Wall clock time and date at job start Tue Mar 31 2020 10:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38385 * 119.85054 * 2 1 4 4 C 1.37935 * 120.14553 * 179.97438 * 3 2 1 5 5 C 1.39603 * 119.85306 * 0.02562 * 4 3 2 6 6 C 1.47843 * 120.14389 * 179.97438 * 5 4 3 7 7 O 1.21550 * 120.00057 * 184.97099 * 6 5 4 8 8 N 1.34782 * 120.00129 * 4.97665 * 6 5 4 9 9 C 1.47402 * 125.58804 * 174.20650 * 8 6 5 10 10 C 1.54864 * 104.81821 * 204.42234 * 9 8 6 11 11 C 1.55172 * 101.73238 * 322.77474 * 10 9 8 12 12 H 1.08995 * 113.90048 * 158.47521 * 11 10 9 13 13 C 1.53751 * 108.30908 * 285.38216 * 11 10 9 14 14 N 1.46588 * 108.10817 * 124.37759 * 13 11 10 15 15 C 1.36935 * 125.31288 * 181.24188 * 14 13 11 16 16 H 1.08005 * 119.99812 * 0.02562 * 15 14 13 17 17 C 1.38813 * 120.00211 * 179.72428 * 15 14 13 18 18 N 1.31613 * 119.99869 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00087 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46991 * 60.00115 * 19 17 15 21 21 H 1.48498 * 109.47347 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47686 * 300.00116 * 19 17 15 23 23 C 1.46714 * 109.37863 * 1.51158 * 14 13 11 24 24 C 1.46709 * 125.58527 * 354.23507 * 8 6 5 25 25 H 1.08996 * 111.53257 * 56.07994 * 24 8 6 26 26 C 1.39556 * 119.70971 * 0.25907 * 5 4 3 27 27 C 1.37987 * 119.84993 * 359.44030 * 26 5 4 28 28 C 1.50696 * 119.92462 * 180.29896 * 27 26 5 29 29 H 1.08997 * 109.46936 * 89.99672 * 1 2 3 30 30 H 1.09004 * 109.46342 * 209.99955 * 1 2 3 31 31 H 1.08995 * 109.47288 * 329.99708 * 1 2 3 32 32 H 1.07998 * 119.92885 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.07605 * 180.02562 * 4 3 2 34 34 H 1.09005 * 110.37098 * 323.25922 * 9 8 6 35 35 H 1.08997 * 110.36847 * 85.58838 * 9 8 6 36 36 H 1.08997 * 110.97369 * 204.66480 * 10 9 8 37 37 H 1.08995 * 110.97340 * 80.88790 * 10 9 8 38 38 H 1.09002 * 109.74981 * 4.70503 * 13 11 10 39 39 H 1.09000 * 109.73358 * 244.03694 * 13 11 10 40 40 H 0.97000 * 120.00394 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.98822 * 101.17499 * 23 14 13 42 42 H 1.08999 * 109.98639 * 222.48845 * 23 14 13 43 43 H 1.07995 * 120.07153 * 179.74740 * 26 5 4 44 44 H 1.08994 * 109.47278 * 270.28372 * 28 27 26 45 45 H 1.09005 * 109.47297 * 30.28295 * 28 27 26 46 46 H 1.08997 * 109.46862 * 150.27899 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5751 1.2074 0.0005 5 6 4.2763 0.0002 0.0005 6 6 5.7547 0.0003 0.0005 7 8 6.3626 -1.0484 -0.0907 8 7 6.4286 1.1631 0.1018 9 6 7.8903 1.2988 0.2350 10 6 8.0996 2.6694 0.9248 11 6 6.9817 3.5251 0.2722 12 1 6.6996 4.4018 0.8551 13 6 7.4105 3.8653 -1.1646 14 7 6.3565 3.4080 -2.0750 15 6 6.3888 3.5135 -3.4399 16 1 7.2415 3.9635 -3.9267 17 6 5.3284 3.0366 -4.1982 18 7 4.2918 2.4834 -3.6053 19 14 5.3721 3.1813 -6.0600 20 1 6.5493 2.4447 -6.5862 21 1 4.1301 2.6010 -6.6310 22 1 5.4720 4.6125 -6.4432 23 6 5.2588 2.8253 -1.2952 24 6 5.8273 2.5014 0.0980 25 1 5.0764 2.6048 0.8813 26 6 3.5755 -1.2067 -0.0055 27 6 2.1957 -1.1997 0.0003 28 6 1.4373 -2.5019 0.0006 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3632 -0.8901 0.5139 31 1 -0.3633 0.8899 0.5138 32 1 1.6522 2.1335 0.0004 33 1 4.1116 2.1447 0.0010 34 1 8.2908 0.4968 0.8552 35 1 8.3630 1.2922 -0.7471 36 1 9.0852 3.0749 0.6960 37 1 7.9522 2.5907 2.0019 38 1 8.3460 3.3577 -1.3998 39 1 7.5411 4.9429 -1.2643 40 1 3.5509 2.1498 -4.1351 41 1 4.4416 3.5415 -1.2095 42 1 4.9056 1.9120 -1.7740 43 1 4.1120 -2.1440 -0.0096 44 1 1.2545 -2.8162 -1.0269 45 1 2.0235 -3.2637 0.5147 46 1 0.4854 -2.3678 0.5144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076526330.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:59 Heat of formation + Delta-G solvation = 33.231280 kcal Electronic energy + Delta-G solvation = -27615.244001 eV Core-core repulsion = 24084.795438 eV Total energy + Delta-G solvation = -3530.448563 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.15647 -40.24362 -39.20689 -36.38711 -34.99701 -33.76478 -33.04080 -32.44997 -30.75538 -28.93151 -27.86994 -27.44407 -26.55633 -24.39526 -23.02865 -22.66806 -22.15422 -21.14312 -20.29924 -18.84108 -18.09674 -17.27266 -17.23014 -16.60509 -16.23414 -16.10163 -15.68515 -15.59824 -15.03675 -15.00173 -14.57250 -14.40356 -14.22645 -13.98930 -13.77147 -13.57091 -13.48724 -13.38296 -13.07228 -12.97362 -12.81726 -12.76280 -12.58501 -12.37011 -12.19624 -12.17347 -11.99491 -11.87221 -11.72199 -11.44125 -11.28506 -10.88259 -10.72202 -9.85094 -9.62617 -9.40308 -8.83856 -7.79311 -5.19264 -0.07828 0.48015 1.42361 1.45036 1.50712 1.78652 2.01966 2.47271 2.88913 3.30584 3.37348 3.41498 3.65957 3.80427 3.89411 3.94923 3.98314 4.06918 4.17802 4.29925 4.34735 4.42943 4.44041 4.56643 4.62452 4.73485 4.76904 4.80576 4.83071 4.87489 4.91019 4.98322 5.01271 5.10100 5.13380 5.20561 5.25277 5.34332 5.35595 5.39170 5.47860 5.49633 5.53339 5.68992 5.82301 6.07468 6.28430 6.48619 7.06926 7.11724 7.81100 8.40518 9.22888 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010497 B = 0.006131 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.666706 B = 4565.981141 C = 6123.417131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.064 4.064 3 C -0.132 4.132 4 C -0.113 4.113 5 C -0.158 4.158 6 C 0.568 3.432 7 O -0.593 6.593 8 N -0.594 5.594 9 C 0.101 3.899 10 C -0.103 4.103 11 C -0.097 4.097 12 H 0.138 0.862 13 C 0.132 3.868 14 N -0.621 5.621 15 C -0.241 4.241 16 H 0.078 0.922 17 C -0.061 4.061 18 N -0.936 5.936 19 Si 0.971 3.029 20 H -0.286 1.286 21 H -0.295 1.295 22 H -0.274 1.274 23 C 0.154 3.846 24 C 0.093 3.907 25 H 0.119 0.881 26 C -0.078 4.078 27 C -0.110 4.110 28 C -0.110 4.110 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.166 0.834 34 H 0.078 0.922 35 H 0.043 0.957 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.024 0.976 39 H 0.032 0.968 40 H 0.244 0.756 41 H 0.007 0.993 42 H 0.075 0.925 43 H 0.120 0.880 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.623 -1.169 13.621 14.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.064 4.064 3 C -0.150 4.150 4 C -0.131 4.131 5 C -0.161 4.161 6 C 0.360 3.640 7 O -0.476 6.476 8 N -0.325 5.325 9 C -0.021 4.021 10 C -0.140 4.140 11 C -0.116 4.116 12 H 0.155 0.845 13 C 0.007 3.993 14 N -0.347 5.347 15 C -0.370 4.370 16 H 0.096 0.904 17 C -0.254 4.254 18 N -0.585 5.585 19 Si 0.800 3.200 20 H -0.213 1.213 21 H -0.222 1.222 22 H -0.200 1.200 23 C 0.029 3.971 24 C -0.011 4.011 25 H 0.136 0.864 26 C -0.097 4.097 27 C -0.110 4.110 28 C -0.166 4.166 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.159 0.841 33 H 0.183 0.817 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.042 0.958 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.025 0.975 42 H 0.093 0.907 43 H 0.138 0.862 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.433 -1.808 13.392 14.222 hybrid contribution 0.297 -0.044 -1.772 1.797 sum -4.136 -1.852 11.620 12.472 Atomic orbital electron populations 1.20975 0.88410 1.04501 1.03258 1.20390 0.98045 0.91994 0.95983 1.21264 0.93568 0.98856 1.01345 1.23014 0.96101 0.99173 0.94780 1.19816 0.91617 0.95712 1.08980 1.18368 0.88068 0.82228 0.75345 1.90643 1.71031 1.32298 1.53677 1.48203 1.08515 1.05287 1.70469 1.22356 0.79860 0.99923 0.99937 1.22814 0.99456 0.91220 1.00549 1.23185 0.94351 0.97994 0.96082 0.84458 1.21468 0.91549 0.97144 0.89110 1.44423 1.18329 1.70169 1.01770 1.19304 1.02712 1.33121 0.81901 0.90413 1.25523 0.96741 1.01231 1.01922 1.70047 1.08631 1.45760 1.34028 0.85271 0.76269 0.77853 0.80643 1.21270 1.22154 1.19968 1.21892 0.89041 0.98372 0.87843 1.23139 0.97307 0.81827 0.98779 0.86410 1.21149 0.94461 0.96682 0.97383 1.19992 0.92424 0.96973 1.01591 1.20877 1.00493 0.92167 1.03041 0.90520 0.89049 0.90047 0.84095 0.81735 0.90355 0.93893 0.87420 0.87813 0.95789 0.94971 0.94631 0.97485 0.90730 0.86155 0.90827 0.91119 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 9.60 71.24 0.68 -1.51 16 2 C -0.06 -1.80 5.89 -19.81 -0.12 -1.91 16 3 C -0.13 -4.23 9.68 22.23 0.22 -4.02 16 4 C -0.11 -4.22 7.09 22.53 0.16 -4.06 16 5 C -0.16 -6.43 5.66 -20.09 -0.11 -6.55 16 6 C 0.57 25.22 7.46 86.79 0.65 25.87 16 7 O -0.59 -29.36 16.65 -3.87 -0.06 -29.43 16 8 N -0.59 -23.28 3.01 -804.75 -2.43 -25.71 16 9 C 0.10 3.39 6.42 86.84 0.56 3.95 16 10 C -0.10 -2.40 6.30 31.98 0.20 -2.20 16 11 C -0.10 -2.79 4.25 -9.01 -0.04 -2.83 16 12 H 0.14 2.99 8.14 -2.39 -0.02 2.97 16 13 C 0.13 5.05 6.41 86.62 0.56 5.60 16 14 N -0.62 -31.10 3.38 -697.96 -2.36 -33.46 16 15 C -0.24 -13.51 10.25 84.03 0.86 -12.65 16 16 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 17 C -0.06 -3.46 5.48 84.86 0.47 -2.99 16 18 N -0.94 -55.45 10.15 21.65 0.22 -55.23 16 19 Si 0.97 46.63 29.55 68.60 2.03 48.66 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 21 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 22 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 23 C 0.15 7.23 3.38 86.65 0.29 7.52 16 24 C 0.09 3.32 2.71 46.05 0.12 3.45 16 25 H 0.12 3.60 6.18 -2.39 -0.01 3.58 16 26 C -0.08 -2.85 9.25 22.53 0.21 -2.64 16 27 C -0.11 -3.26 5.87 -19.90 -0.12 -3.37 16 28 C -0.11 -2.29 9.59 71.23 0.68 -1.61 16 29 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.09 1.32 5.93 -2.39 -0.01 1.31 16 31 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 32 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 33 H 0.17 6.16 1.73 -9.32 -0.02 6.15 16 34 H 0.08 2.49 8.09 -2.38 -0.02 2.47 16 35 H 0.04 1.66 7.49 -2.39 -0.02 1.64 16 36 H 0.11 2.07 7.96 -2.39 -0.02 2.05 16 37 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.02 0.93 6.78 -2.39 -0.02 0.92 16 39 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 41 H 0.01 0.37 7.87 -2.39 -0.02 0.35 16 42 H 0.07 4.11 4.38 -2.39 -0.01 4.10 16 43 H 0.12 4.44 7.66 -2.91 -0.02 4.41 16 44 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.07 1.38 8.09 -2.38 -0.02 1.36 16 46 H 0.09 1.46 5.93 -2.39 -0.01 1.45 16 Total: -1.00 -75.51 350.44 3.66 -71.86 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.98 Total: 23.25 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 5.27 Total: 0.05 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -4.56 Total: -114.39 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.06 Total: -29.43 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -75.51 3.66 -71.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076526330.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.087 kcal (2) G-P(sol) polarization free energy of solvation -75.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds