -14.58264 -14.47151 -14.20125 -14.05315 -13.94193 -13.79062 -13.45951 -13.25160 -13.03540 -12.97392 -12.89664 -12.83223 -12.56764 -12.47679 -12.38079 -12.06183 -11.95094 -11.87112 -11.83441 -11.60755 -11.41857 -10.85092 -10.67690 -9.78513 -9.64225 -9.49790 -8.88169 -7.80353 -5.24089 0.00697 0.38421 1.39959 1.42071 1.52586 1.73718 2.04676 2.45701 2.71676 3.30912 3.35011 3.59429 3.71528 3.76776 3.81546 3.90380 3.96978 4.01082 4.22562 4.34556 4.42142 4.43895 4.49605 4.57431 4.62387 4.69524 4.72369 4.75265 4.79451 4.86418 4.90299 4.93289 5.02150 5.11796 5.12628 5.19424 5.27118 5.31345 5.35235 5.35674 5.45433 5.54329 5.60025 5.60963 5.87731 5.99236 6.28776 6.59570 7.06696 7.18941 7.78627 8.40208 9.22530 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013718 B = 0.004538 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.577667 B = 6168.951348 C = 6810.958835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.061 4.061 3 C -0.131 4.131 4 C -0.088 4.088 5 C -0.151 4.151 6 C 0.564 3.436 7 O -0.577 6.577 8 N -0.594 5.594 9 C 0.099 3.901 10 C -0.106 4.106 11 C -0.096 4.096 12 H 0.124 0.876 13 C 0.136 3.864 14 N -0.619 5.619 15 C -0.237 4.237 16 H 0.088 0.912 17 C -0.071 4.071 18 N -0.949 5.949 19 Si 0.978 3.022 20 H -0.258 1.258 21 H -0.297 1.297 22 H -0.293 1.293 23 C 0.164 3.836 24 C 0.116 3.884 25 H 0.079 0.921 26 C -0.046 4.046 27 C -0.133 4.133 28 C -0.128 4.128 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.151 0.849 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.027 0.973 39 H 0.037 0.963 40 H 0.241 0.759 41 H 0.060 0.940 42 H -0.023 1.023 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.088 0.912 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.704 -4.284 -14.388 23.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.062 4.062 3 C -0.149 4.149 4 C -0.107 4.107 5 C -0.154 4.154 6 C 0.354 3.646 7 O -0.458 6.458 8 N -0.326 5.326 9 C -0.023 4.023 10 C -0.143 4.143 11 C -0.115 4.115 12 H 0.142 0.858 13 C 0.011 3.989 14 N -0.345 5.345 15 C -0.366 4.366 16 H 0.106 0.894 17 C -0.264 4.264 18 N -0.598 5.598 19 Si 0.807 3.193 20 H -0.182 1.182 21 H -0.224 1.224 22 H -0.220 1.220 23 C 0.038 3.962 24 C 0.011 3.989 25 H 0.097 0.903 26 C -0.046 4.046 27 C -0.189 4.189 28 C -0.146 4.146 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.169 0.831 33 H 0.134 0.866 34 H 0.113 0.887 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.131 0.869 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.078 0.922 42 H -0.005 1.005 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -17.390 -4.633 -13.749 22.648 hybrid contribution 1.133 0.548 1.592 2.029 sum -16.257 -4.085 -12.157 20.707 Atomic orbital electron populations 1.20900 0.88150 1.04407 1.03448 1.20483 0.98078 0.92257 0.95334 1.21230 0.92556 0.99393 1.01698 1.21334 0.95526 0.96161 0.97665 1.19698 0.91011 0.95700 1.08994 1.18538 0.88033 0.78722 0.79269 1.90726 1.70846 1.44831 1.39353 1.48309 1.06955 1.40463 1.36845 1.22578 0.98149 0.91954 0.89596 1.22847 0.90660 1.05117 0.95702 1.23101 1.00338 0.93198 0.94888 0.85780 1.21396 0.98326 0.95678 0.83481 1.44418 1.85009 1.02126 1.02961 1.19486 1.41226 0.88579 0.87345 0.89449 1.25733 1.02779 0.98171 0.99669 1.70255 1.57640 1.15708 1.16212 0.85005 0.76582 0.78850 0.78902 1.18160 1.22416 1.22032 1.21306 0.95219 0.83403 0.96281 1.22460 0.80783 0.98782 0.96887 0.90329 1.20071 0.94653 0.93800 0.96117 1.21050 1.00887 0.93768 1.03195 1.21149 0.91867 0.99440 1.02110 0.90120 0.89817 0.89948 0.83122 0.86561 0.88704 0.92522 0.88246 0.86943 0.95461 0.94527 0.94944 0.92181 1.00525 0.89908 0.92404 0.89295 0.82797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.01 71.24 0.71 -0.56 16 2 C -0.06 -1.18 5.89 -19.80 -0.12 -1.30 16 3 C -0.13 -2.91 9.68 22.24 0.22 -2.70 16 4 C -0.09 -2.62 8.15 22.53 0.18 -2.44 16 5 C -0.15 -5.20 5.16 -20.09 -0.10 -5.30 16 6 C 0.56 24.15 6.55 86.79 0.57 24.72 16 7 O -0.58 -30.12 14.29 -3.89 -0.06 -30.18 16 8 N -0.59 -22.99 3.01 -789.02 -2.37 -25.36 16 9 C 0.10 2.83 4.99 86.84 0.43 3.26 16 10 C -0.11 -2.35 6.31 31.98 0.20 -2.15 16 11 C -0.10 -3.02 4.27 -9.01 -0.04 -3.05 16 12 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 13 C 0.14 5.38 6.39 86.66 0.55 5.93 16 14 N -0.62 -33.10 3.37 -698.81 -2.36 -35.46 16 15 C -0.24 -13.82 10.25 84.03 0.86 -12.96 16 16 H 0.09 4.78 7.83 -2.91 -0.02 4.75 16 17 C -0.07 -4.29 5.48 84.86 0.47 -3.83 16 18 N -0.95 -62.52 10.17 21.65 0.22 -62.30 16 19 Si 0.98 48.35 29.55 68.60 2.03 50.37 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 22 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 23 C 0.16 9.05 5.15 86.59 0.45 9.50 16 24 C 0.12 4.78 3.68 45.99 0.17 4.95 16 25 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 26 C -0.05 -1.32 5.91 -19.61 -0.12 -1.43 16 27 C -0.13 -3.67 9.67 71.24 0.69 -2.99 16 28 C -0.13 -2.76 9.35 22.23 0.21 -2.55 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 31 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 32 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.12 3.67 6.80 -2.91 -0.02 3.65 16 34 H 0.09 2.25 7.06 -2.39 -0.02 2.23 16 35 H 0.06 1.79 6.92 -2.39 -0.02 1.77 16 36 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.11 1.93 7.96 -2.39 -0.02 1.91 16 38 H 0.03 1.05 8.14 -2.38 -0.02 1.04 16 39 H 0.04 1.37 6.78 -2.39 -0.02 1.35 16 40 H 0.24 15.64 8.31 -92.71 -0.77 14.87 16 41 H 0.06 3.92 5.16 -2.39 -0.01 3.91 16 42 H -0.02 -1.42 8.14 -2.39 -0.02 -1.44 16 43 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.06 2.10 5.37 -2.39 -0.01 2.09 16 45 H 0.09 1.98 8.11 -2.39 -0.02 1.96 16 46 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -83.24 358.17 3.77 -79.47 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.97 Total: 16.34 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 5.33 Total: 7.11 kcal Atomic # 7 Polarization: -118.61 SS G_CDS: -4.51 Total: -123.12 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.06 Total: -30.18 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.37 kcal Total: -83.24 3.77 -79.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076523303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.025 kcal (2) G-P(sol) polarization free energy of solvation -83.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds