Wall clock time and date at job start Tue Mar 31 2020 10:22:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38387 * 119.85086 * 2 1
4 4 C 1.37945 * 120.14027 * 179.71963 * 3 2 1
5 5 C 1.39593 * 119.85352 * 0.52734 * 4 3 2
6 6 C 1.47844 * 120.14054 * 179.72451 * 5 4 3
7 7 O 1.21556 * 119.99673 * 130.57393 * 6 5 4
8 8 N 1.34772 * 120.00308 * 310.57285 * 6 5 4
9 9 C 1.47409 * 125.58679 * 4.91109 * 8 6 5
10 10 C 1.54866 * 104.81520 * 204.39729 * 9 8 6
11 11 C 1.55170 * 101.73459 * 322.77200 * 10 9 8
12 12 H 1.08994 * 113.25578 * 158.11807 * 11 10 9
13 13 C 1.53757 * 108.30815 * 285.38378 * 11 10 9
14 14 N 1.46382 * 108.45187 * 123.94463 * 13 11 10
15 15 C 1.36934 * 125.49478 * 181.46155 * 14 13 11
16 16 H 1.07994 * 119.99923 * 0.31550 * 15 14 13
17 17 C 1.38810 * 119.99832 * 180.30978 * 15 14 13
18 18 N 1.31613 * 120.00493 * 0.02562 * 17 15 14
19 19 Si 1.86798 * 119.99595 * 179.97438 * 17 15 14
20 20 H 1.48494 * 109.47480 * 0.02562 * 19 17 15
21 21 H 1.48505 * 109.46867 * 120.00878 * 19 17 15
22 22 H 1.48503 * 109.47529 * 240.00230 * 19 17 15
23 23 C 1.46721 * 109.19165 * 1.71087 * 14 13 11
24 24 C 1.46708 * 125.58795 * 184.59631 * 8 6 5
25 25 H 1.09007 * 111.52805 * 56.11143 * 24 8 6
26 26 C 1.39549 * 119.71274 * 359.74315 * 5 4 3
27 27 C 1.50706 * 120.07421 * 180.02562 * 26 5 4
28 28 C 1.37980 * 119.85569 * 0.02562 * 26 5 4
29 29 H 1.09000 * 109.47191 * 269.72684 * 1 2 3
30 30 H 1.09003 * 109.46405 * 149.72735 * 1 2 3
31 31 H 1.08995 * 109.47045 * 29.73036 * 1 2 3
32 32 H 1.07998 * 119.92709 * 359.97438 * 3 2 1
33 33 H 1.08002 * 120.07022 * 180.26933 * 4 3 2
34 34 H 1.09000 * 110.36760 * 323.23028 * 9 8 6
35 35 H 1.08998 * 110.37002 * 85.56418 * 9 8 6
36 36 H 1.09001 * 110.97154 * 80.88311 * 10 9 8
37 37 H 1.08995 * 110.97054 * 204.61975 * 10 9 8
38 38 H 1.09008 * 109.74115 * 244.04519 * 13 11 10
39 39 H 1.08997 * 109.74919 * 4.70175 * 13 11 10
40 40 H 0.96999 * 120.00438 * 179.97438 * 18 17 15
41 41 H 1.08998 * 109.98529 * 222.44111 * 23 14 13
42 42 H 1.08995 * 109.98155 * 101.13723 * 23 14 13
43 43 H 1.08994 * 109.46949 * 266.11819 * 27 26 5
44 44 H 1.08995 * 109.46769 * 26.12201 * 27 26 5
45 45 H 1.09004 * 109.46966 * 146.11635 * 27 26 5
46 46 H 1.07998 * 119.93148 * 179.97438 * 28 26 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1958 1.2003 0.0000
4 6 3.5752 1.2072 0.0058
5 6 4.2763 0.0001 0.0006
6 6 5.7547 0.0002 0.0007
7 8 6.3624 -0.6880 0.7973
8 7 6.4286 0.7632 -0.8825
9 6 5.8232 1.7169 -1.8296
10 6 6.8538 1.8421 -2.9787
11 6 8.1977 1.7802 -2.2054
12 1 9.0389 1.4761 -2.8282
13 6 8.4071 3.1262 -1.4923
14 7 8.5908 2.8696 -0.0629
15 6 8.7758 3.8263 0.8992
16 1 8.7897 4.8710 0.6263
17 6 8.9455 3.4530 2.2254
18 7 8.9290 2.1797 2.5581
19 14 9.1986 4.7580 3.5378
20 1 9.1771 6.1031 2.9091
21 1 8.1109 4.6650 4.5445
22 1 10.5087 4.5432 4.2034
23 6 8.5513 1.4226 0.1763
24 6 7.8854 0.7856 -1.0544
25 1 8.2784 -0.2087 -1.2672
26 6 3.5755 -1.2067 -0.0051
27 6 4.3241 -2.5147 -0.0102
28 6 2.1957 -1.1998 -0.0060
29 1 -0.3633 -0.0049 1.0276
30 1 -0.3632 -0.8876 -0.5181
31 1 -0.3633 0.8924 -0.5096
32 1 1.6522 2.1335 -0.0004
33 1 4.1117 2.1446 0.0102
34 1 4.8782 1.3274 -2.2082
35 1 5.6710 2.6835 -1.3494
36 1 6.7654 1.0079 -3.6747
37 1 6.7453 2.7942 -3.4980
38 1 9.2885 3.6240 -1.8968
39 1 7.5304 3.7582 -1.6337
40 1 9.0479 1.9189 3.4847
41 1 7.9648 1.2086 1.0698
42 1 9.5639 1.0367 0.2937
43 1 4.4449 -2.8601 -1.0368
44 1 5.3050 -2.3736 0.4436
45 1 3.7637 -3.2562 0.5592
46 1 1.6522 -2.1330 -0.0108
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001076523303.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:22:55
Heat of formation + Delta-G solvation = 1.550332 kcal
Electronic energy + Delta-G solvation = -27226.751826 eV
Core-core repulsion = 23694.929474 eV
Total energy + Delta-G solvation = -3531.822352 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.85969 -40.42461 -38.90338 -36.54276 -34.38867 -34.10941 -33.00063 -32.37136
-30.63109 -28.56897 -28.17141 -27.52617 -26.60941 -24.30749 -23.13753 -22.87939
-21.82830 -20.89536 -20.12129 -18.96724 -18.24469 -17.53948 -17.06580 -16.73159
-16.26145 -15.89893 -15.62462 -15.34841 -15.08481 -14.88551 -14.58264 -14.47151
-14.20125 -14.05315 -13.94193 -13.79062 -13.45951 -13.25160 -13.03540 -12.97392
-12.89664 -12.83223 -12.56764 -12.47679 -12.38079 -12.06183 -11.95094 -11.87112
-11.83441 -11.60755 -11.41857 -10.85092 -10.67690 -9.78513 -9.64225 -9.49790
-8.88169 -7.80353 -5.24089 0.00697 0.38421 1.39959 1.42071 1.52586
1.73718 2.04676 2.45701 2.71676 3.30912 3.35011 3.59429 3.71528
3.76776 3.81546 3.90380 3.96978 4.01082 4.22562 4.34556 4.42142
4.43895 4.49605 4.57431 4.62387 4.69524 4.72369 4.75265 4.79451
4.86418 4.90299 4.93289 5.02150 5.11796 5.12628 5.19424 5.27118
5.31345 5.35235 5.35674 5.45433 5.54329 5.60025 5.60963 5.87731
5.99236 6.28776 6.59570 7.06696 7.18941 7.78627 8.40208 9.22530
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.013718 B = 0.004538 C = 0.004110
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2040.577667 B = 6168.951348 C = 6810.958835
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.061 4.061
3 C -0.131 4.131
4 C -0.088 4.088
5 C -0.151 4.151
6 C 0.564 3.436
7 O -0.577 6.577
8 N -0.594 5.594
9 C 0.099 3.901
10 C -0.106 4.106
11 C -0.096 4.096
12 H 0.124 0.876
13 C 0.136 3.864
14 N -0.619 5.619
15 C -0.237 4.237
16 H 0.088 0.912
17 C -0.071 4.071
18 N -0.949 5.949
19 Si 0.978 3.022
20 H -0.258 1.258
21 H -0.297 1.297
22 H -0.293 1.293
23 C 0.164 3.836
24 C 0.116 3.884
25 H 0.079 0.921
26 C -0.046 4.046
27 C -0.133 4.133
28 C -0.128 4.128
29 H 0.080 0.920
30 H 0.083 0.917
31 H 0.082 0.918
32 H 0.151 0.849
33 H 0.116 0.884
34 H 0.095 0.905
35 H 0.057 0.943
36 H 0.099 0.901
37 H 0.112 0.888
38 H 0.027 0.973
39 H 0.037 0.963
40 H 0.241 0.759
41 H 0.060 0.940
42 H -0.023 1.023
43 H 0.082 0.918
44 H 0.057 0.943
45 H 0.088 0.912
46 H 0.154 0.846
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.704 -4.284 -14.388 23.212
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.062 4.062
3 C -0.149 4.149
4 C -0.107 4.107
5 C -0.154 4.154
6 C 0.354 3.646
7 O -0.458 6.458
8 N -0.326 5.326
9 C -0.023 4.023
10 C -0.143 4.143
11 C -0.115 4.115
12 H 0.142 0.858
13 C 0.011 3.989
14 N -0.345 5.345
15 C -0.366 4.366
16 H 0.106 0.894
17 C -0.264 4.264
18 N -0.598 5.598
19 Si 0.807 3.193
20 H -0.182 1.182
21 H -0.224 1.224
22 H -0.220 1.220
23 C 0.038 3.962
24 C 0.011 3.989
25 H 0.097 0.903
26 C -0.046 4.046
27 C -0.189 4.189
28 C -0.146 4.146
29 H 0.099 0.901
30 H 0.102 0.898
31 H 0.101 0.899
32 H 0.169 0.831
33 H 0.134 0.866
34 H 0.113 0.887
35 H 0.075 0.925
36 H 0.118 0.882
37 H 0.131 0.869
38 H 0.045 0.955
39 H 0.055 0.945
40 H 0.051 0.949
41 H 0.078 0.922
42 H -0.005 1.005
43 H 0.101 0.899
44 H 0.076 0.924
45 H 0.107 0.893
46 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges -17.390 -4.633 -13.749 22.648
hybrid contribution 1.133 0.548 1.592 2.029
sum -16.257 -4.085 -12.157 20.707
Atomic orbital electron populations
1.20900 0.88150 1.04407 1.03448 1.20483 0.98078 0.92257 0.95334
1.21230 0.92556 0.99393 1.01698 1.21334 0.95526 0.96161 0.97665
1.19698 0.91011 0.95700 1.08994 1.18538 0.88033 0.78722 0.79269
1.90726 1.70846 1.44831 1.39353 1.48309 1.06955 1.40463 1.36845
1.22578 0.98149 0.91954 0.89596 1.22847 0.90660 1.05117 0.95702
1.23101 1.00338 0.93198 0.94888 0.85780 1.21396 0.98326 0.95678
0.83481 1.44418 1.85009 1.02126 1.02961 1.19486 1.41226 0.88579
0.87345 0.89449 1.25733 1.02779 0.98171 0.99669 1.70255 1.57640
1.15708 1.16212 0.85005 0.76582 0.78850 0.78902 1.18160 1.22416
1.22032 1.21306 0.95219 0.83403 0.96281 1.22460 0.80783 0.98782
0.96887 0.90329 1.20071 0.94653 0.93800 0.96117 1.21050 1.00887
0.93768 1.03195 1.21149 0.91867 0.99440 1.02110 0.90120 0.89817
0.89948 0.83122 0.86561 0.88704 0.92522 0.88246 0.86943 0.95461
0.94527 0.94944 0.92181 1.00525 0.89908 0.92404 0.89295 0.82797
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.27 10.01 71.24 0.71 -0.56 16
2 C -0.06 -1.18 5.89 -19.80 -0.12 -1.30 16
3 C -0.13 -2.91 9.68 22.24 0.22 -2.70 16
4 C -0.09 -2.62 8.15 22.53 0.18 -2.44 16
5 C -0.15 -5.20 5.16 -20.09 -0.10 -5.30 16
6 C 0.56 24.15 6.55 86.79 0.57 24.72 16
7 O -0.58 -30.12 14.29 -3.89 -0.06 -30.18 16
8 N -0.59 -22.99 3.01 -789.02 -2.37 -25.36 16
9 C 0.10 2.83 4.99 86.84 0.43 3.26 16
10 C -0.11 -2.35 6.31 31.98 0.20 -2.15 16
11 C -0.10 -3.02 4.27 -9.01 -0.04 -3.05 16
12 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16
13 C 0.14 5.38 6.39 86.66 0.55 5.93 16
14 N -0.62 -33.10 3.37 -698.81 -2.36 -35.46 16
15 C -0.24 -13.82 10.25 84.03 0.86 -12.96 16
16 H 0.09 4.78 7.83 -2.91 -0.02 4.75 16
17 C -0.07 -4.29 5.48 84.86 0.47 -3.83 16
18 N -0.95 -62.52 10.17 21.65 0.22 -62.30 16
19 Si 0.98 48.35 29.55 68.60 2.03 50.37 16
20 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16
21 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16
22 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16
23 C 0.16 9.05 5.15 86.59 0.45 9.50 16
24 C 0.12 4.78 3.68 45.99 0.17 4.95 16
25 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16
26 C -0.05 -1.32 5.91 -19.61 -0.12 -1.43 16
27 C -0.13 -3.67 9.67 71.24 0.69 -2.99 16
28 C -0.13 -2.76 9.35 22.23 0.21 -2.55 16
29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16
30 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16
31 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16
32 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16
33 H 0.12 3.67 6.80 -2.91 -0.02 3.65 16
34 H 0.09 2.25 7.06 -2.39 -0.02 2.23 16
35 H 0.06 1.79 6.92 -2.39 -0.02 1.77 16
36 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16
37 H 0.11 1.93 7.96 -2.39 -0.02 1.91 16
38 H 0.03 1.05 8.14 -2.38 -0.02 1.04 16
39 H 0.04 1.37 6.78 -2.39 -0.02 1.35 16
40 H 0.24 15.64 8.31 -92.71 -0.77 14.87 16
41 H 0.06 3.92 5.16 -2.39 -0.01 3.91 16
42 H -0.02 -1.42 8.14 -2.39 -0.02 -1.44 16
43 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16
44 H 0.06 2.10 5.37 -2.39 -0.01 2.09 16
45 H 0.09 1.98 8.11 -2.39 -0.02 1.96 16
46 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16
Total: -1.00 -83.24 358.17 3.77 -79.47
By element:
Atomic # 1 Polarization: 15.37 SS G_CDS: 0.97 Total: 16.34 kcal
Atomic # 6 Polarization: 1.78 SS G_CDS: 5.33 Total: 7.11 kcal
Atomic # 7 Polarization: -118.61 SS G_CDS: -4.51 Total: -123.12 kcal
Atomic # 8 Polarization: -30.12 SS G_CDS: -0.06 Total: -30.18 kcal
Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.37 kcal
Total: -83.24 3.77 -79.47 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001076523303.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.025 kcal
(2) G-P(sol) polarization free energy of solvation -83.243 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.218 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.475 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.550 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds