Wall clock time and date at job start Tue Mar 31 2020 10:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38385 * 119.85054 * 2 1 4 4 C 1.37935 * 120.14553 * 179.97438 * 3 2 1 5 5 C 1.39603 * 119.85306 * 0.02562 * 4 3 2 6 6 C 1.47843 * 120.14389 * 179.97438 * 5 4 3 7 7 O 1.21550 * 120.00057 * 184.97099 * 6 5 4 8 8 N 1.34782 * 120.00129 * 4.97665 * 6 5 4 9 9 C 1.47402 * 125.58804 * 174.20650 * 8 6 5 10 10 C 1.54864 * 104.81821 * 204.42234 * 9 8 6 11 11 C 1.55172 * 101.73238 * 322.77474 * 10 9 8 12 12 H 1.08995 * 113.90048 * 158.47521 * 11 10 9 13 13 C 1.53751 * 108.30908 * 285.38216 * 11 10 9 14 14 N 1.46588 * 108.10817 * 124.37759 * 13 11 10 15 15 C 1.36935 * 125.31288 * 181.24188 * 14 13 11 16 16 H 1.08005 * 119.99812 * 0.02562 * 15 14 13 17 17 C 1.38813 * 120.00211 * 179.72428 * 15 14 13 18 18 N 1.31613 * 119.99869 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00087 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46991 * 60.00115 * 19 17 15 21 21 H 1.48498 * 109.47347 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47686 * 300.00116 * 19 17 15 23 23 C 1.46714 * 109.37863 * 1.51158 * 14 13 11 24 24 C 1.46709 * 125.58527 * 354.23507 * 8 6 5 25 25 H 1.08996 * 111.53257 * 56.07994 * 24 8 6 26 26 C 1.39556 * 119.70971 * 0.25907 * 5 4 3 27 27 C 1.37987 * 119.84993 * 359.44030 * 26 5 4 28 28 C 1.50696 * 119.92462 * 180.29896 * 27 26 5 29 29 H 1.08997 * 109.46936 * 89.99672 * 1 2 3 30 30 H 1.09004 * 109.46342 * 209.99955 * 1 2 3 31 31 H 1.08995 * 109.47288 * 329.99708 * 1 2 3 32 32 H 1.07998 * 119.92885 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.07605 * 180.02562 * 4 3 2 34 34 H 1.09005 * 110.37098 * 323.25922 * 9 8 6 35 35 H 1.08997 * 110.36847 * 85.58838 * 9 8 6 36 36 H 1.08997 * 110.97369 * 204.66480 * 10 9 8 37 37 H 1.08995 * 110.97340 * 80.88790 * 10 9 8 38 38 H 1.09002 * 109.74981 * 4.70503 * 13 11 10 39 39 H 1.09000 * 109.73358 * 244.03694 * 13 11 10 40 40 H 0.97000 * 120.00394 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.98822 * 101.17499 * 23 14 13 42 42 H 1.08999 * 109.98639 * 222.48845 * 23 14 13 43 43 H 1.07995 * 120.07153 * 179.74740 * 26 5 4 44 44 H 1.08994 * 109.47278 * 270.28372 * 28 27 26 45 45 H 1.09005 * 109.47297 * 30.28295 * 28 27 26 46 46 H 1.08997 * 109.46862 * 150.27899 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5751 1.2074 0.0005 5 6 4.2763 0.0002 0.0005 6 6 5.7547 0.0003 0.0005 7 8 6.3626 -1.0484 -0.0907 8 7 6.4286 1.1631 0.1018 9 6 7.8903 1.2988 0.2350 10 6 8.0996 2.6694 0.9248 11 6 6.9817 3.5251 0.2722 12 1 6.6996 4.4018 0.8551 13 6 7.4105 3.8653 -1.1646 14 7 6.3565 3.4080 -2.0750 15 6 6.3888 3.5135 -3.4399 16 1 7.2415 3.9635 -3.9267 17 6 5.3284 3.0366 -4.1982 18 7 4.2918 2.4834 -3.6053 19 14 5.3721 3.1813 -6.0600 20 1 6.5493 2.4447 -6.5862 21 1 4.1301 2.6010 -6.6310 22 1 5.4720 4.6125 -6.4432 23 6 5.2588 2.8253 -1.2952 24 6 5.8273 2.5014 0.0980 25 1 5.0764 2.6048 0.8813 26 6 3.5755 -1.2067 -0.0055 27 6 2.1957 -1.1997 0.0003 28 6 1.4373 -2.5019 0.0006 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3632 -0.8901 0.5139 31 1 -0.3633 0.8899 0.5138 32 1 1.6522 2.1335 0.0004 33 1 4.1116 2.1447 0.0010 34 1 8.2908 0.4968 0.8552 35 1 8.3630 1.2922 -0.7471 36 1 9.0852 3.0749 0.6960 37 1 7.9522 2.5907 2.0019 38 1 8.3460 3.3577 -1.3998 39 1 7.5411 4.9429 -1.2643 40 1 3.5509 2.1498 -4.1351 41 1 4.4416 3.5415 -1.2095 42 1 4.9056 1.9120 -1.7740 43 1 4.1120 -2.1440 -0.0096 44 1 1.2545 -2.8162 -1.0269 45 1 2.0235 -3.2637 0.5147 46 1 0.4854 -2.3678 0.5144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076526330.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:00 Heat of formation + Delta-G solvation = 52.193451 kcal Electronic energy + Delta-G solvation = -27614.421739 eV Core-core repulsion = 24084.795438 eV Total energy + Delta-G solvation = -3529.626302 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.68624 -38.93859 -37.62504 -34.61797 -33.69952 -32.02089 -31.83168 -30.97948 -29.06310 -27.69912 -26.43627 -26.22962 -24.71418 -23.04356 -21.71130 -20.98592 -20.81724 -19.75084 -18.75881 -17.00748 -16.64773 -15.82910 -15.66955 -14.92102 -14.77874 -14.71894 -14.27450 -13.90666 -13.82871 -13.65521 -13.09782 -12.93364 -12.72562 -12.70035 -12.58636 -12.35401 -12.10946 -11.94441 -11.83521 -11.59866 -11.27675 -11.15766 -11.08608 -11.00553 -10.75427 -10.72743 -10.46434 -10.23721 -10.00746 -9.81181 -9.70761 -9.35134 -8.68436 -8.45559 -8.23207 -8.04939 -6.86481 -5.70271 -3.09359 1.27984 1.77301 3.28421 3.39521 3.44283 3.45233 3.45778 4.25760 4.46192 4.72099 4.74059 4.97069 5.10657 5.14399 5.17931 5.24027 5.31347 5.38839 5.46949 5.54941 5.59515 5.61060 5.72668 5.78249 5.79624 5.84668 5.93153 5.93871 5.95829 6.01275 6.06789 6.13791 6.31729 6.33487 6.36011 6.39818 6.60235 6.64131 6.75472 6.76927 6.85389 6.90386 7.19103 7.30834 7.57645 7.74908 8.02022 8.29137 8.65482 9.18259 9.79733 10.41077 11.35707 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010497 B = 0.006131 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.666706 B = 4565.981141 C = 6123.417131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.067 4.067 3 C -0.122 4.122 4 C -0.102 4.102 5 C -0.129 4.129 6 C 0.580 3.420 7 O -0.555 6.555 8 N -0.592 5.592 9 C 0.112 3.888 10 C -0.124 4.124 11 C -0.111 4.111 12 H 0.099 0.901 13 C 0.141 3.859 14 N -0.597 5.597 15 C -0.229 4.229 16 H 0.078 0.922 17 C -0.006 4.006 18 N -0.917 5.917 19 Si 0.913 3.087 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.145 3.855 24 C 0.087 3.913 25 H 0.092 0.908 26 C -0.059 4.059 27 C -0.109 4.109 28 C -0.111 4.111 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.124 0.876 33 H 0.172 0.828 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.027 0.973 39 H 0.023 0.977 40 H 0.254 0.746 41 H 0.027 0.973 42 H 0.112 0.888 43 H 0.128 0.872 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.717 -2.067 11.964 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.067 4.067 3 C -0.140 4.140 4 C -0.119 4.119 5 C -0.132 4.132 6 C 0.371 3.629 7 O -0.435 6.435 8 N -0.324 5.324 9 C -0.011 4.011 10 C -0.162 4.162 11 C -0.130 4.130 12 H 0.117 0.883 13 C 0.015 3.985 14 N -0.323 5.323 15 C -0.357 4.357 16 H 0.095 0.905 17 C -0.202 4.202 18 N -0.565 5.565 19 Si 0.744 3.256 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.019 3.981 24 C -0.017 4.017 25 H 0.109 0.891 26 C -0.078 4.078 27 C -0.109 4.109 28 C -0.168 4.168 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.142 0.858 33 H 0.189 0.811 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.045 0.955 39 H 0.041 0.959 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.130 0.870 43 H 0.146 0.854 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.558 -2.751 11.711 12.544 hybrid contribution 0.022 0.238 -1.218 1.242 sum -3.536 -2.512 10.492 11.353 Atomic orbital electron populations 1.20883 0.91601 1.02464 1.02432 1.19907 0.95769 0.92845 0.98199 1.20946 0.94154 0.97263 1.01633 1.23051 0.95072 0.99955 0.93864 1.19743 0.92379 0.94446 1.06633 1.17895 0.87055 0.82114 0.75804 1.90696 1.70150 1.31043 1.51623 1.48059 1.07453 1.05337 1.71554 1.22158 0.81232 0.96966 1.00706 1.22814 0.99186 0.94803 0.99400 1.23093 0.94766 0.97206 0.97919 0.88319 1.21222 0.92885 0.96940 0.87502 1.44114 1.16602 1.69769 1.01801 1.18971 1.02919 1.33858 0.79971 0.90457 1.24775 0.96581 1.00672 0.98165 1.69784 1.08434 1.44847 1.33409 0.86181 0.76892 0.77575 0.85000 1.21202 1.21575 1.21179 1.22190 0.89545 1.00768 0.85579 1.23201 0.95743 0.81755 1.01003 0.89092 1.20997 0.93040 0.97440 0.96368 1.19554 0.93266 0.94883 1.03226 1.20794 0.99686 0.94096 1.02213 0.91002 0.91382 0.91661 0.85847 0.81149 0.91040 0.91083 0.89884 0.91072 0.95508 0.95881 0.93580 0.95534 0.87031 0.85417 0.91364 0.91838 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.60 36.01 0.35 -0.96 16 2 C -0.07 -0.99 5.89 -104.53 -0.62 -1.60 16 3 C -0.12 -1.97 9.68 -39.64 -0.38 -2.36 16 4 C -0.10 -1.86 7.09 -39.18 -0.28 -2.13 16 5 C -0.13 -2.51 5.66 -104.97 -0.59 -3.11 16 6 C 0.58 12.32 7.46 -12.33 -0.09 12.23 16 7 O -0.56 -13.00 16.65 5.32 0.09 -12.92 16 8 N -0.59 -11.44 3.01 -168.33 -0.51 -11.94 16 9 C 0.11 1.89 6.42 -2.57 -0.02 1.88 16 10 C -0.12 -1.66 6.30 -24.60 -0.16 -1.81 16 11 C -0.11 -1.74 4.25 -87.87 -0.37 -2.11 16 12 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 13 C 0.14 2.76 6.41 -3.60 -0.02 2.74 16 14 N -0.60 -14.73 3.38 -171.96 -0.58 -15.31 16 15 C -0.23 -6.29 10.25 -15.06 -0.15 -6.44 16 16 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 17 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 18 N -0.92 -26.23 10.15 55.49 0.56 -25.67 16 19 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.14 3.31 3.38 -3.44 -0.01 3.30 16 24 C 0.09 1.58 2.71 -66.13 -0.18 1.40 16 25 H 0.09 1.45 6.18 -51.93 -0.32 1.13 16 26 C -0.06 -1.05 9.25 -39.18 -0.36 -1.42 16 27 C -0.11 -1.66 5.87 -104.68 -0.61 -2.27 16 28 C -0.11 -1.28 9.59 36.00 0.35 -0.94 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.63 5.93 -51.93 -0.31 0.33 16 31 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.17 3.13 1.73 -59.31 -0.10 3.02 16 34 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 35 H 0.07 1.34 7.49 -51.93 -0.39 0.95 16 36 H 0.08 0.97 7.96 -51.93 -0.41 0.56 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.03 0.53 6.78 -51.93 -0.35 0.18 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.03 0.65 7.87 -51.93 -0.41 0.24 16 42 H 0.11 2.94 4.38 -51.93 -0.23 2.71 16 43 H 0.13 2.21 7.66 -52.49 -0.40 1.81 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 46 H 0.07 0.65 5.93 -51.93 -0.31 0.34 16 LS Contribution 350.44 15.07 5.28 5.28 Total: -1.00 -32.60 350.44 -10.01 -42.61 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.57 Total: 4.63 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -3.26 Total: -3.86 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.52 Total: -52.92 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.60 -10.01 -42.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076526330.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.800 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds